Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:38096573-38352439

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31 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rhox12 X 38104077 to 38110907 6830 - protein coding gene reproductive homeobox 12
Tssr163179 X 38110913 to 38110920 7 - TSS region transcription start site region 163179
Cpgi22676 X 38121086 to 38121901 815 CpG island CpG island 22676
Tssr160776 X 38121174 to 38121189 15 + TSS region transcription start site region 160776
Rhox13 X 38121219 to 38129967 8748 + protein coding gene reproductive homeobox 13
Gm39506 X 38121869 to 38158422 36553 - lncRNA gene predicted gene, 39506
Tssr160777 X 38179884 to 38179891 7 + TSS region transcription start site region 160777
Tssr160778 X 38180597 to 38180613 16 + TSS region transcription start site region 160778
Zfp36l1-ps X 38180728 to 38181626 898 + pseudogene zinc finger protein 36, C3H type-like 1, pseudogene
Cpgi22677 X 38181030 to 38181307 277 CpG island CpG island 22677
Cpgi22678 X 38189506 to 38190430 924 CpG island CpG island 22678
Tssr160779 X 38189732 to 38189750 18 + TSS region transcription start site region 160779
Tssr160780 X 38189780 to 38189826 46 + TSS region transcription start site region 160780
Zbtb33 X 38189793 to 38197046 7253 + protein coding gene zinc finger and BTB domain containing 33
Tssr160781 X 38189829 to 38189842 13 + TSS region transcription start site region 160781
Tssr160782 X 38189850 to 38189865 15 + TSS region transcription start site region 160782
Tmem255a X 38196573 to 38252439 55866 - protein coding gene transmembrane protein 255A
Mir3110 X 38210441 to 38210520 79 + miRNA gene microRNA 3110
Tssr163180 X 38224618 to 38224621 3 - TSS region transcription start site region 163180
Gm39507 X 38226965 to 38233654 6689 + lncRNA gene predicted gene, 39507
Tssr163181 X 38252398 to 38252436 38 - TSS region transcription start site region 163181
Cpgi22679 X 38252406 to 38252564 158 CpG island CpG island 22679
Tssr163182 X 38252447 to 38252465 18 - TSS region transcription start site region 163182
Tssr163183 X 38252529 to 38252541 12 - TSS region transcription start site region 163183
Gm17901 X 38285588 to 38286114 526 - pseudogene predicted gene, 17901
Rhox7-ps1 X 38296868 to 38306028 9160 + pseudogene reproductive homeobox 7, pseudogene 1
Tssr160783 X 38316148 to 38316165 17 + TSS region transcription start site region 160783
Tssr160784 X 38316177 to 38316193 16 + TSS region transcription start site region 160784
Atp1b4 X 38316184 to 38336769 20585 + protein coding gene ATPase, (Na+)/K+ transporting, beta 4 polypeptide
Tssr160785 X 38320477 to 38320479 2 + TSS region transcription start site region 160785
Tssr160786 X 38329032 to 38329034 2 + TSS region transcription start site region 160786