Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:48179617-48450120

Filter by:
44 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zdhhc9 X 48171967 to 48208702 36735 - protein coding gene zinc finger, DHHC domain containing 9
Cpgi22690 X 48208049 to 48208823 774 CpG island CpG island 22690
Tssr163276 X 48208526 to 48208537 11 - TSS region transcription start site region 163276
Tssr163277 X 48208541 to 48208556 15 - TSS region transcription start site region 163277
Tssr163278 X 48208566 to 48208691 125 - TSS region transcription start site region 163278
Tssr163279 X 48208697 to 48208708 11 - TSS region transcription start site region 163279
Tssr163280 X 48208870 to 48208881 11 - TSS region transcription start site region 163280
Gm24038 X 48230286 to 48230444 158 + snRNA gene predicted gene, 24038
Tssr163281 X 48249213 to 48249217 4 - TSS region transcription start site region 163281
Gm39511 X 48254336 to 48256792 2456 - lncRNA gene predicted gene, 39511
Tssr163282 X 48256658 to 48256673 15 - TSS region transcription start site region 163282
Tssr160888 X 48256854 to 48256865 11 + TSS region transcription start site region 160888
Tssr160889 X 48256881 to 48256928 47 + TSS region transcription start site region 160889
Utp14a X 48256934 to 48282450 25516 + protein coding gene UTP14A small subunit processome component
Tssr160890 X 48270471 to 48270482 11 + TSS region transcription start site region 160890
Tssr160891 X 48274853 to 48274865 12 + TSS region transcription start site region 160891
Tssr160892 X 48274897 to 48274924 27 + TSS region transcription start site region 160892
Tssr160893 X 48274930 to 48274941 11 + TSS region transcription start site region 160893
Tssr160894 X 48275871 to 48275881 10 + TSS region transcription start site region 160894
9530027J09Rik X 48276792 to 48285426 8634 - lincRNA gene RIKEN cDNA 9530027J09 gene
Tssr163283 X 48284268 to 48284276 8 - TSS region transcription start site region 163283
Cpgi22691 X 48284829 to 48285461 632 CpG island CpG island 22691
Cpgi22692 X 48285569 to 48286072 503 CpG island CpG island 22692
Gm22528 X 48299579 to 48299682 103 + snRNA gene predicted gene, 22528
Gm7212 X 48302876 to 48303223 347 - pseudogene predicted gene 7212
Gm22612 X 48307043 to 48307143 100 + snRNA gene predicted gene, 22612
Cpgi22693 X 48314617 to 48315120 503 CpG island CpG island 22693
Tssr163284 X 48314690 to 48314716 26 - TSS region transcription start site region 163284
Cpgi22694 X 48340798 to 48342523 1725 CpG island CpG island 22694
Tssr160895 X 48341344 to 48341418 74 + TSS region transcription start site region 160895
Bcorl1 X 48341358 to 48408049 66691 + protein coding gene BCL6 co-repressor-like 1
Tssr160896 X 48342057 to 48342073 16 + TSS region transcription start site region 160896
Cpgi22695 X 48343495 to 48344272 777 CpG island CpG island 22695
Tssr160897 X 48343702 to 48343723 21 + TSS region transcription start site region 160897
Tssr160898 X 48343758 to 48343776 18 + TSS region transcription start site region 160898
Cpgi22696 X 48344726 to 48345985 1259 CpG island CpG island 22696
Tssr160899 X 48347511 to 48347515 4 + TSS region transcription start site region 160899
Tssr160900 X 48368142 to 48368157 15 + TSS region transcription start site region 160900
Tssr160901 X 48400525 to 48400541 16 + TSS region transcription start site region 160901
Cpgi22697 X 48409879 to 48410266 387 CpG island CpG island 22697
Elf4 X 48411049 to 48463132 52083 - protein coding gene E74-like factor 4 (ets domain transcription factor)
Tssr163285 X 48419148 to 48419162 14 - TSS region transcription start site region 163285
Tssr163286 X 48429231 to 48429236 5 - TSS region transcription start site region 163286
5033418A18Rik X 48441481 to 48443110 1629 unclassified gene RIKEN cDNA 5033418A18 gene