Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:4133858-6545457

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr160353 X 4136295 to 4136316 21 + TSS region transcription start site region 160353
Gm14358 X 4143537 to 4146415 2878 + pseudogene predicted gene 14358
Gm14362 X 4147732 to 4148004 272 - pseudogene predicted gene 14362
Gm14356 X 4192858 to 4193725 867 + pseudogene predicted gene 14356
Btbd35f28 X 4196576 to 4198535 1959 + protein coding gene BTB domain containing 35, family member 28
Btbd35f20 X 4289286 to 4291245 1959 - protein coding gene BTB domain containing 35, family member 20
Gm14348 X 4294124 to 4294991 867 - pseudogene predicted gene 14348
Gm14364 X 4339453 to 4339719 266 + pseudogene predicted gene 14364
Gm14368 X 4341036 to 4343915 2879 - pseudogene predicted gene 14368
Gm15260 X 4366897 to 4367764 867 + pseudogene predicted gene 15260
Btbd35f17 X 4370636 to 4372595 1959 + protein coding gene BTB domain containing 35, family member 17
Gm6019 X 4409489 to 4410192 703 - pseudogene predicted gene 6019
Gm9427 X 4455353 to 4456003 650 + pseudogene predicted pseudogene 9427
Gm46675 X 4496082 to 4515309 19227 - lncRNA gene predicted gene, 46675
Gm15256 X 4511847 to 4512729 882 + pseudogene predicted gene 15256
Gm5925 X 4515674 to 4517170 1496 + pseudogene predicted gene 5925
Gm4725 X 4553787 to 4554370 583 + pseudogene predicted gene 4725
Gm46682 X 4673381 to 4674968 1587 + pseudogene predicted gene, 46682
Gm9498 X 4770778 to 4771068 290 - pseudogene predicted gene 9498
Gm15252 X 4796663 to 4797530 867 + pseudogene predicted gene 15252
Btbd35f4 X 4800496 to 4801986 1490 + protein coding gene BTB domain containing 35, family member 4
Gm4726 X 4839207 to 4839942 735 - pseudogene predicted gene 4726
Gm3757 X 4882412 to 4883086 674 + pseudogene predicted pseudogene 3757
Tssr160354 X 4899361 to 4899381 20 + TSS region transcription start site region 160354
Gm15259 X 4905423 to 4905713 290 + pseudogene predicted gene 15259
Gm15254 X 4906982 to 4907254 272 - pseudogene predicted gene 15254
Gm17860 X 4948407 to 4949274 867 + pseudogene predicted gene, 17860
Btbd35f27 X 4952135 to 4954077 1942 + protein coding gene BTB domain containing 35, family member 27
Gm14370 X 5144852 to 5145719 867 + pseudogene predicted gene 14370
Gm14367 X 5148676 to 5150172 1496 + pseudogene predicted gene 14367
Gm14365 X 5193483 to 5194066 583 + pseudogene predicted gene 14365
Gm9428 X 5276735 to 5277446 711 - pseudogene predicted gene 9428
Gm5924 X 5338858 to 5340457 1599 + pseudogene predicted gene 5924
Gm14369 X 5391640 to 5391924 284 + pseudogene predicted gene 14369
Gm14363 X 5399249 to 5402129 2880 - pseudogene predicted gene 14363
Mycs X 5466904 to 5469265 2361 - protein coding gene myc-like oncogene, s-myc protein
Cpgi22558 X 5467893 to 5468744 851 CpG island CpG island 22558
Cpgi22559 X 5558151 to 5558307 156 CpG island CpG island 22559
Gm14366 X 5608572 to 5609151 579 - pseudogene predicted gene 14366
Gm14375 X 5665372 to 5666226 854 + pseudogene predicted gene 14375
Btbd35f7 X 5669067 to 5671026 1959 + protein coding gene BTB domain containing 35, family member 7
Gm14373 X 5699730 to 5701872 2142 - pseudogene predicted gene 14373
Gm39489 X 5730162 to 5749677 19515 - lncRNA gene predicted gene, 39489
Tssr5581 X 5824088 to 5824090 2 + TSS region transcription start site region 5581
Gm14452 X 5859765 to 5861537 1772 + pseudogene predicted gene 14452
Gm14451 X 5869686 to 5871458 1772 - pseudogene predicted gene 14451
Gm14448 X 5885743 to 5885952 209 - pseudogene predicted gene 14448
Tssr160355 X 5984669 to 5984710 41 + TSS region transcription start site region 160355
Gm14450 X 5984772 to 5985011 239 + pseudogene predicted gene 14450
Gm26618 X 6027056 to 6092269 65213 - sense overlapping lncRNA gene predicted gene, 26618
Nudt11 X 6047507 to 6054751 7244 + protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 11
Rpl19-ps12 X 6071222 to 6071812 590 + pseudogene ribosomal protein L19, pseudogene 12
Gm27360 X 6071478 to 6071557 79 + miRNA gene predicted gene, 27360
AU022751 X 6081219 to 6083419 2200 - protein coding gene expressed sequence AU022751
Cpgi22560 X 6082097 to 6082701 604 CpG island CpG island 22560
Cpgi22561 X 6082962 to 6083432 470 CpG island CpG island 22561
Tssr162767 X 6083415 to 6083423 8 - TSS region transcription start site region 162767
Cpgi22562 X 6092111 to 6092368 257 CpG island CpG island 22562
Gm33733 X 6092424 to 6229711 137287 + lncRNA gene predicted gene, 33733
DXMit101 X 6106713 to 6106833 120 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 101
n-R5s2 X 6106891 to 6107009 118 + rRNA gene nuclear encoded rRNA 5S 2
Nudt10 X 6168696 to 6173015 4319 - protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 10
Tssr162768 X 6171827 to 6171832 5 - TSS region transcription start site region 162768
Gm46685 X 6238400 to 6241113 2713 + lncRNA gene predicted gene, 46685
Bmp15 X 6314107 to 6320721 6614 - protein coding gene bone morphogenetic protein 15
Tssr162769 X 6320717 to 6320726 9 - TSS region transcription start site region 162769
Tssr5582 X 6346291 to 6346292 1 + TSS region transcription start site region 5582
Cpgi22563 X 6399669 to 6400929 1260 CpG island CpG island 22563
Shroom4 X 6399940 to 6637454 237514 + protein coding gene shroom family member 4
Tssr160356 X 6400027 to 6400061 34 + TSS region transcription start site region 160356
Tssr160357 X 6400076 to 6400109 33 + TSS region transcription start site region 160357
Tssr160358 X 6400111 to 6400144 33 + TSS region transcription start site region 160358
Tssr5583 X 6415697 to 6415712 15 + TSS region transcription start site region 5583
Tssr160359 X 6415725 to 6415730 5 + TSS region transcription start site region 160359
Tssr160360 X 6415736 to 6415747 11 + TSS region transcription start site region 160360
Tssr160361 X 6416941 to 6416955 14 + TSS region transcription start site region 160361
5430428K19Rik X 6452376 to 6574663 122287 - lncRNA gene RIKEN cDNA 5430428K19 gene
DXMit204 X 6488876 to 6489049 173 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 204
DXMit203 X 6502911 to 6503060 149 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 203