Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:38380500-41965561

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143 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spha1 X 10399986 to 40832775 30432789 QTL sperm head anomaly 1
Tssr160787 X 38396886 to 38396888 2 + TSS region transcription start site region 160787
Gm4853 X 38396935 to 38397328 393 + pseudogene predicted pseudogene 4853
Lamp2 X 38401357 to 38456454 55097 - protein coding gene lysosomal-associated membrane protein 2
Tssr163184 X 38405490 to 38405527 37 - TSS region transcription start site region 163184
Tssr163185 X 38406659 to 38406679 20 - TSS region transcription start site region 163185
Tssr163186 X 38406705 to 38406727 22 - TSS region transcription start site region 163186
Tssr163187 X 38406732 to 38406767 35 - TSS region transcription start site region 163187
Tssr163188 X 38406799 to 38406812 13 - TSS region transcription start site region 163188
Tssr163189 X 38406841 to 38406862 21 - TSS region transcription start site region 163189
Tssr163190 X 38407534 to 38407604 70 - TSS region transcription start site region 163190
Tssr163191 X 38420389 to 38420403 14 - TSS region transcription start site region 163191
Tssr163192 X 38420892 to 38420911 19 - TSS region transcription start site region 163192
Tssr163193 X 38420990 to 38421003 13 - TSS region transcription start site region 163193
Tssr163194 X 38424297 to 38424308 11 - TSS region transcription start site region 163194
Tssr163195 X 38424341 to 38424360 19 - TSS region transcription start site region 163195
Tssr163196 X 38431017 to 38431049 32 - TSS region transcription start site region 163196
Tssr163197 X 38431978 to 38432058 80 - TSS region transcription start site region 163197
Tssr163198 X 38435164 to 38435179 15 - TSS region transcription start site region 163198
Tssr163199 X 38435427 to 38435450 23 - TSS region transcription start site region 163199
Tssr163200 X 38435471 to 38435486 15 - TSS region transcription start site region 163200
Tssr163201 X 38435542 to 38435560 18 - TSS region transcription start site region 163201
Tssr163202 X 38440168 to 38440200 32 - TSS region transcription start site region 163202
Tssr163203 X 38440217 to 38440237 20 - TSS region transcription start site region 163203
Tssr163204 X 38440272 to 38440301 29 - TSS region transcription start site region 163204
Tssr163205 X 38440307 to 38440318 11 - TSS region transcription start site region 163205
Tssr163206 X 38442052 to 38442073 21 - TSS region transcription start site region 163206
Tssr163207 X 38442082 to 38442110 28 - TSS region transcription start site region 163207
Tssr163208 X 38442122 to 38442143 21 - TSS region transcription start site region 163208
Tssr163209 X 38454808 to 38454810 2 - TSS region transcription start site region 163209
Cpgi22680 X 38456243 to 38456472 229 CpG island CpG island 22680
Tssr163210 X 38456407 to 38456458 51 - TSS region transcription start site region 163210
Gm7598 X 38479543 to 38480835 1292 + lincRNA gene predicted gene 7598
Gm9488 X 38502123 to 38506164 4041 + pseudogene predicted gene 9488
Cul4b X 38533274 to 38576196 42922 - protein coding gene cullin 4B
Tssr163211 X 38564062 to 38564086 24 - TSS region transcription start site region 163211
Tssr163212 X 38564122 to 38564145 23 - TSS region transcription start site region 163212
Tssr163213 X 38564153 to 38564163 10 - TSS region transcription start site region 163213
Tssr163214 X 38564190 to 38564207 17 - TSS region transcription start site region 163214
Tssr163215 X 38564287 to 38564334 47 - TSS region transcription start site region 163215
Tssr163216 X 38564345 to 38564359 14 - TSS region transcription start site region 163216
Cpgi22681 X 38564388 to 38565088 700 CpG island CpG island 22681
Tssr163217 X 38564519 to 38564555 36 - TSS region transcription start site region 163217
Tssr163218 X 38564635 to 38564671 36 - TSS region transcription start site region 163218
Tssr163219 X 38564890 to 38564895 5 - TSS region transcription start site region 163219
Tssr163220 X 38564925 to 38564934 9 - TSS region transcription start site region 163220
Tssr163221 X 38564953 to 38564962 9 - TSS region transcription start site region 163221
Tssr163222 X 38564991 to 38565024 33 - TSS region transcription start site region 163222
Tssr163223 X 38565034 to 38565047 13 - TSS region transcription start site region 163223
Tssr163224 X 38566588 to 38566599 11 - TSS region transcription start site region 163224
Tssr163225 X 38576166 to 38576187 21 - TSS region transcription start site region 163225
Tssr163226 X 38576189 to 38576204 15 - TSS region transcription start site region 163226
Tssr163227 X 38587218 to 38587253 35 - TSS region transcription start site region 163227
Tssr160788 X 38600449 to 38600460 11 + TSS region transcription start site region 160788
Mcts1 X 38600578 to 38613426 12848 + protein coding gene malignant T cell amplified sequence 1
Tssr160789 X 38600590 to 38600597 7 + TSS region transcription start site region 160789
Tssr160790 X 38600626 to 38600691 65 + TSS region transcription start site region 160790
Tssr160791 X 38600858 to 38600888 30 + TSS region transcription start site region 160791
Tssr160792 X 38601209 to 38601274 65 + TSS region transcription start site region 160792
Tssr160793 X 38607318 to 38607321 3 + TSS region transcription start site region 160793
C1galt1c1 X 38630785 to 38635087 4302 - protein coding gene C1GALT1-specific chaperone 1
Cpgi22682 X 38634934 to 38635462 528 CpG island CpG island 22682
Tssr163228 X 38635003 to 38635012 9 - TSS region transcription start site region 163228
Tssr163229 X 38635020 to 38635035 15 - TSS region transcription start site region 163229
Tssr163230 X 38635037 to 38635042 5 - TSS region transcription start site region 163230
Tssr163231 X 38635044 to 38635063 19 - TSS region transcription start site region 163231
Tssr163232 X 38635066 to 38635093 27 - TSS region transcription start site region 163232
Tssr163233 X 38635095 to 38635148 53 - TSS region transcription start site region 163233
Gm18436 X 38636596 to 38637214 618 - pseudogene predicted gene, 18436
DXMit241 X 38645666 to 38645803 137 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology-241
Ap3s1-ps1 X 38685592 to 38686170 578 - pseudogene adaptor-related protein complex 3, sigma 1 subunit, pseudogene 1
Gm14565 X 38705481 to 38737762 32281 - lincRNA gene predicted gene 14565
Gm25642 X 38752062 to 38752127 65 - miRNA gene predicted gene, 25642
Gm14564 X 38762743 to 38763036 293 + pseudogene predicted gene 14564
6030498E09Rik X 38772780 to 38962688 189908 + protein coding gene RIKEN cDNA 6030498E09 gene
Gm6024 X 38905071 to 38906628 1557 - pseudogene predicted gene 6024
Gm14567 X 38969817 to 38969990 173 + pseudogene predicted gene 14567
Tssr163234 X 39014108 to 39014120 12 - TSS region transcription start site region 163234
Gm18613 X 39040352 to 39041493 1141 - pseudogene predicted gene, 18613
Gm16423 X 39112961 to 39113677 716 - pseudogene predicted gene 16423
Gm14551 X 39119656 to 39119911 255 + pseudogene predicted gene 14551
Gm14566 X 39226328 to 39226648 320 - pseudogene predicted gene 14566
DXMit165 X 39244067 to 39244183 116 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 165
Gm26437 X 39305377 to 39305481 104 - snRNA gene predicted gene, 26437
Tssr160794 X 39346264 to 39346266 2 + TSS region transcription start site region 160794
Cypt15 X 39346267 to 39346963 696 + protein coding gene cysteine-rich perinuclear theca 15
Gm14550 X 39464779 to 39465185 406 - pseudogene predicted gene 14550
Gm14570 X 39750826 to 39751216 390 - pseudogene predicted gene 14570
Gm14571 X 39796584 to 39797153 569 + pseudogene predicted gene 14571
Cypt14 X 39862919 to 39863604 685 - protein coding gene cysteine-rich perinuclear theca 14
Gm14643 X 39870500 to 40475561 605061 + unclassified non-coding RNA gene predicted gene 14643
Gm26194 X 39976301 to 39976371 70 - miRNA gene predicted gene, 26194
Gm7189 X 40000782 to 40001210 428 - pseudogene predicted pseudogene 7189
Gm16383 X 40001217 to 40001887 670 + pseudogene predicted gene 16383
Gm7190 X 40007137 to 40008588 1451 - pseudogene predicted gene 7190
Gm4986 X 40137008 to 40137556 548 - pseudogene predicted pseudogene 4986
Tssr163235 X 40137584 to 40137592 8 - TSS region transcription start site region 163235
Gm17859 X 40560864 to 40561891 1027 - pseudogene predicted gene, 17859
Gm14575 X 40661423 to 40661979 556 + pseudogene predicted gene 14575
Gm14574 X 40691785 to 40692063 278 + pseudogene predicted gene 14574
Tssr160795 X 40712886 to 40712888 2 + TSS region transcription start site region 160795
DXMit50 X 40832621 to 40832775 154 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 50
Spha2 X 40832621 to 87216531 46383910 QTL sperm head anomaly 2
Gm14576 X 40927001 to 40928111 1110 - pseudogene predicted gene 14576
Gm5385 X 41248575 to 41250133 1558 + pseudogene predicted gene 5385
Tssr163236 X 41288879 to 41288884 5 - TSS region transcription start site region 163236
Tssr163237 X 41335872 to 41335879 7 - TSS region transcription start site region 163237
Gm14577 X 41372259 to 41372498 239 + pseudogene predicted gene 14577
Tssr160796 X 41400598 to 41400603 5 + TSS region transcription start site region 160796
Tssr160797 X 41400657 to 41400668 11 + TSS region transcription start site region 160797
Tssr160798 X 41400687 to 41400700 13 + TSS region transcription start site region 160798
Tssr160799 X 41400716 to 41400729 13 + TSS region transcription start site region 160799
Tssr160800 X 41400805 to 41400833 28 + TSS region transcription start site region 160800
Tssr160801 X 41400839 to 41400885 46 + TSS region transcription start site region 160801
Tssr160802 X 41400902 to 41400907 5 + TSS region transcription start site region 160802
Gria3 X 41401118 to 41678601 277483 + protein coding gene glutamate receptor, ionotropic, AMPA3 (alpha 3)
Tssr160803 X 41401158 to 41401200 42 + TSS region transcription start site region 160803
Tssr160804 X 41401389 to 41401427 38 + TSS region transcription start site region 160804
Tssr160805 X 41401476 to 41401565 89 + TSS region transcription start site region 160805
Tssr160806 X 41401614 to 41401625 11 + TSS region transcription start site region 160806
Tssr160807 X 41414949 to 41414959 10 + TSS region transcription start site region 160807
DXMit58 X 41560036 to 41560235 199 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology-58
Tssr160808 X 41604795 to 41604799 4 + TSS region transcription start site region 160808
C030001C17Rik X 41627628 to 41628504 876 unclassified gene RIKEN cDNA C030001C17 gene
Gm22413 X 41654234 to 41654318 84 + miRNA gene predicted gene, 22413
A230058F20Rik X 41660673 to 41664187 3514 unclassified gene RIKEN cDNA A230058F20 gene
Tssr160809 X 41673846 to 41673854 8 + TSS region transcription start site region 160809
Gm14614 X 41685994 to 41686377 383 - pseudogene predicted gene 14614
Gm14613 X 41741657 to 41742963 1306 - pseudogene predicted gene 14613
Thoc2 X 41794992 to 41911919 116927 - protein coding gene THO complex 2
Tssr163238 X 41796805 to 41796826 21 - TSS region transcription start site region 163238
Tssr163239 X 41822411 to 41822446 35 - TSS region transcription start site region 163239
Tssr163240 X 41823517 to 41823545 28 - TSS region transcription start site region 163240
Tssr163241 X 41843273 to 41843277 4 - TSS region transcription start site region 163241
DXMit202 X 41896257 to 41896366 109 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology-202
Cpgi22683 X 41911046 to 41912066 1020 CpG island CpG island 22683
Tssr163242 X 41911877 to 41911912 35 - TSS region transcription start site region 163242
Gm7657 X 41916416 to 41917081 665 + pseudogene predicted gene 7657
Gm19069 X 41917200 to 41917781 581 + pseudogene predicted gene, 19069
Gm5135 X 41923255 to 41923827 572 - pseudogene predicted pseudogene 5135
Gm19190 X 41924569 to 41925988 1419 + pseudogene predicted gene, 19190
Gm44490 X 41948832 to 41948958 126 + miRNA gene predicted gene, 44490
Tssr160810 X 41954379 to 41954387 8 + TSS region transcription start site region 160810