Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:36814683-37164704

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mdrl X 36814771 to 36817185 2414 - lincRNA gene mitochondrial dynamic related lncRNA
Gm14549 X 36814771 to 36817200 2429 + antisense lncRNA gene predicted gene 14549
C330007P06Rik X 36827551 to 36864303 36752 - protein coding gene RIKEN cDNA C330007P06 gene
Gm14541 X 36839137 to 36839293 156 - pseudogene predicted gene 14541
Tssr163133 X 36839341 to 36839355 14 - TSS region transcription start site region 163133
Cpgi22667 X 36863975 to 36864331 356 CpG island CpG island 22667
Tssr5609 X 36872430 to 36872432 2 + TSS region transcription start site region 5609
Cpgi22668 X 36874144 to 36875135 991 CpG island CpG island 22668
Ube2a X 36874295 to 36884222 9927 + protein coding gene ubiquitin-conjugating enzyme E2A
Tssr160753 X 36874325 to 36874336 11 + TSS region transcription start site region 160753
Tssr160754 X 36874351 to 36874368 17 + TSS region transcription start site region 160754
Tssr160755 X 36877584 to 36877585 1 + TSS region transcription start site region 160755
Tssr160756 X 36883125 to 36883136 11 + TSS region transcription start site region 160756
Nkrf X 36887540 to 36902899 15359 - protein coding gene NF-kappaB repressing factor
Tssr5610 X 36894101 to 36894105 4 + TSS region transcription start site region 5610
Cpgi22669 X 36902426 to 36903573 1147 CpG island CpG island 22669
Tssr163134 X 36902826 to 36902833 7 - TSS region transcription start site region 163134
Tssr163135 X 36902847 to 36902871 24 - TSS region transcription start site region 163135
Tssr163136 X 36902877 to 36902904 27 - TSS region transcription start site region 163136
Tssr163137 X 36903344 to 36903353 9 - TSS region transcription start site region 163137
Tssr163138 X 36903454 to 36903482 28 - TSS region transcription start site region 163138
Tssr163139 X 36903495 to 36903506 11 - TSS region transcription start site region 163139
Gm15008 X 36910834 to 36911985 1151 + antisense lncRNA gene predicted gene 15008
Sept6 X 36911272 to 36990050 78778 - protein coding gene septin 6
Tssr163140 X 36979670 to 36979671 1 - TSS region transcription start site region 163140
Tssr160757 X 36981104 to 36981113 9 + TSS region transcription start site region 160757
Tssr160758 X 36983922 to 36983929 7 + TSS region transcription start site region 160758
Cpgi22670 X 36989370 to 36989767 397 CpG island CpG island 22670
Tssr163141 X 36989458 to 36989479 21 - TSS region transcription start site region 163141
Tssr163142 X 36989482 to 36989507 25 - TSS region transcription start site region 163142
Tssr163143 X 36989523 to 36989537 14 - TSS region transcription start site region 163143
Tssr163144 X 36989657 to 36989674 17 - TSS region transcription start site region 163144
Tssr163145 X 36989683 to 36989704 21 - TSS region transcription start site region 163145
Tssr163146 X 36991724 to 36991727 3 - TSS region transcription start site region 163146
Gm14542 X 37035254 to 37037325 2071 - pseudogene predicted gene 14542
Cpgi22671 X 37048395 to 37049890 1495 CpG island CpG island 22671
Tssr163147 X 37048649 to 37048659 10 - TSS region transcription start site region 163147
Tssr163148 X 37048660 to 37048671 11 - TSS region transcription start site region 163148
Tssr163149 X 37048692 to 37048703 11 - TSS region transcription start site region 163149
Tssr160759 X 37048807 to 37048814 7 + TSS region transcription start site region 160759
Sowahd X 37048845 to 37050418 1573 + protein coding gene sosondowah ankyrin repeat domain family member D
Gm26099 X 37060246 to 37060354 108 - snRNA gene predicted gene, 26099
Gm24809 X 37071992 to 37072262 270 - unclassified non-coding RNA gene predicted gene, 24809
Rpl39 X 37082518 to 37085222 2704 - protein coding gene ribosomal protein L39
Snora69 X 37082912 to 37083033 121 - snoRNA gene small nucleolar RNA, H/ACA box 69
Cpgi22672 X 37085003 to 37085277 274 CpG island CpG island 22672
Tssr163150 X 37085137 to 37085154 17 - TSS region transcription start site region 163150
Tssr163151 X 37085184 to 37085226 42 - TSS region transcription start site region 163151
Tssr163152 X 37085240 to 37085246 6 - TSS region transcription start site region 163152
Upf3b X 37091678 to 37110322 18644 - protein coding gene UPF3 regulator of nonsense transcripts homolog B (yeast)
Tssr163153 X 37100125 to 37100129 4 - TSS region transcription start site region 163153
Tssr163154 X 37102101 to 37102117 16 - TSS region transcription start site region 163154
Tssr163155 X 37104523 to 37104528 5 - TSS region transcription start site region 163155
Cpgi22673 X 37109950 to 37110382 432 CpG island CpG island 22673
Tssr163156 X 37110257 to 37110346 89 - TSS region transcription start site region 163156
Tssr160760 X 37126763 to 37126774 11 + TSS region transcription start site region 160760
Tssr160761 X 37126777 to 37126795 18 + TSS region transcription start site region 160761
Nkap X 37126795 to 37150746 23951 + protein coding gene NFKB activating protein
Tssr160762 X 37126803 to 37126836 33 + TSS region transcription start site region 160762
Cpgi22674 X 37126941 to 37127456 515 CpG island CpG island 22674
Tssr160763 X 37130999 to 37131033 34 + TSS region transcription start site region 160763
Tssr160764 X 37143964 to 37143981 17 + TSS region transcription start site region 160764
Akap14 X 37150698 to 37168842 18144 - protein coding gene A kinase (PRKA) anchor protein 14
Gm39503 X 37154190 to 37172730 18540 + lncRNA gene predicted gene, 39503