Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:37231370-38124547

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rhox2a X 37244992 to 37249690 4698 + protein coding gene reproductive homeobox 2A
Rhox3a X 37249919 to 37258978 9059 + protein coding gene reproductive homeobox 3A
Rhox4a X 37265338 to 37270132 4794 + protein coding gene reproductive homeobox 4A
Rhox3a2 X 37380383 to 37384431 4048 + protein coding gene reproductive homeobox 3A2
Rhox4a2 X 37390860 to 37395621 4761 + protein coding gene reproductive homeobox 4A2
Rhox2b X 37412067 to 37416806 4739 + protein coding gene reproductive homeobox 2B
Rhox3b-ps X 37417012 to 37425963 8951 + pseudogene reproductive homeobox 3B, pseudogene
Rhox4b X 37432494 to 37437278 4784 + protein coding gene reproductive homeobox 4B
Rhox2c X 37453480 to 37458417 4937 + protein coding gene reproductive homeobox 2C
Rhox3c X 37469868 to 37473961 4093 + protein coding gene reproductive homeobox 3C
Rhox4c X 37480337 to 37485124 4787 + protein coding gene reproductive homeobox 4C
Rhox2d X 37493428 to 37497623 4195 + protein coding gene reproductive homeobox 2D
Gm26494 X 37499317 to 37499459 142 + snoRNA gene predicted gene, 26494
Rhox3d-ps X 37503844 to 37507806 3962 + pseudogene reproductive homeobox 3D, pseudogene
Rhox4d X 37514385 to 37519176 4791 + protein coding gene reproductive homeobox 4D
Rhox2e X 37530452 to 37541813 11361 + protein coding gene reproductive homeobox 2E
Rhox3e X 37546975 to 37550897 3922 + protein coding gene reproductive homeobox 3E
Rhox4e X 37557412 to 37562283 4871 + protein coding gene reproductive homeobox 4E
Gm38640 X 37567741 to 37581396 13655 - lncRNA gene predicted gene, 38640
Rhox2f X 37571421 to 37576159 4738 + protein coding gene reproductive homeobox 2F
Rhox3f X 37581352 to 37585496 4144 + protein coding gene reproductive homeobox 3F
Rhox4f X 37602895 to 37607686 4791 - protein coding gene reproductive homeobox 4F
Rhox3g X 37623431 to 37628139 4708 - protein coding gene reproductive homeobox 3G
Dppa3-ps X 37625647 to 37626097 450 - pseudogene developmental pluripotency-associated 3, pseudogene
Gm24493 X 37632205 to 37632347 142 - snoRNA gene predicted gene, 24493
Rhox2g X 37639115 to 37643470 4355 - protein coding gene reproductive homeobox 2G
Rhox4g X 37646501 to 37651327 4826 - protein coding gene reproductive homeobox 4G
Rhox3h X 37657688 to 37668764 11076 - protein coding gene reproductive homeobox 3H
Gm24147 X 37667233 to 37667376 143 - snoRNA gene predicted gene, 24147
Rhox2h X 37668997 to 37673277 4280 - protein coding gene reproductive homeobox 2H
Rhox7-ps2 X 37676370 to 37679547 3177 - pseudogene reproductive homeobox 7, pseudogene 2
Rhox2-ps X 37682921 to 37683431 510 - pseudogene reproductive homeobox 2, pseudogene
Tssr5611 X 37753936 to 37753937 1 + TSS region transcription start site region 5611
Tssr5612 X 37754591 to 37754633 42 + TSS region transcription start site region 5612
Tssr5613 X 37804760 to 37804778 18 + TSS region transcription start site region 5613
Rhox5 X 37804842 to 37808876 4034 + protein coding gene reproductive homeobox 5
Tssr5614 X 37805217 to 37805232 15 - TSS region transcription start site region 5614
Gm34522 X 37816375 to 37817607 1232 - lncRNA gene predicted gene, 34522
Tssr160770 X 37826955 to 37826962 7 + TSS region transcription start site region 160770
Tssr160771 X 37827007 to 37827010 3 + TSS region transcription start site region 160771
Tssr160772 X 37827013 to 37827019 6 + TSS region transcription start site region 160772
Tssr160773 X 37827044 to 37827047 3 + TSS region transcription start site region 160773
Rhox6 X 37827055 to 37829857 2802 + protein coding gene reproductive homeobox 6
Tssr160774 X 37827361 to 37827425 64 + TSS region transcription start site region 160774
Rhox7a X 37831686 to 37841171 9485 + protein coding gene reproductive homeobox 7A
Rhox8 X 37874778 to 37878944 4166 - protein coding gene reproductive homeobox 8
Tssr163165 X 37878486 to 37878498 12 - TSS region transcription start site region 163165
Tssr163166 X 37878507 to 37878512 5 - TSS region transcription start site region 163166
Tssr163167 X 37878521 to 37878533 12 - TSS region transcription start site region 163167
Tssr163168 X 37878562 to 37878565 3 - TSS region transcription start site region 163168
Tssr163169 X 37878586 to 37878602 16 - TSS region transcription start site region 163169
Tssr163170 X 37878815 to 37878820 5 - TSS region transcription start site region 163170
Tssr163171 X 37878827 to 37878848 21 - TSS region transcription start site region 163171
Tssr163172 X 37879033 to 37879037 4 - TSS region transcription start site region 163172
Rhox7b X 37886547 to 37897232 10685 - protein coding gene reproductive homeobox 7B
Rhox9 X 37899097 to 37901770 2673 - protein coding gene reproductive homeobox 9
Tssr163173 X 37901350 to 37901365 15 - TSS region transcription start site region 163173
Tssr163174 X 37901367 to 37901379 12 - TSS region transcription start site region 163174
Tssr163175 X 37901383 to 37901410 27 - TSS region transcription start site region 163175
Rhox11-ps1 X 37932474 to 37933483 1009 - pseudogene reproductive homeobox 11, pseudogene 1
Rhox11-ps2 X 37940816 to 37945602 4786 - pseudogene reproductive homeobox 11, pseudogene 2
Tssr163176 X 37945654 to 37945675 21 - TSS region transcription start site region 163176
Btg1-ps1 X 38013173 to 38018815 5642 - pseudogene B cell translocation gene 1, anti-proliferative, pseudogene 1
Btg1-ps2 X 38038199 to 38043114 4915 - pseudogene B cell translocation gene 1, anti-proliferative, pseudogene 2
Tssr163177 X 38043105 to 38043137 32 - TSS region transcription start site region 163177
Rhox10 X 38066475 to 38071688 5213 + protein coding gene reproductive homeobox 10
Tssr160775 X 38066538 to 38066547 9 + TSS region transcription start site region 160775
Tssr163178 X 38067309 to 38067349 40 - TSS region transcription start site region 163178
Rhox11 X 38076598 to 38085139 8541 - protein coding gene reproductive homeobox 11
Rhox11-ps3 X 38089842 to 38090074 232 + pseudogene reproductive homeobox 11, pseudogene 3
Rhox12 X 38104077 to 38110907 6830 - protein coding gene reproductive homeobox 12
Tssr163179 X 38110913 to 38110920 7 - TSS region transcription start site region 163179
Cpgi22676 X 38121086 to 38121901 815 CpG island CpG island 22676
Tssr160776 X 38121174 to 38121189 15 + TSS region transcription start site region 160776
Rhox13 X 38121219 to 38129967 8748 + protein coding gene reproductive homeobox 13
Gm39506 X 38121869 to 38158422 36553 - lncRNA gene predicted gene, 39506