Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:37069868-37873961

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm24809 X 37071992 to 37072262 270 - unclassified non-coding RNA gene predicted gene, 24809
Rpl39 X 37082518 to 37085222 2704 - protein coding gene ribosomal protein L39
Snora69 X 37082912 to 37083033 121 - snoRNA gene small nucleolar RNA, H/ACA box 69
Cpgi22672 X 37085003 to 37085277 274 CpG island CpG island 22672
Tssr163150 X 37085137 to 37085154 17 - TSS region transcription start site region 163150
Tssr163151 X 37085184 to 37085226 42 - TSS region transcription start site region 163151
Tssr163152 X 37085240 to 37085246 6 - TSS region transcription start site region 163152
Upf3b X 37091678 to 37110322 18644 - protein coding gene UPF3 regulator of nonsense transcripts homolog B (yeast)
Tssr163153 X 37100125 to 37100129 4 - TSS region transcription start site region 163153
Tssr163154 X 37102101 to 37102117 16 - TSS region transcription start site region 163154
Tssr163155 X 37104523 to 37104528 5 - TSS region transcription start site region 163155
Cpgi22673 X 37109950 to 37110382 432 CpG island CpG island 22673
Tssr163156 X 37110257 to 37110346 89 - TSS region transcription start site region 163156
Tssr160760 X 37126763 to 37126774 11 + TSS region transcription start site region 160760
Tssr160761 X 37126777 to 37126795 18 + TSS region transcription start site region 160761
Nkap X 37126795 to 37150746 23951 + protein coding gene NFKB activating protein
Tssr160762 X 37126803 to 37126836 33 + TSS region transcription start site region 160762
Cpgi22674 X 37126941 to 37127456 515 CpG island CpG island 22674
Tssr160763 X 37130999 to 37131033 34 + TSS region transcription start site region 160763
Tssr160764 X 37143964 to 37143981 17 + TSS region transcription start site region 160764
Akap14 X 37150698 to 37168842 18144 - protein coding gene A kinase (PRKA) anchor protein 14
Gm39503 X 37154190 to 37172730 18540 + lncRNA gene predicted gene, 39503
Tssr163157 X 37168829 to 37168854 25 - TSS region transcription start site region 163157
Tssr160765 X 37172441 to 37172449 8 + TSS region transcription start site region 160765
Gm33339 X 37172741 to 37178138 5397 + lncRNA gene predicted gene, 33339
Tssr160766 X 37178179 to 37178181 2 + TSS region transcription start site region 160766
Tssr160767 X 37179598 to 37179607 9 + TSS region transcription start site region 160767
Ndufa1 X 37187588 to 37191163 3575 - protein coding gene NADH:ubiquinone oxidoreductase subunit A1
Tssr160768 X 37190440 to 37190444 4 + TSS region transcription start site region 160768
Cpgi22675 X 37190916 to 37192102 1186 CpG island CpG island 22675
Tssr163158 X 37191104 to 37191148 44 - TSS region transcription start site region 163158
Tssr163159 X 37191160 to 37191196 36 - TSS region transcription start site region 163159
Tssr160769 X 37191220 to 37191320 100 + TSS region transcription start site region 160769
Rnf113a1 X 37191245 to 37192467 1222 + protein coding gene ring finger protein 113A1
Tssr163160 X 37194799 to 37194800 1 - TSS region transcription start site region 163160
Gm9 X 37209348 to 37211041 1693 - protein coding gene predicted gene 9
Tssr163161 X 37210998 to 37211010 12 - TSS region transcription start site region 163161
Tssr163162 X 37211045 to 37211054 9 - TSS region transcription start site region 163162
Rhox1 X 37213804 to 37222258 8454 - protein coding gene reproductive homeobox 1
Tssr163163 X 37218269 to 37218281 12 - TSS region transcription start site region 163163
Tssr163164 X 37218330 to 37218337 7 - TSS region transcription start site region 163164
Rhox2a X 37244992 to 37249690 4698 + protein coding gene reproductive homeobox 2A
Rhox3a X 37249919 to 37258978 9059 + protein coding gene reproductive homeobox 3A
Rhox4a X 37265338 to 37270132 4794 + protein coding gene reproductive homeobox 4A
Rhox3a2 X 37380383 to 37384431 4048 + protein coding gene reproductive homeobox 3A2
Rhox4a2 X 37390860 to 37395621 4761 + protein coding gene reproductive homeobox 4A2
Rhox2b X 37412067 to 37416806 4739 + protein coding gene reproductive homeobox 2B
Rhox3b-ps X 37417012 to 37425963 8951 + pseudogene reproductive homeobox 3B, pseudogene
Rhox4b X 37432494 to 37437278 4784 + protein coding gene reproductive homeobox 4B
Rhox2c X 37453480 to 37458417 4937 + protein coding gene reproductive homeobox 2C
Rhox3c X 37469868 to 37473961 4093 + protein coding gene reproductive homeobox 3C
Rhox4c X 37480337 to 37485124 4787 + protein coding gene reproductive homeobox 4C
Rhox2d X 37493428 to 37497623 4195 + protein coding gene reproductive homeobox 2D
Gm26494 X 37499317 to 37499459 142 + snoRNA gene predicted gene, 26494
Rhox3d-ps X 37503844 to 37507806 3962 + pseudogene reproductive homeobox 3D, pseudogene
Rhox4d X 37514385 to 37519176 4791 + protein coding gene reproductive homeobox 4D
Rhox2e X 37530452 to 37541813 11361 + protein coding gene reproductive homeobox 2E
Rhox3e X 37546975 to 37550897 3922 + protein coding gene reproductive homeobox 3E
Rhox4e X 37557412 to 37562283 4871 + protein coding gene reproductive homeobox 4E
Gm38640 X 37567741 to 37581396 13655 - lncRNA gene predicted gene, 38640
Rhox2f X 37571421 to 37576159 4738 + protein coding gene reproductive homeobox 2F
Rhox3f X 37581352 to 37585496 4144 + protein coding gene reproductive homeobox 3F
Rhox4f X 37602895 to 37607686 4791 - protein coding gene reproductive homeobox 4F
Rhox3g X 37623431 to 37628139 4708 - protein coding gene reproductive homeobox 3G
Dppa3-ps X 37625647 to 37626097 450 - pseudogene developmental pluripotency-associated 3, pseudogene
Gm24493 X 37632205 to 37632347 142 - snoRNA gene predicted gene, 24493
Rhox2g X 37639115 to 37643470 4355 - protein coding gene reproductive homeobox 2G
Rhox4g X 37646501 to 37651327 4826 - protein coding gene reproductive homeobox 4G
Rhox3h X 37657688 to 37668764 11076 - protein coding gene reproductive homeobox 3H
Gm24147 X 37667233 to 37667376 143 - snoRNA gene predicted gene, 24147
Rhox2h X 37668997 to 37673277 4280 - protein coding gene reproductive homeobox 2H
Rhox7-ps2 X 37676370 to 37679547 3177 - pseudogene reproductive homeobox 7, pseudogene 2
Rhox2-ps X 37682921 to 37683431 510 - pseudogene reproductive homeobox 2, pseudogene
Tssr5611 X 37753936 to 37753937 1 + TSS region transcription start site region 5611
Tssr5612 X 37754591 to 37754633 42 + TSS region transcription start site region 5612
Tssr5613 X 37804760 to 37804778 18 + TSS region transcription start site region 5613
Rhox5 X 37804842 to 37808876 4034 + protein coding gene reproductive homeobox 5
Tssr5614 X 37805217 to 37805232 15 - TSS region transcription start site region 5614
Gm34522 X 37816375 to 37817607 1232 - lncRNA gene predicted gene, 34522
Tssr160770 X 37826955 to 37826962 7 + TSS region transcription start site region 160770
Tssr160771 X 37827007 to 37827010 3 + TSS region transcription start site region 160771
Tssr160772 X 37827013 to 37827019 6 + TSS region transcription start site region 160772
Tssr160773 X 37827044 to 37827047 3 + TSS region transcription start site region 160773
Rhox6 X 37827055 to 37829857 2802 + protein coding gene reproductive homeobox 6
Tssr160774 X 37827361 to 37827425 64 + TSS region transcription start site region 160774
Rhox7a X 37831686 to 37841171 9485 + protein coding gene reproductive homeobox 7A