Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:42407517-46328462

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr160852 X 42424380 to 42424390 10 + TSS region transcription start site region 160852
Tssr160853 X 42432484 to 42432485 1 + TSS region transcription start site region 160853
Tssr160854 X 42432544 to 42432565 21 + TSS region transcription start site region 160854
Tex13d X 42489361 to 42491953 2592 + protein coding gene TEX13 family member D
Tex13c2 X 42489691 to 42491524 1833 + protein coding gene TEX13 family member C2
Cpgi22685 X 42489748 to 42489970 222 CpG island CpG island 22685
Tssr160855 X 42502205 to 42502207 2 + TSS region transcription start site region 160855
Tssr160856 X 42502466 to 42502469 3 + TSS region transcription start site region 160856
Tssr160857 X 42502479 to 42502489 10 + TSS region transcription start site region 160857
Tssr160858 X 42502507 to 42502522 15 + TSS region transcription start site region 160858
Tssr160859 X 42502533 to 42502543 10 + TSS region transcription start site region 160859
Sh2d1a X 42502565 to 42522097 19532 + protein coding gene SH2 domain containing 1A
Tssr160860 X 42502596 to 42502652 56 + TSS region transcription start site region 160860
Tssr160861 X 42504769 to 42504787 18 + TSS region transcription start site region 160861
Tssr160862 X 42505246 to 42505258 12 + TSS region transcription start site region 160862
Tenm1 X 42527866 to 43429126 901260 - protein coding gene teneurin transmembrane protein 1
DXMit243 X 42539110 to 42539258 148 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology-243
Gm23705 X 42681757 to 42681886 129 - snoRNA gene predicted gene, 23705
Gm46667 X 42735832 to 42740084 4252 + pseudogene predicted gene, 46667
Gm14578 X 42888730 to 42889120 390 - pseudogene predicted gene 14578
DXMit1002 X 43029883 to 43030152 269 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 1002
DXMit1003 X 43029964 to 43030079 115 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 1003
Tssr163247 X 43152748 to 43152753 5 - TSS region transcription start site region 163247
Gm24763 X 43254046 to 43254235 189 + snRNA gene predicted gene, 24763
A230106O10Rik X 43367690 to 43368333 643 unclassified gene RIKEN cDNA A230106O10 gene
Gm14587 X 43412086 to 43412743 657 - pseudogene predicted gene 14587
Tssr163248 X 43428845 to 43428862 17 - TSS region transcription start site region 163248
Tssr5616 X 43428926 to 43428929 3 - TSS region transcription start site region 5616
Tssr163249 X 43428947 to 43428956 9 - TSS region transcription start site region 163249
Tssr163250 X 43428970 to 43428985 15 - TSS region transcription start site region 163250
Tssr163251 X 43428986 to 43429013 27 - TSS region transcription start site region 163251
Tssr163252 X 43429028 to 43429050 22 - TSS region transcription start site region 163252
Tssr163253 X 43429055 to 43429069 14 - TSS region transcription start site region 163253
Gm14588 X 43473783 to 43473954 171 - pseudogene predicted gene 14588
Gm14579 X 43589743 to 43590025 282 - pseudogene predicted gene 14579
Tssr160863 X 43590926 to 43590933 7 + TSS region transcription start site region 160863
Tssr160864 X 43590937 to 43590944 7 + TSS region transcription start site region 160864
Tssr160865 X 43590952 to 43590955 3 + TSS region transcription start site region 160865
Tssr160866 X 43590961 to 43590972 11 + TSS region transcription start site region 160866
Tex13c1 X 43591160 to 43593532 2372 + protein coding gene TEX13 family member C1
Gm14580 X 43710611 to 43711114 503 + pseudogene predicted gene 14580
Gm14628 X 43823924 to 43824558 634 + pseudogene predicted gene 14628
Gm14603 X 44313270 to 44313717 447 - pseudogene predicted gene 14603
Dcaf12l2 X 44365457 to 44368337 2880 - protein coding gene DDB1 and CUL4 associated factor 12-like 2
Cpgi22686 X 44367517 to 44368462 945 CpG island CpG island 22686
Tssr163254 X 44368329 to 44368352 23 - TSS region transcription start site region 163254
Gm18437 X 44463258 to 44463870 612 - pseudogene predicted gene, 18437
Itpa-ps3 X 44466839 to 44467233 394 - pseudogene inosine triphosphatase (nucleoside triphosphate pyrophosphatase) pseudogene 3
Gm14602 X 44529451 to 44529790 339 - pseudogene predicted gene 14602
Dcaf12l1 X 44786570 to 44790197 3627 - protein coding gene DDB1 and CUL4 associated factor 12-like 1
Cpgi22687 X 44789160 to 44790287 1127 CpG island CpG island 22687
Tssr163255 X 44789983 to 44790067 84 - TSS region transcription start site region 163255
Tssr163256 X 44790146 to 44790169 23 - TSS region transcription start site region 163256
Tssr163257 X 44790179 to 44790210 31 - TSS region transcription start site region 163257
Tssr163258 X 44790319 to 44790328 9 - TSS region transcription start site region 163258
Gm7700 X 44862880 to 44863849 969 + pseudogene predicted gene 7700
Tssr160867 X 45090882 to 45090893 11 + TSS region transcription start site region 160867
Prr32 X 45090904 to 45092791 1887 + protein coding gene proline rich 32
Tssr160868 X 45090920 to 45090940 20 + TSS region transcription start site region 160868
Gm39508 X 45152250 to 45154246 1996 - lncRNA gene predicted gene, 39508
Gm14606 X 45403694 to 45404808 1114 - pseudogene predicted gene 14606
Gm14605 X 45497853 to 45498874 1021 - pseudogene predicted gene 14605
Gm5386 X 45546931 to 45549380 2449 - pseudogene predicted pseudogene 5386
Gm14652 X 45786326 to 45786560 234 - pseudogene predicted gene 14652
Gm25078 X 45795361 to 45795467 106 - snRNA gene predicted gene, 25078
Tssr5617 X 45940902 to 45940904 2 - TSS region transcription start site region 5617
Gm14653 X 46126999 to 46128531 1532 + pseudogene predicted gene 14653
Tssr160869 X 46156077 to 46156079 2 + TSS region transcription start site region 160869
4930515L19Rik X 46267559 to 46328911 61352 - antisense lncRNA gene RIKEN cDNA 4930515L19 gene
Tssr163259 X 46293461 to 46293475 14 - TSS region transcription start site region 163259