Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:36144819-37064873

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Il13ra1 X 36112110 to 36171259 59149 + protein coding gene interleukin 13 receptor, alpha 1
Gm42406 X 36137892 to 36196095 58203 - lncRNA gene predicted gene, 42406
Tssr5607 X 36152051 to 36152089 38 + TSS region transcription start site region 5607
Zcchc12 X 36195904 to 36199158 3254 + protein coding gene zinc finger, CCHC domain containing 12
Tssr160735 X 36195928 to 36195932 4 + TSS region transcription start site region 160735
Tssr160736 X 36195938 to 36195945 7 + TSS region transcription start site region 160736
Tssr160737 X 36195950 to 36195959 9 + TSS region transcription start site region 160737
Tssr160738 X 36195968 to 36195993 25 + TSS region transcription start site region 160738
DXMit81 X 36201307 to 36201506 199 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 81
Gm14560 X 36212660 to 36213034 374 - pseudogene predicted gene 14560
Gm6023 X 36213524 to 36214129 605 - pseudogene predicted gene 6023
Gm14559 X 36302113 to 36302608 495 - pseudogene predicted gene 14559
Lonrf3 X 36328353 to 36362341 33988 + protein coding gene LON peptidase N-terminal domain and ring finger 3
Cpgi22660 X 36328359 to 36329703 1344 CpG island CpG island 22660
Tssr160739 X 36328399 to 36328418 19 + TSS region transcription start site region 160739
Tssr160740 X 36328420 to 36328441 21 + TSS region transcription start site region 160740
Cpgi22661 X 36329819 to 36330457 638 CpG island CpG island 22661
Tssr160741 X 36336701 to 36336714 13 + TSS region transcription start site region 160741
Tssr160742 X 36346204 to 36346210 6 + TSS region transcription start site region 160742
Tssr160743 X 36350959 to 36350961 2 + TSS region transcription start site region 160743
Gm25047 X 36363899 to 36364002 103 + snRNA gene predicted gene, 25047
Gm14568 X 36376807 to 36377100 293 + pseudogene predicted gene 14568
Gm44485 X 36381117 to 36381253 136 - miRNA gene predicted gene, 44485
Gm33383 X 36401263 to 36403446 2183 + protein coding gene predicted gene, 33383
Gm6268 X 36403477 to 36404654 1177 + protein coding gene predicted gene 6268
Gm22364 X 36409610 to 36409707 97 - snRNA gene predicted gene, 22364
Gm14569 X 36423601 to 36491830 68229 - protein coding gene predicted gene 14569
Tssr163128 X 36457126 to 36457130 4 - TSS region transcription start site region 163128
Tssr163129 X 36492620 to 36492637 17 - TSS region transcription start site region 163129
Cpgi22662 X 36597871 to 36598781 910 CpG island CpG island 22662
Tssr160744 X 36598199 to 36598214 15 + TSS region transcription start site region 160744
Pgrmc1 X 36598206 to 36606079 7873 + protein coding gene progesterone receptor membrane component 1
Tssr160745 X 36602158 to 36602170 12 + TSS region transcription start site region 160745
Tssr160746 X 36604819 to 36604873 54 + TSS region transcription start site region 160746
Akap17b X 36608314 to 36645395 37081 - protein coding gene A kinase (PRKA) anchor protein 17B
Cpgi22663 X 36644777 to 36645494 717 CpG island CpG island 22663
Tssr163130 X 36645359 to 36645414 55 - TSS region transcription start site region 163130
Gm6274 X 36668217 to 36669013 796 + pseudogene predicted gene 6274
Tssr163131 X 36692530 to 36692563 33 - TSS region transcription start site region 163131
Slc25a43 X 36743659 to 36777202 33543 + protein coding gene solute carrier family 25, member 43
Tssr160747 X 36743660 to 36743700 40 + TSS region transcription start site region 160747
Cpgi22664 X 36743669 to 36743824 155 CpG island CpG island 22664
Tssr160748 X 36743702 to 36743721 19 + TSS region transcription start site region 160748
Gm23613 X 36776619 to 36776705 86 + snoRNA gene predicted gene, 23613
Tssr160749 X 36792963 to 36792969 6 + TSS region transcription start site region 160749
Tssr160750 X 36795594 to 36795610 16 + TSS region transcription start site region 160750
Cpgi22665 X 36795617 to 36796776 1159 CpG island CpG island 22665
Tssr160751 X 36795621 to 36795640 19 + TSS region transcription start site region 160751
Tssr160752 X 36795642 to 36795653 11 + TSS region transcription start site region 160752
Fnld X 36795651 to 48683972 11888321 heritable phenotypic marker faint-lined
Slc25a5 X 36795651 to 36798807 3156 + protein coding gene solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5
Tssr5608 X 36795720 to 36795728 8 + TSS region transcription start site region 5608
Tssr163132 X 36807787 to 36807838 51 - TSS region transcription start site region 163132
Cpgi22666 X 36807796 to 36808199 403 CpG island CpG island 22666
Mdrl X 36814771 to 36817185 2414 - lincRNA gene mitochondrial dynamic related lncRNA
Gm14549 X 36814771 to 36817200 2429 + antisense lncRNA gene predicted gene 14549
C330007P06Rik X 36827551 to 36864303 36752 - protein coding gene RIKEN cDNA C330007P06 gene
Gm14541 X 36839137 to 36839293 156 - pseudogene predicted gene 14541
Tssr163133 X 36839341 to 36839355 14 - TSS region transcription start site region 163133
Cpgi22667 X 36863975 to 36864331 356 CpG island CpG island 22667
Tssr5609 X 36872430 to 36872432 2 + TSS region transcription start site region 5609
Cpgi22668 X 36874144 to 36875135 991 CpG island CpG island 22668
Ube2a X 36874295 to 36884222 9927 + protein coding gene ubiquitin-conjugating enzyme E2A
Tssr160753 X 36874325 to 36874336 11 + TSS region transcription start site region 160753
Tssr160754 X 36874351 to 36874368 17 + TSS region transcription start site region 160754
Tssr160755 X 36877584 to 36877585 1 + TSS region transcription start site region 160755
Tssr160756 X 36883125 to 36883136 11 + TSS region transcription start site region 160756
Nkrf X 36887540 to 36902899 15359 - protein coding gene NF-kappaB repressing factor
Tssr5610 X 36894101 to 36894105 4 + TSS region transcription start site region 5610
Cpgi22669 X 36902426 to 36903573 1147 CpG island CpG island 22669
Tssr163134 X 36902826 to 36902833 7 - TSS region transcription start site region 163134
Tssr163135 X 36902847 to 36902871 24 - TSS region transcription start site region 163135
Tssr163136 X 36902877 to 36902904 27 - TSS region transcription start site region 163136
Tssr163137 X 36903344 to 36903353 9 - TSS region transcription start site region 163137
Tssr163138 X 36903454 to 36903482 28 - TSS region transcription start site region 163138
Tssr163139 X 36903495 to 36903506 11 - TSS region transcription start site region 163139
Gm15008 X 36910834 to 36911985 1151 + antisense lncRNA gene predicted gene 15008
Sept6 X 36911272 to 36990050 78778 - protein coding gene septin 6
Tssr163140 X 36979670 to 36979671 1 - TSS region transcription start site region 163140
Tssr160757 X 36981104 to 36981113 9 + TSS region transcription start site region 160757
Tssr160758 X 36983922 to 36983929 7 + TSS region transcription start site region 160758
Cpgi22670 X 36989370 to 36989767 397 CpG island CpG island 22670
Tssr163141 X 36989458 to 36989479 21 - TSS region transcription start site region 163141
Tssr163142 X 36989482 to 36989507 25 - TSS region transcription start site region 163142
Tssr163143 X 36989523 to 36989537 14 - TSS region transcription start site region 163143
Tssr163144 X 36989657 to 36989674 17 - TSS region transcription start site region 163144
Tssr163145 X 36989683 to 36989704 21 - TSS region transcription start site region 163145
Tssr163146 X 36991724 to 36991727 3 - TSS region transcription start site region 163146
Gm14542 X 37035254 to 37037325 2071 - pseudogene predicted gene 14542
Cpgi22671 X 37048395 to 37049890 1495 CpG island CpG island 22671
Tssr163147 X 37048649 to 37048659 10 - TSS region transcription start site region 163147
Tssr163148 X 37048660 to 37048671 11 - TSS region transcription start site region 163148
Tssr163149 X 37048692 to 37048703 11 - TSS region transcription start site region 163149
Tssr160759 X 37048807 to 37048814 7 + TSS region transcription start site region 160759
Sowahd X 37048845 to 37050418 1573 + protein coding gene sosondowah ankyrin repeat domain family member D
Gm26099 X 37060246 to 37060354 108 - snRNA gene predicted gene, 26099