Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:37528199-38553114

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121 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rhox2e X 37530452 to 37541813 11361 + protein coding gene reproductive homeobox 2E
Rhox3e X 37546975 to 37550897 3922 + protein coding gene reproductive homeobox 3E
Rhox4e X 37557412 to 37562283 4871 + protein coding gene reproductive homeobox 4E
Gm38640 X 37567741 to 37581396 13655 - lncRNA gene predicted gene, 38640
Rhox2f X 37571421 to 37576159 4738 + protein coding gene reproductive homeobox 2F
Rhox3f X 37581352 to 37585496 4144 + protein coding gene reproductive homeobox 3F
Rhox4f X 37602895 to 37607686 4791 - protein coding gene reproductive homeobox 4F
Rhox3g X 37623431 to 37628139 4708 - protein coding gene reproductive homeobox 3G
Dppa3-ps X 37625647 to 37626097 450 - pseudogene developmental pluripotency-associated 3, pseudogene
Gm24493 X 37632205 to 37632347 142 - snoRNA gene predicted gene, 24493
Rhox2g X 37639115 to 37643470 4355 - protein coding gene reproductive homeobox 2G
Rhox4g X 37646501 to 37651327 4826 - protein coding gene reproductive homeobox 4G
Rhox3h X 37657688 to 37668764 11076 - protein coding gene reproductive homeobox 3H
Gm24147 X 37667233 to 37667376 143 - snoRNA gene predicted gene, 24147
Rhox2h X 37668997 to 37673277 4280 - protein coding gene reproductive homeobox 2H
Rhox7-ps2 X 37676370 to 37679547 3177 - pseudogene reproductive homeobox 7, pseudogene 2
Rhox2-ps X 37682921 to 37683431 510 - pseudogene reproductive homeobox 2, pseudogene
Tssr5611 X 37753936 to 37753937 1 + TSS region transcription start site region 5611
Tssr5612 X 37754591 to 37754633 42 + TSS region transcription start site region 5612
Tssr5613 X 37804760 to 37804778 18 + TSS region transcription start site region 5613
Rhox5 X 37804842 to 37808876 4034 + protein coding gene reproductive homeobox 5
Tssr5614 X 37805217 to 37805232 15 - TSS region transcription start site region 5614
Gm34522 X 37816375 to 37817607 1232 - lncRNA gene predicted gene, 34522
Tssr160770 X 37826955 to 37826962 7 + TSS region transcription start site region 160770
Tssr160771 X 37827007 to 37827010 3 + TSS region transcription start site region 160771
Tssr160772 X 37827013 to 37827019 6 + TSS region transcription start site region 160772
Tssr160773 X 37827044 to 37827047 3 + TSS region transcription start site region 160773
Rhox6 X 37827055 to 37829857 2802 + protein coding gene reproductive homeobox 6
Tssr160774 X 37827361 to 37827425 64 + TSS region transcription start site region 160774
Rhox7a X 37831686 to 37841171 9485 + protein coding gene reproductive homeobox 7A
Rhox8 X 37874778 to 37878944 4166 - protein coding gene reproductive homeobox 8
Tssr163165 X 37878486 to 37878498 12 - TSS region transcription start site region 163165
Tssr163166 X 37878507 to 37878512 5 - TSS region transcription start site region 163166
Tssr163167 X 37878521 to 37878533 12 - TSS region transcription start site region 163167
Tssr163168 X 37878562 to 37878565 3 - TSS region transcription start site region 163168
Tssr163169 X 37878586 to 37878602 16 - TSS region transcription start site region 163169
Tssr163170 X 37878815 to 37878820 5 - TSS region transcription start site region 163170
Tssr163171 X 37878827 to 37878848 21 - TSS region transcription start site region 163171
Tssr163172 X 37879033 to 37879037 4 - TSS region transcription start site region 163172
Rhox7b X 37886547 to 37897232 10685 - protein coding gene reproductive homeobox 7B
Rhox9 X 37899097 to 37901770 2673 - protein coding gene reproductive homeobox 9
Tssr163173 X 37901350 to 37901365 15 - TSS region transcription start site region 163173
Tssr163174 X 37901367 to 37901379 12 - TSS region transcription start site region 163174
Tssr163175 X 37901383 to 37901410 27 - TSS region transcription start site region 163175
Rhox11-ps1 X 37932474 to 37933483 1009 - pseudogene reproductive homeobox 11, pseudogene 1
Rhox11-ps2 X 37940816 to 37945602 4786 - pseudogene reproductive homeobox 11, pseudogene 2
Tssr163176 X 37945654 to 37945675 21 - TSS region transcription start site region 163176
Btg1-ps1 X 38013173 to 38018815 5642 - pseudogene B cell translocation gene 1, anti-proliferative, pseudogene 1
Btg1-ps2 X 38038199 to 38043114 4915 - pseudogene B cell translocation gene 1, anti-proliferative, pseudogene 2
Tssr163177 X 38043105 to 38043137 32 - TSS region transcription start site region 163177
Rhox10 X 38066475 to 38071688 5213 + protein coding gene reproductive homeobox 10
Tssr160775 X 38066538 to 38066547 9 + TSS region transcription start site region 160775
Tssr163178 X 38067309 to 38067349 40 - TSS region transcription start site region 163178
Rhox11 X 38076598 to 38085139 8541 - protein coding gene reproductive homeobox 11
Rhox11-ps3 X 38089842 to 38090074 232 + pseudogene reproductive homeobox 11, pseudogene 3
Rhox12 X 38104077 to 38110907 6830 - protein coding gene reproductive homeobox 12
Tssr163179 X 38110913 to 38110920 7 - TSS region transcription start site region 163179
Cpgi22676 X 38121086 to 38121901 815 CpG island CpG island 22676
Tssr160776 X 38121174 to 38121189 15 + TSS region transcription start site region 160776
Rhox13 X 38121219 to 38129967 8748 + protein coding gene reproductive homeobox 13
Gm39506 X 38121869 to 38158422 36553 - lncRNA gene predicted gene, 39506
Tssr160777 X 38179884 to 38179891 7 + TSS region transcription start site region 160777
Tssr160778 X 38180597 to 38180613 16 + TSS region transcription start site region 160778
Zfp36l1-ps X 38180728 to 38181626 898 + pseudogene zinc finger protein 36, C3H type-like 1, pseudogene
Cpgi22677 X 38181030 to 38181307 277 CpG island CpG island 22677
Cpgi22678 X 38189506 to 38190430 924 CpG island CpG island 22678
Tssr160779 X 38189732 to 38189750 18 + TSS region transcription start site region 160779
Tssr160780 X 38189780 to 38189826 46 + TSS region transcription start site region 160780
Zbtb33 X 38189793 to 38197046 7253 + protein coding gene zinc finger and BTB domain containing 33
Tssr160781 X 38189829 to 38189842 13 + TSS region transcription start site region 160781
Tssr160782 X 38189850 to 38189865 15 + TSS region transcription start site region 160782
Tmem255a X 38196573 to 38252439 55866 - protein coding gene transmembrane protein 255A
Mir3110 X 38210441 to 38210520 79 + miRNA gene microRNA 3110
Tssr163180 X 38224618 to 38224621 3 - TSS region transcription start site region 163180
Gm39507 X 38226965 to 38233654 6689 + lncRNA gene predicted gene, 39507
Tssr163181 X 38252398 to 38252436 38 - TSS region transcription start site region 163181
Cpgi22679 X 38252406 to 38252564 158 CpG island CpG island 22679
Tssr163182 X 38252447 to 38252465 18 - TSS region transcription start site region 163182
Tssr163183 X 38252529 to 38252541 12 - TSS region transcription start site region 163183
Gm17901 X 38285588 to 38286114 526 - pseudogene predicted gene, 17901
Rhox7-ps1 X 38296868 to 38306028 9160 + pseudogene reproductive homeobox 7, pseudogene 1
Tssr160783 X 38316148 to 38316165 17 + TSS region transcription start site region 160783
Tssr160784 X 38316177 to 38316193 16 + TSS region transcription start site region 160784
Atp1b4 X 38316184 to 38336769 20585 + protein coding gene ATPase, (Na+)/K+ transporting, beta 4 polypeptide
Tssr160785 X 38320477 to 38320479 2 + TSS region transcription start site region 160785
Tssr160786 X 38329032 to 38329034 2 + TSS region transcription start site region 160786
Gm40 X 38375287 to 38375895 608 + pseudogene predicted pseudogene 40
Tssr160787 X 38396886 to 38396888 2 + TSS region transcription start site region 160787
Gm4853 X 38396935 to 38397328 393 + pseudogene predicted pseudogene 4853
Lamp2 X 38401357 to 38456454 55097 - protein coding gene lysosomal-associated membrane protein 2
Tssr163184 X 38405490 to 38405527 37 - TSS region transcription start site region 163184
Tssr163185 X 38406659 to 38406679 20 - TSS region transcription start site region 163185
Tssr163186 X 38406705 to 38406727 22 - TSS region transcription start site region 163186
Tssr163187 X 38406732 to 38406767 35 - TSS region transcription start site region 163187
Tssr163188 X 38406799 to 38406812 13 - TSS region transcription start site region 163188
Tssr163189 X 38406841 to 38406862 21 - TSS region transcription start site region 163189
Tssr163190 X 38407534 to 38407604 70 - TSS region transcription start site region 163190
Tssr163191 X 38420389 to 38420403 14 - TSS region transcription start site region 163191
Tssr163192 X 38420892 to 38420911 19 - TSS region transcription start site region 163192
Tssr163193 X 38420990 to 38421003 13 - TSS region transcription start site region 163193
Tssr163194 X 38424297 to 38424308 11 - TSS region transcription start site region 163194
Tssr163195 X 38424341 to 38424360 19 - TSS region transcription start site region 163195
Tssr163196 X 38431017 to 38431049 32 - TSS region transcription start site region 163196
Tssr163197 X 38431978 to 38432058 80 - TSS region transcription start site region 163197
Tssr163198 X 38435164 to 38435179 15 - TSS region transcription start site region 163198
Tssr163199 X 38435427 to 38435450 23 - TSS region transcription start site region 163199
Tssr163200 X 38435471 to 38435486 15 - TSS region transcription start site region 163200
Tssr163201 X 38435542 to 38435560 18 - TSS region transcription start site region 163201
Tssr163202 X 38440168 to 38440200 32 - TSS region transcription start site region 163202
Tssr163203 X 38440217 to 38440237 20 - TSS region transcription start site region 163203
Tssr163204 X 38440272 to 38440301 29 - TSS region transcription start site region 163204
Tssr163205 X 38440307 to 38440318 11 - TSS region transcription start site region 163205
Tssr163206 X 38442052 to 38442073 21 - TSS region transcription start site region 163206
Tssr163207 X 38442082 to 38442110 28 - TSS region transcription start site region 163207
Tssr163208 X 38442122 to 38442143 21 - TSS region transcription start site region 163208
Tssr163209 X 38454808 to 38454810 2 - TSS region transcription start site region 163209
Cpgi22680 X 38456243 to 38456472 229 CpG island CpG island 22680
Tssr163210 X 38456407 to 38456458 51 - TSS region transcription start site region 163210
Gm7598 X 38479543 to 38480835 1292 + lincRNA gene predicted gene 7598
Gm9488 X 38502123 to 38506164 4041 + pseudogene predicted gene 9488
Cul4b X 38533274 to 38576196 42922 - protein coding gene cullin 4B