Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:47880015-48120628

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32 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bw1 X 20740544 to 48090348 27349804 QTL body weight QTL 1
Smarca1 X 47809370 to 47892575 83205 - protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
Cpgi22688 X 47892078 to 47892519 441 CpG island CpG island 22688
Tssr163261 X 47892405 to 47892414 9 - TSS region transcription start site region 163261
Tssr163262 X 47892444 to 47892455 11 - TSS region transcription start site region 163262
Tssr163263 X 47892467 to 47892489 22 - TSS region transcription start site region 163263
Tssr163264 X 47892502 to 47892525 23 - TSS region transcription start site region 163264
Tssr163265 X 47892557 to 47892564 7 - TSS region transcription start site region 163265
Gm14648 X 47900345 to 47900827 482 + pseudogene predicted gene 14648
Tssr160873 X 47902775 to 47902792 17 + TSS region transcription start site region 160873
Ocrl X 47912387 to 47965868 53481 + protein coding gene OCRL, inositol polyphosphate-5-phosphatase
Tssr160874 X 47912432 to 47912442 10 + TSS region transcription start site region 160874
Tssr160875 X 47912445 to 47912464 19 + TSS region transcription start site region 160875
Tssr160876 X 47912469 to 47912481 12 + TSS region transcription start site region 160876
Gm36658 X 48000015 to 48000628 613 + pseudogene predicted gene, 36658
Gm7743 X 48009954 to 48011071 1117 + pseudogene predicted gene 7743
Tssr5618 X 48010416 to 48010431 15 + TSS region transcription start site region 5618
Apln X 48025146 to 48034852 9706 - protein coding gene apelin
Cpgi22689 X 48033784 to 48034836 1052 CpG island CpG island 22689
Tssr163266 X 48034527 to 48034555 28 - TSS region transcription start site region 163266
Tssr163267 X 48034842 to 48034858 16 - TSS region transcription start site region 163267
Tssr160877 X 48056559 to 48056561 2 + TSS region transcription start site region 160877
DXMit48 X 48090244 to 48090348 104 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 48
Tssr163268 X 48098744 to 48098745 1 - TSS region transcription start site region 163268
Tssr160878 X 48106785 to 48106794 9 + TSS region transcription start site region 160878
Tssr160879 X 48106850 to 48106864 14 + TSS region transcription start site region 160879
30.MMHAP16FRB12 X 48107237 to 48107419 182 DNA segment DNA segment, 30.MMHAP16FRB12
Xpnpep2 X 48108725 to 48136981 28256 + protein coding gene X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound
Tssr160880 X 48108891 to 48108906 15 + TSS region transcription start site region 160880
Tssr160881 X 48108912 to 48108964 52 + TSS region transcription start site region 160881
Tssr160882 X 48108995 to 48109006 11 + TSS region transcription start site region 160882
Gct6 X 130864007 to 48090244 -82773763 QTL granulosa cell tumorigenesis 6