Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:48161049-48713132

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91 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fnld X 36795651 to 48683972 11888321 heritable phenotypic marker faint-lined
Sash3 X 48146436 to 48161565 15129 + protein coding gene SAM and SH3 domain containing 3
Tssr163273 X 48161560 to 48161564 4 - TSS region transcription start site region 163273
Tssr160887 X 48166590 to 48166596 6 + TSS region transcription start site region 160887
Zdhhc9 X 48171967 to 48208702 36735 - protein coding gene zinc finger, DHHC domain containing 9
Tssr163274 X 48173000 to 48173044 44 - TSS region transcription start site region 163274
Tssr163275 X 48173342 to 48173358 16 - TSS region transcription start site region 163275
Cpgi22690 X 48208049 to 48208823 774 CpG island CpG island 22690
Tssr163276 X 48208526 to 48208537 11 - TSS region transcription start site region 163276
Tssr163277 X 48208541 to 48208556 15 - TSS region transcription start site region 163277
Tssr163278 X 48208566 to 48208691 125 - TSS region transcription start site region 163278
Tssr163279 X 48208697 to 48208708 11 - TSS region transcription start site region 163279
Tssr163280 X 48208870 to 48208881 11 - TSS region transcription start site region 163280
Gm24038 X 48230286 to 48230444 158 + snRNA gene predicted gene, 24038
Tssr163281 X 48249213 to 48249217 4 - TSS region transcription start site region 163281
Gm39511 X 48254336 to 48256792 2456 - lncRNA gene predicted gene, 39511
Tssr163282 X 48256658 to 48256673 15 - TSS region transcription start site region 163282
Tssr160888 X 48256854 to 48256865 11 + TSS region transcription start site region 160888
Tssr160889 X 48256881 to 48256928 47 + TSS region transcription start site region 160889
Utp14a X 48256934 to 48282450 25516 + protein coding gene UTP14A small subunit processome component
Tssr160890 X 48270471 to 48270482 11 + TSS region transcription start site region 160890
Tssr160891 X 48274853 to 48274865 12 + TSS region transcription start site region 160891
Tssr160892 X 48274897 to 48274924 27 + TSS region transcription start site region 160892
Tssr160893 X 48274930 to 48274941 11 + TSS region transcription start site region 160893
Tssr160894 X 48275871 to 48275881 10 + TSS region transcription start site region 160894
9530027J09Rik X 48276792 to 48285426 8634 - lincRNA gene RIKEN cDNA 9530027J09 gene
Tssr163283 X 48284268 to 48284276 8 - TSS region transcription start site region 163283
Cpgi22691 X 48284829 to 48285461 632 CpG island CpG island 22691
Cpgi22692 X 48285569 to 48286072 503 CpG island CpG island 22692
Gm22528 X 48299579 to 48299682 103 + snRNA gene predicted gene, 22528
Gm7212 X 48302876 to 48303223 347 - pseudogene predicted gene 7212
Gm22612 X 48307043 to 48307143 100 + snRNA gene predicted gene, 22612
Cpgi22693 X 48314617 to 48315120 503 CpG island CpG island 22693
Tssr163284 X 48314690 to 48314716 26 - TSS region transcription start site region 163284
Cpgi22694 X 48340798 to 48342523 1725 CpG island CpG island 22694
Tssr160895 X 48341344 to 48341418 74 + TSS region transcription start site region 160895
Bcorl1 X 48341358 to 48408049 66691 + protein coding gene BCL6 co-repressor-like 1
Tssr160896 X 48342057 to 48342073 16 + TSS region transcription start site region 160896
Cpgi22695 X 48343495 to 48344272 777 CpG island CpG island 22695
Tssr160897 X 48343702 to 48343723 21 + TSS region transcription start site region 160897
Tssr160898 X 48343758 to 48343776 18 + TSS region transcription start site region 160898
Cpgi22696 X 48344726 to 48345985 1259 CpG island CpG island 22696
Tssr160899 X 48347511 to 48347515 4 + TSS region transcription start site region 160899
Tssr160900 X 48368142 to 48368157 15 + TSS region transcription start site region 160900
Tssr160901 X 48400525 to 48400541 16 + TSS region transcription start site region 160901
Cpgi22697 X 48409879 to 48410266 387 CpG island CpG island 22697
Elf4 X 48411049 to 48463132 52083 - protein coding gene E74-like factor 4 (ets domain transcription factor)
Tssr163285 X 48419148 to 48419162 14 - TSS region transcription start site region 163285
Tssr163286 X 48429231 to 48429236 5 - TSS region transcription start site region 163286
5033418A18Rik X 48441481 to 48443110 1629 unclassified gene RIKEN cDNA 5033418A18 gene
Cpgi22698 X 48452889 to 48454670 1781 CpG island CpG island 22698
Tssr163287 X 48453741 to 48453762 21 - TSS region transcription start site region 163287
Tssr163288 X 48454152 to 48454193 41 - TSS region transcription start site region 163288
Tssr163289 X 48454222 to 48454243 21 - TSS region transcription start site region 163289
Tssr163290 X 48454273 to 48454301 28 - TSS region transcription start site region 163290
Tssr163291 X 48454312 to 48454325 13 - TSS region transcription start site region 163291
Cpgi22699 X 48462712 to 48463188 476 CpG island CpG island 22699
Tssr163292 X 48463113 to 48463158 45 - TSS region transcription start site region 163292
Aifm1 X 48474944 to 48513563 38619 - protein coding gene apoptosis-inducing factor, mitochondrion-associated 1
Cpgi22700 X 48513207 to 48513784 577 CpG island CpG island 22700
Tssr163293 X 48513385 to 48513438 53 - TSS region transcription start site region 163293
Tssr163294 X 48513444 to 48513459 15 - TSS region transcription start site region 163294
Tssr163295 X 48513518 to 48513565 47 - TSS region transcription start site region 163295
Gm39512 X 48513644 to 48516787 3143 + lncRNA gene predicted gene, 39512
Tssr160902 X 48513850 to 48513855 5 + TSS region transcription start site region 160902
Cpgi22701 X 48519227 to 48519751 524 CpG island CpG island 22701
Tssr160903 X 48519245 to 48519281 36 + TSS region transcription start site region 160903
Rab33a X 48519285 to 48530232 10947 + protein coding gene RAB33A, member RAS oncogene family
Tssr160904 X 48519412 to 48519474 62 + TSS region transcription start site region 160904
Tssr160905 X 48519476 to 48519523 47 + TSS region transcription start site region 160905
Tssr160906 X 48519524 to 48519538 14 + TSS region transcription start site region 160906
Tssr160907 X 48519540 to 48519558 18 + TSS region transcription start site region 160907
Tssr160908 X 48519781 to 48519790 9 + TSS region transcription start site region 160908
Zfp280c X 48541625 to 48594504 52879 - protein coding gene zinc finger protein 280C
Cpgi22702 X 48594095 to 48594647 552 CpG island CpG island 22702
Tssr163296 X 48594383 to 48594493 110 - TSS region transcription start site region 163296
Tssr163297 X 48594569 to 48594585 16 - TSS region transcription start site region 163297
Tssr163298 X 48594610 to 48594635 25 - TSS region transcription start site region 163298
Slc25a14 X 48623418 to 48662298 38880 + protein coding gene solute carrier family 25 (mitochondrial carrier, brain), member 14
Cpgi22703 X 48623585 to 48623919 334 CpG island CpG island 22703
Tssr160909 X 48623737 to 48623790 53 + TSS region transcription start site region 160909
Tssr160910 X 48623800 to 48623811 11 + TSS region transcription start site region 160910
Tssr160911 X 48624556 to 48624560 4 + TSS region transcription start site region 160911
Gm27828 X 48644340 to 48644458 118 + miRNA gene predicted gene, 27828
Gpr119 X 48667979 to 48674478 6499 - protein coding gene G-protein coupled receptor 119
DXMit82 X 48683839 to 48683972 133 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 82
Cpgi22704 X 48694956 to 48695409 453 CpG island CpG island 22704
Rbmx2 X 48695004 to 48710719 15715 + protein coding gene RNA binding motif protein, X-linked 2
Tssr160912 X 48695020 to 48695029 9 + TSS region transcription start site region 160912
Tssr160913 X 48695050 to 48695095 45 + TSS region transcription start site region 160913
Gm7770 X 48711566 to 48712535 969 + pseudogene predicted gene 7770