Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:40694464-43444469

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132 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spha1 X 10399986 to 40832775 30432789 QTL sperm head anomaly 1
Tssr160795 X 40712886 to 40712888 2 + TSS region transcription start site region 160795
Spha2 X 40832621 to 87216531 46383910 QTL sperm head anomaly 2
DXMit50 X 40832621 to 40832775 154 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 50
Gm14576 X 40927001 to 40928111 1110 - pseudogene predicted gene 14576
Gm5385 X 41248575 to 41250133 1558 + pseudogene predicted gene 5385
Tssr163236 X 41288879 to 41288884 5 - TSS region transcription start site region 163236
Tssr163237 X 41335872 to 41335879 7 - TSS region transcription start site region 163237
Gm14577 X 41372259 to 41372498 239 + pseudogene predicted gene 14577
Tssr160796 X 41400598 to 41400603 5 + TSS region transcription start site region 160796
Tssr160797 X 41400657 to 41400668 11 + TSS region transcription start site region 160797
Tssr160798 X 41400687 to 41400700 13 + TSS region transcription start site region 160798
Tssr160799 X 41400716 to 41400729 13 + TSS region transcription start site region 160799
Tssr160800 X 41400805 to 41400833 28 + TSS region transcription start site region 160800
Tssr160801 X 41400839 to 41400885 46 + TSS region transcription start site region 160801
Tssr160802 X 41400902 to 41400907 5 + TSS region transcription start site region 160802
Gria3 X 41401118 to 41678601 277483 + protein coding gene glutamate receptor, ionotropic, AMPA3 (alpha 3)
Tssr160803 X 41401158 to 41401200 42 + TSS region transcription start site region 160803
Tssr160804 X 41401389 to 41401427 38 + TSS region transcription start site region 160804
Tssr160805 X 41401476 to 41401565 89 + TSS region transcription start site region 160805
Tssr160806 X 41401614 to 41401625 11 + TSS region transcription start site region 160806
Tssr160807 X 41414949 to 41414959 10 + TSS region transcription start site region 160807
DXMit58 X 41560036 to 41560235 199 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology-58
Tssr160808 X 41604795 to 41604799 4 + TSS region transcription start site region 160808
C030001C17Rik X 41627628 to 41628504 876 unclassified gene RIKEN cDNA C030001C17 gene
Gm22413 X 41654234 to 41654318 84 + miRNA gene predicted gene, 22413
A230058F20Rik X 41660673 to 41664187 3514 unclassified gene RIKEN cDNA A230058F20 gene
Tssr160809 X 41673846 to 41673854 8 + TSS region transcription start site region 160809
Gm14614 X 41685994 to 41686377 383 - pseudogene predicted gene 14614
Gm14613 X 41741657 to 41742963 1306 - pseudogene predicted gene 14613
Thoc2 X 41794992 to 41911919 116927 - protein coding gene THO complex 2
Tssr163238 X 41796805 to 41796826 21 - TSS region transcription start site region 163238
Tssr163239 X 41822411 to 41822446 35 - TSS region transcription start site region 163239
Tssr163240 X 41823517 to 41823545 28 - TSS region transcription start site region 163240
Tssr163241 X 41843273 to 41843277 4 - TSS region transcription start site region 163241
DXMit202 X 41896257 to 41896366 109 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology-202
Cpgi22683 X 41911046 to 41912066 1020 CpG island CpG island 22683
Tssr163242 X 41911877 to 41911912 35 - TSS region transcription start site region 163242
Gm7657 X 41916416 to 41917081 665 + pseudogene predicted gene 7657
Gm19069 X 41917200 to 41917781 581 + pseudogene predicted gene, 19069
Gm5135 X 41923255 to 41923827 572 - pseudogene predicted pseudogene 5135
Gm19190 X 41924569 to 41925988 1419 + pseudogene predicted gene, 19190
Gm44490 X 41948832 to 41948958 126 + miRNA gene predicted gene, 44490
Tssr160810 X 41954379 to 41954387 8 + TSS region transcription start site region 160810
Tssr160811 X 42059530 to 42059540 10 + TSS region transcription start site region 160811
Tssr160812 X 42059603 to 42059664 61 + TSS region transcription start site region 160812
Xiap X 42059679 to 42109656 49977 + protein coding gene X-linked inhibitor of apoptosis
Tssr160813 X 42059904 to 42059926 22 + TSS region transcription start site region 160813
Tssr160814 X 42060388 to 42060399 11 + TSS region transcription start site region 160814
Tssr160815 X 42060422 to 42060439 17 + TSS region transcription start site region 160815
Tssr160816 X 42066529 to 42066540 11 + TSS region transcription start site region 160816
Tssr160817 X 42066549 to 42066561 12 + TSS region transcription start site region 160817
Tssr160818 X 42066568 to 42066589 21 + TSS region transcription start site region 160818
Tssr160819 X 42067839 to 42067872 33 + TSS region transcription start site region 160819
Tssr160820 X 42067876 to 42067887 11 + TSS region transcription start site region 160820
Tssr160821 X 42067959 to 42067998 39 + TSS region transcription start site region 160821
Tssr160822 X 42068026 to 42068037 11 + TSS region transcription start site region 160822
Tssr160823 X 42068222 to 42068232 10 + TSS region transcription start site region 160823
Tssr160824 X 42068324 to 42068361 37 + TSS region transcription start site region 160824
Tssr160825 X 42068366 to 42068388 22 + TSS region transcription start site region 160825
Tssr160826 X 42068422 to 42068447 25 + TSS region transcription start site region 160826
Tssr160827 X 42068450 to 42068472 22 + TSS region transcription start site region 160827
Tssr160828 X 42068676 to 42068766 90 + TSS region transcription start site region 160828
Tssr160829 X 42069464 to 42069469 5 + TSS region transcription start site region 160829
Tssr160830 X 42075603 to 42075617 14 + TSS region transcription start site region 160830
DXMit104 X 42091402 to 42091540 138 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 104
Tssr160831 X 42108372 to 42108384 12 + TSS region transcription start site region 160831
Tssr163243 X 42113841 to 42113845 4 - TSS region transcription start site region 163243
Gm14615 X 42128195 to 42130723 2528 - pseudogene predicted gene 14615
Tssr160832 X 42140032 to 42140064 32 + TSS region transcription start site region 160832
Gm37564 X 42147988 to 42150181 2193 - unclassified gene predicted gene, 37564
Cpgi22684 X 42148761 to 42150594 1833 CpG island CpG island 22684
Tssr163244 X 42149027 to 42149041 14 - TSS region transcription start site region 163244
Tssr160833 X 42149288 to 42149306 18 + TSS region transcription start site region 160833
Tssr160834 X 42149316 to 42149327 11 + TSS region transcription start site region 160834
Stag2 X 42149319 to 42277186 127867 + protein coding gene stromal antigen 2
Tssr163245 X 42149347 to 42149352 5 - TSS region transcription start site region 163245
Tssr160835 X 42149534 to 42149547 13 + TSS region transcription start site region 160835
Tssr160836 X 42150146 to 42150168 22 + TSS region transcription start site region 160836
Tssr160837 X 42150672 to 42150721 49 + TSS region transcription start site region 160837
Tssr160838 X 42150726 to 42150751 25 + TSS region transcription start site region 160838
Tssr160839 X 42150755 to 42150767 12 + TSS region transcription start site region 160839
Tssr160840 X 42150777 to 42150781 4 + TSS region transcription start site region 160840
Tssr160841 X 42151002 to 42151019 17 + TSS region transcription start site region 160841
Tssr160842 X 42151028 to 42151068 40 + TSS region transcription start site region 160842
Tssr160843 X 42152172 to 42152195 23 + TSS region transcription start site region 160843
Tssr160844 X 42152369 to 42152379 10 + TSS region transcription start site region 160844
Tssr160845 X 42155475 to 42155498 23 + TSS region transcription start site region 160845
A130057A22Rik X 42177346 to 42179235 1889 unclassified gene RIKEN cDNA A130057A22 gene
Tssr5615 X 42227566 to 42227570 4 + TSS region transcription start site region 5615
Tssr160846 X 42237752 to 42237755 3 + TSS region transcription start site region 160846
Tssr160847 X 42238592 to 42238604 12 + TSS region transcription start site region 160847
Tssr160848 X 42241070 to 42241092 22 + TSS region transcription start site region 160848
Tssr160849 X 42275266 to 42275281 15 + TSS region transcription start site region 160849
Gm14619 X 42347512 to 42347679 167 + pseudogene predicted gene 14619
Tssr160850 X 42360691 to 42360763 72 + TSS region transcription start site region 160850
Tssr163246 X 42365458 to 42365468 10 - TSS region transcription start site region 163246
Tssr160851 X 42374620 to 42374625 5 + TSS region transcription start site region 160851
B230118I11Rik X 42381014 to 42406629 25615 + lncRNA gene RIKEN cDNA B230118I11 gene
Tssr160852 X 42424380 to 42424390 10 + TSS region transcription start site region 160852
Tssr160853 X 42432484 to 42432485 1 + TSS region transcription start site region 160853
Tssr160854 X 42432544 to 42432565 21 + TSS region transcription start site region 160854
Tex13d X 42489361 to 42491953 2592 + protein coding gene TEX13 family member D
Tex13c2 X 42489691 to 42491524 1833 + protein coding gene TEX13 family member C2
Cpgi22685 X 42489748 to 42489970 222 CpG island CpG island 22685
Tssr160855 X 42502205 to 42502207 2 + TSS region transcription start site region 160855
Tssr160856 X 42502466 to 42502469 3 + TSS region transcription start site region 160856
Tssr160857 X 42502479 to 42502489 10 + TSS region transcription start site region 160857
Tssr160858 X 42502507 to 42502522 15 + TSS region transcription start site region 160858
Tssr160859 X 42502533 to 42502543 10 + TSS region transcription start site region 160859
Sh2d1a X 42502565 to 42522097 19532 + protein coding gene SH2 domain containing 1A
Tssr160860 X 42502596 to 42502652 56 + TSS region transcription start site region 160860
Tssr160861 X 42504769 to 42504787 18 + TSS region transcription start site region 160861
Tssr160862 X 42505246 to 42505258 12 + TSS region transcription start site region 160862
Tenm1 X 42527866 to 43429126 901260 - protein coding gene teneurin transmembrane protein 1
DXMit243 X 42539110 to 42539258 148 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology-243
Gm23705 X 42681757 to 42681886 129 - snoRNA gene predicted gene, 23705
Gm46667 X 42735832 to 42740084 4252 + pseudogene predicted gene, 46667
Gm14578 X 42888730 to 42889120 390 - pseudogene predicted gene 14578
DXMit1002 X 43029883 to 43030152 269 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 1002
DXMit1003 X 43029964 to 43030079 115 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 1003
Tssr163247 X 43152748 to 43152753 5 - TSS region transcription start site region 163247
Gm24763 X 43254046 to 43254235 189 + snRNA gene predicted gene, 24763
A230106O10Rik X 43367690 to 43368333 643 unclassified gene RIKEN cDNA A230106O10 gene
Gm14587 X 43412086 to 43412743 657 - pseudogene predicted gene 14587
Tssr163248 X 43428845 to 43428862 17 - TSS region transcription start site region 163248
Tssr5616 X 43428926 to 43428929 3 - TSS region transcription start site region 5616
Tssr163249 X 43428947 to 43428956 9 - TSS region transcription start site region 163249
Tssr163250 X 43428970 to 43428985 15 - TSS region transcription start site region 163250
Tssr163251 X 43428986 to 43429013 27 - TSS region transcription start site region 163251
Tssr163252 X 43429028 to 43429050 22 - TSS region transcription start site region 163252
Tssr163253 X 43429055 to 43429069 14 - TSS region transcription start site region 163253