Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:47331850-48881864

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149 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bw1 X 20740544 to 48090348 27349804 QTL body weight QTL 1
Fnld X 36795651 to 48683972 11888321 heritable phenotypic marker faint-lined
Gm14609 X 47380433 to 47381334 901 - pseudogene predicted gene 14609
Gm14610 X 47387020 to 47387985 965 - pseudogene predicted gene 14610
Gm5636 X 47433043 to 47436541 3498 - unclassified gene predicted gene 5636
Gm39510 X 47465791 to 47466863 1072 - lncRNA gene predicted gene, 39510
Gm4908 X 47471808 to 47472812 1004 + pseudogene predicted gene 4908
LOC100417627 X 47583196 to 47583869 673 - pseudogene immunoglobulin superfamily, member 1 pseudogene
Gm14608 X 47586018 to 47587561 1543 + pseudogene predicted gene 14608
Gm6480 X 47724569 to 47725979 1410 + pseudogene predicted pseudogene 6480
40.MMHAP76FLF4 X 47776949 to 47777125 176 DNA segment DNA segment, 40.MMHAP76FLF4
Smarca1 X 47809370 to 47892575 83205 - protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
Cpgi22688 X 47892078 to 47892519 441 CpG island CpG island 22688
Tssr163261 X 47892405 to 47892414 9 - TSS region transcription start site region 163261
Tssr163262 X 47892444 to 47892455 11 - TSS region transcription start site region 163262
Tssr163263 X 47892467 to 47892489 22 - TSS region transcription start site region 163263
Tssr163264 X 47892502 to 47892525 23 - TSS region transcription start site region 163264
Tssr163265 X 47892557 to 47892564 7 - TSS region transcription start site region 163265
Gm14648 X 47900345 to 47900827 482 + pseudogene predicted gene 14648
Tssr160873 X 47902775 to 47902792 17 + TSS region transcription start site region 160873
Ocrl X 47912387 to 47965868 53481 + protein coding gene OCRL, inositol polyphosphate-5-phosphatase
Tssr160874 X 47912432 to 47912442 10 + TSS region transcription start site region 160874
Tssr160875 X 47912445 to 47912464 19 + TSS region transcription start site region 160875
Tssr160876 X 47912469 to 47912481 12 + TSS region transcription start site region 160876
Gm36658 X 48000015 to 48000628 613 + pseudogene predicted gene, 36658
Gm7743 X 48009954 to 48011071 1117 + pseudogene predicted gene 7743
Tssr5618 X 48010416 to 48010431 15 + TSS region transcription start site region 5618
Apln X 48025146 to 48034852 9706 - protein coding gene apelin
Cpgi22689 X 48033784 to 48034836 1052 CpG island CpG island 22689
Tssr163266 X 48034527 to 48034555 28 - TSS region transcription start site region 163266
Tssr163267 X 48034842 to 48034858 16 - TSS region transcription start site region 163267
Tssr160877 X 48056559 to 48056561 2 + TSS region transcription start site region 160877
DXMit48 X 48090244 to 48090348 104 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 48
Tssr163268 X 48098744 to 48098745 1 - TSS region transcription start site region 163268
Tssr160878 X 48106785 to 48106794 9 + TSS region transcription start site region 160878
Tssr160879 X 48106850 to 48106864 14 + TSS region transcription start site region 160879
30.MMHAP16FRB12 X 48107237 to 48107419 182 DNA segment DNA segment, 30.MMHAP16FRB12
Xpnpep2 X 48108725 to 48136981 28256 + protein coding gene X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound
Tssr160880 X 48108891 to 48108906 15 + TSS region transcription start site region 160880
Tssr160881 X 48108912 to 48108964 52 + TSS region transcription start site region 160881
Tssr160882 X 48108995 to 48109006 11 + TSS region transcription start site region 160882
Tssr160883 X 48138175 to 48138179 4 + TSS region transcription start site region 160883
Tssr163269 X 48139643 to 48139647 4 - TSS region transcription start site region 163269
Tssr163270 X 48143630 to 48143639 9 - TSS region transcription start site region 163270
Tssr163271 X 48143682 to 48143694 12 - TSS region transcription start site region 163271
Sash3 X 48146436 to 48161565 15129 + protein coding gene SAM and SH3 domain containing 3
Tssr160884 X 48146459 to 48146482 23 + TSS region transcription start site region 160884
Tssr160885 X 48146489 to 48146535 46 + TSS region transcription start site region 160885
Tssr160886 X 48146549 to 48146560 11 + TSS region transcription start site region 160886
Tssr163272 X 48147906 to 48147946 40 - TSS region transcription start site region 163272
Tssr163273 X 48161560 to 48161564 4 - TSS region transcription start site region 163273
Tssr160887 X 48166590 to 48166596 6 + TSS region transcription start site region 160887
Zdhhc9 X 48171967 to 48208702 36735 - protein coding gene zinc finger, DHHC domain containing 9
Tssr163274 X 48173000 to 48173044 44 - TSS region transcription start site region 163274
Tssr163275 X 48173342 to 48173358 16 - TSS region transcription start site region 163275
Cpgi22690 X 48208049 to 48208823 774 CpG island CpG island 22690
Tssr163276 X 48208526 to 48208537 11 - TSS region transcription start site region 163276
Tssr163277 X 48208541 to 48208556 15 - TSS region transcription start site region 163277
Tssr163278 X 48208566 to 48208691 125 - TSS region transcription start site region 163278
Tssr163279 X 48208697 to 48208708 11 - TSS region transcription start site region 163279
Tssr163280 X 48208870 to 48208881 11 - TSS region transcription start site region 163280
Gm24038 X 48230286 to 48230444 158 + snRNA gene predicted gene, 24038
Tssr163281 X 48249213 to 48249217 4 - TSS region transcription start site region 163281
Gm39511 X 48254336 to 48256792 2456 - lncRNA gene predicted gene, 39511
Tssr163282 X 48256658 to 48256673 15 - TSS region transcription start site region 163282
Tssr160888 X 48256854 to 48256865 11 + TSS region transcription start site region 160888
Tssr160889 X 48256881 to 48256928 47 + TSS region transcription start site region 160889
Utp14a X 48256934 to 48282450 25516 + protein coding gene UTP14A small subunit processome component
Tssr160890 X 48270471 to 48270482 11 + TSS region transcription start site region 160890
Tssr160891 X 48274853 to 48274865 12 + TSS region transcription start site region 160891
Tssr160892 X 48274897 to 48274924 27 + TSS region transcription start site region 160892
Tssr160893 X 48274930 to 48274941 11 + TSS region transcription start site region 160893
Tssr160894 X 48275871 to 48275881 10 + TSS region transcription start site region 160894
9530027J09Rik X 48276792 to 48285426 8634 - lincRNA gene RIKEN cDNA 9530027J09 gene
Tssr163283 X 48284268 to 48284276 8 - TSS region transcription start site region 163283
Cpgi22691 X 48284829 to 48285461 632 CpG island CpG island 22691
Cpgi22692 X 48285569 to 48286072 503 CpG island CpG island 22692
Gm22528 X 48299579 to 48299682 103 + snRNA gene predicted gene, 22528
Gm7212 X 48302876 to 48303223 347 - pseudogene predicted gene 7212
Gm22612 X 48307043 to 48307143 100 + snRNA gene predicted gene, 22612
Cpgi22693 X 48314617 to 48315120 503 CpG island CpG island 22693
Tssr163284 X 48314690 to 48314716 26 - TSS region transcription start site region 163284
Cpgi22694 X 48340798 to 48342523 1725 CpG island CpG island 22694
Tssr160895 X 48341344 to 48341418 74 + TSS region transcription start site region 160895
Bcorl1 X 48341358 to 48408049 66691 + protein coding gene BCL6 co-repressor-like 1
Tssr160896 X 48342057 to 48342073 16 + TSS region transcription start site region 160896
Cpgi22695 X 48343495 to 48344272 777 CpG island CpG island 22695
Tssr160897 X 48343702 to 48343723 21 + TSS region transcription start site region 160897
Tssr160898 X 48343758 to 48343776 18 + TSS region transcription start site region 160898
Cpgi22696 X 48344726 to 48345985 1259 CpG island CpG island 22696
Tssr160899 X 48347511 to 48347515 4 + TSS region transcription start site region 160899
Tssr160900 X 48368142 to 48368157 15 + TSS region transcription start site region 160900
Tssr160901 X 48400525 to 48400541 16 + TSS region transcription start site region 160901
Cpgi22697 X 48409879 to 48410266 387 CpG island CpG island 22697
Elf4 X 48411049 to 48463132 52083 - protein coding gene E74-like factor 4 (ets domain transcription factor)
Tssr163285 X 48419148 to 48419162 14 - TSS region transcription start site region 163285
Tssr163286 X 48429231 to 48429236 5 - TSS region transcription start site region 163286
5033418A18Rik X 48441481 to 48443110 1629 unclassified gene RIKEN cDNA 5033418A18 gene
Cpgi22698 X 48452889 to 48454670 1781 CpG island CpG island 22698
Tssr163287 X 48453741 to 48453762 21 - TSS region transcription start site region 163287
Tssr163288 X 48454152 to 48454193 41 - TSS region transcription start site region 163288
Tssr163289 X 48454222 to 48454243 21 - TSS region transcription start site region 163289
Tssr163290 X 48454273 to 48454301 28 - TSS region transcription start site region 163290
Tssr163291 X 48454312 to 48454325 13 - TSS region transcription start site region 163291
Cpgi22699 X 48462712 to 48463188 476 CpG island CpG island 22699
Tssr163292 X 48463113 to 48463158 45 - TSS region transcription start site region 163292
Aifm1 X 48474944 to 48513563 38619 - protein coding gene apoptosis-inducing factor, mitochondrion-associated 1
Cpgi22700 X 48513207 to 48513784 577 CpG island CpG island 22700
Tssr163293 X 48513385 to 48513438 53 - TSS region transcription start site region 163293
Tssr163294 X 48513444 to 48513459 15 - TSS region transcription start site region 163294
Tssr163295 X 48513518 to 48513565 47 - TSS region transcription start site region 163295
Gm39512 X 48513644 to 48516787 3143 + lncRNA gene predicted gene, 39512
Tssr160902 X 48513850 to 48513855 5 + TSS region transcription start site region 160902
Cpgi22701 X 48519227 to 48519751 524 CpG island CpG island 22701
Tssr160903 X 48519245 to 48519281 36 + TSS region transcription start site region 160903
Rab33a X 48519285 to 48530232 10947 + protein coding gene RAB33A, member RAS oncogene family
Tssr160904 X 48519412 to 48519474 62 + TSS region transcription start site region 160904
Tssr160905 X 48519476 to 48519523 47 + TSS region transcription start site region 160905
Tssr160906 X 48519524 to 48519538 14 + TSS region transcription start site region 160906
Tssr160907 X 48519540 to 48519558 18 + TSS region transcription start site region 160907
Tssr160908 X 48519781 to 48519790 9 + TSS region transcription start site region 160908
Zfp280c X 48541625 to 48594504 52879 - protein coding gene zinc finger protein 280C
Cpgi22702 X 48594095 to 48594647 552 CpG island CpG island 22702
Tssr163296 X 48594383 to 48594493 110 - TSS region transcription start site region 163296
Tssr163297 X 48594569 to 48594585 16 - TSS region transcription start site region 163297
Tssr163298 X 48594610 to 48594635 25 - TSS region transcription start site region 163298
Slc25a14 X 48623418 to 48662298 38880 + protein coding gene solute carrier family 25 (mitochondrial carrier, brain), member 14
Cpgi22703 X 48623585 to 48623919 334 CpG island CpG island 22703
Tssr160909 X 48623737 to 48623790 53 + TSS region transcription start site region 160909
Tssr160910 X 48623800 to 48623811 11 + TSS region transcription start site region 160910
Tssr160911 X 48624556 to 48624560 4 + TSS region transcription start site region 160911
Gm27828 X 48644340 to 48644458 118 + miRNA gene predicted gene, 27828
Gpr119 X 48667979 to 48674478 6499 - protein coding gene G-protein coupled receptor 119
DXMit82 X 48683839 to 48683972 133 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 82
Cpgi22704 X 48694956 to 48695409 453 CpG island CpG island 22704
Rbmx2 X 48695004 to 48710719 15715 + protein coding gene RNA binding motif protein, X-linked 2
Tssr160912 X 48695020 to 48695029 9 + TSS region transcription start site region 160912
Tssr160913 X 48695050 to 48695095 45 + TSS region transcription start site region 160913
Gm7770 X 48711566 to 48712535 969 + pseudogene predicted gene 7770
Gm595 X 48841466 to 48877713 36247 - protein coding gene predicted gene 595
Tssr163299 X 48868187 to 48868198 11 - TSS region transcription start site region 163299
Tssr163300 X 48868496 to 48868540 44 - TSS region transcription start site region 163300
Tssr160914 X 48870414 to 48870424 10 + TSS region transcription start site region 160914
Tssr160915 X 48871338 to 48871349 11 + TSS region transcription start site region 160915
Tssr160916 X 48872000 to 48872007 7 + TSS region transcription start site region 160916
Tssr160917 X 48872046 to 48872051 5 + TSS region transcription start site region 160917
Tssr160918 X 48872074 to 48872090 16 + TSS region transcription start site region 160918
Tssr163301 X 48877711 to 48877715 4 - TSS region transcription start site region 163301
Gct6 X 130864007 to 48090244 -82773763 QTL granulosa cell tumorigenesis 6