Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:37081045-37341054

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43 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rpl39 X 37082518 to 37085222 2704 - protein coding gene ribosomal protein L39
Snora69 X 37082912 to 37083033 121 - snoRNA gene small nucleolar RNA, H/ACA box 69
Cpgi22672 X 37085003 to 37085277 274 CpG island CpG island 22672
Tssr163150 X 37085137 to 37085154 17 - TSS region transcription start site region 163150
Tssr163151 X 37085184 to 37085226 42 - TSS region transcription start site region 163151
Tssr163152 X 37085240 to 37085246 6 - TSS region transcription start site region 163152
Upf3b X 37091678 to 37110322 18644 - protein coding gene UPF3 regulator of nonsense transcripts homolog B (yeast)
Tssr163153 X 37100125 to 37100129 4 - TSS region transcription start site region 163153
Tssr163154 X 37102101 to 37102117 16 - TSS region transcription start site region 163154
Tssr163155 X 37104523 to 37104528 5 - TSS region transcription start site region 163155
Cpgi22673 X 37109950 to 37110382 432 CpG island CpG island 22673
Tssr163156 X 37110257 to 37110346 89 - TSS region transcription start site region 163156
Tssr160760 X 37126763 to 37126774 11 + TSS region transcription start site region 160760
Tssr160761 X 37126777 to 37126795 18 + TSS region transcription start site region 160761
Nkap X 37126795 to 37150746 23951 + protein coding gene NFKB activating protein
Tssr160762 X 37126803 to 37126836 33 + TSS region transcription start site region 160762
Cpgi22674 X 37126941 to 37127456 515 CpG island CpG island 22674
Tssr160763 X 37130999 to 37131033 34 + TSS region transcription start site region 160763
Tssr160764 X 37143964 to 37143981 17 + TSS region transcription start site region 160764
Akap14 X 37150698 to 37168842 18144 - protein coding gene A kinase (PRKA) anchor protein 14
Gm39503 X 37154190 to 37172730 18540 + lncRNA gene predicted gene, 39503
Tssr163157 X 37168829 to 37168854 25 - TSS region transcription start site region 163157
Tssr160765 X 37172441 to 37172449 8 + TSS region transcription start site region 160765
Gm33339 X 37172741 to 37178138 5397 + lncRNA gene predicted gene, 33339
Tssr160766 X 37178179 to 37178181 2 + TSS region transcription start site region 160766
Tssr160767 X 37179598 to 37179607 9 + TSS region transcription start site region 160767
Ndufa1 X 37187588 to 37191163 3575 - protein coding gene NADH:ubiquinone oxidoreductase subunit A1
Tssr160768 X 37190440 to 37190444 4 + TSS region transcription start site region 160768
Cpgi22675 X 37190916 to 37192102 1186 CpG island CpG island 22675
Tssr163158 X 37191104 to 37191148 44 - TSS region transcription start site region 163158
Tssr163159 X 37191160 to 37191196 36 - TSS region transcription start site region 163159
Tssr160769 X 37191220 to 37191320 100 + TSS region transcription start site region 160769
Rnf113a1 X 37191245 to 37192467 1222 + protein coding gene ring finger protein 113A1
Tssr163160 X 37194799 to 37194800 1 - TSS region transcription start site region 163160
Gm9 X 37209348 to 37211041 1693 - protein coding gene predicted gene 9
Tssr163161 X 37210998 to 37211010 12 - TSS region transcription start site region 163161
Tssr163162 X 37211045 to 37211054 9 - TSS region transcription start site region 163162
Rhox1 X 37213804 to 37222258 8454 - protein coding gene reproductive homeobox 1
Tssr163163 X 37218269 to 37218281 12 - TSS region transcription start site region 163163
Tssr163164 X 37218330 to 37218337 7 - TSS region transcription start site region 163164
Rhox2a X 37244992 to 37249690 4698 + protein coding gene reproductive homeobox 2A
Rhox3a X 37249919 to 37258978 9059 + protein coding gene reproductive homeobox 3A
Rhox4a X 37265338 to 37270132 4794 + protein coding gene reproductive homeobox 4A