Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:36161117-36601253

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31 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Il13ra1 X 36112110 to 36171259 59149 + protein coding gene interleukin 13 receptor, alpha 1
Gm42406 X 36137892 to 36196095 58203 - lncRNA gene predicted gene, 42406
Zcchc12 X 36195904 to 36199158 3254 + protein coding gene zinc finger, CCHC domain containing 12
Tssr160735 X 36195928 to 36195932 4 + TSS region transcription start site region 160735
Tssr160736 X 36195938 to 36195945 7 + TSS region transcription start site region 160736
Tssr160737 X 36195950 to 36195959 9 + TSS region transcription start site region 160737
Tssr160738 X 36195968 to 36195993 25 + TSS region transcription start site region 160738
DXMit81 X 36201307 to 36201506 199 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 81
Gm14560 X 36212660 to 36213034 374 - pseudogene predicted gene 14560
Gm6023 X 36213524 to 36214129 605 - pseudogene predicted gene 6023
Gm14559 X 36302113 to 36302608 495 - pseudogene predicted gene 14559
Lonrf3 X 36328353 to 36362341 33988 + protein coding gene LON peptidase N-terminal domain and ring finger 3
Cpgi22660 X 36328359 to 36329703 1344 CpG island CpG island 22660
Tssr160739 X 36328399 to 36328418 19 + TSS region transcription start site region 160739
Tssr160740 X 36328420 to 36328441 21 + TSS region transcription start site region 160740
Cpgi22661 X 36329819 to 36330457 638 CpG island CpG island 22661
Tssr160741 X 36336701 to 36336714 13 + TSS region transcription start site region 160741
Tssr160742 X 36346204 to 36346210 6 + TSS region transcription start site region 160742
Tssr160743 X 36350959 to 36350961 2 + TSS region transcription start site region 160743
Gm25047 X 36363899 to 36364002 103 + snRNA gene predicted gene, 25047
Gm14568 X 36376807 to 36377100 293 + pseudogene predicted gene 14568
Gm44485 X 36381117 to 36381253 136 - miRNA gene predicted gene, 44485
Gm33383 X 36401263 to 36403446 2183 + protein coding gene predicted gene, 33383
Gm6268 X 36403477 to 36404654 1177 + protein coding gene predicted gene 6268
Gm22364 X 36409610 to 36409707 97 - snRNA gene predicted gene, 22364
Gm14569 X 36423601 to 36491830 68229 - protein coding gene predicted gene 14569
Tssr163128 X 36457126 to 36457130 4 - TSS region transcription start site region 163128
Tssr163129 X 36492620 to 36492637 17 - TSS region transcription start site region 163129
Cpgi22662 X 36597871 to 36598781 910 CpG island CpG island 22662
Tssr160744 X 36598199 to 36598214 15 + TSS region transcription start site region 160744
Pgrmc1 X 36598206 to 36606079 7873 + protein coding gene progesterone receptor membrane component 1