Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:36081104-37881113

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197 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
DXMit238 X 36082126 to 36082228 102 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology-238
Tssr160731 X 36111807 to 36111836 29 + TSS region transcription start site region 160731
Cpgi22659 X 36111845 to 36112569 724 CpG island CpG island 22659
Tssr160732 X 36112072 to 36112083 11 + TSS region transcription start site region 160732
Tssr160733 X 36112097 to 36112113 16 + TSS region transcription start site region 160733
Il13ra1 X 36112110 to 36171259 59149 + protein coding gene interleukin 13 receptor, alpha 1
Tssr160734 X 36112114 to 36112172 58 + TSS region transcription start site region 160734
Gm42406 X 36137892 to 36196095 58203 - lncRNA gene predicted gene, 42406
Tssr5607 X 36152051 to 36152089 38 + TSS region transcription start site region 5607
Zcchc12 X 36195904 to 36199158 3254 + protein coding gene zinc finger, CCHC domain containing 12
Tssr160735 X 36195928 to 36195932 4 + TSS region transcription start site region 160735
Tssr160736 X 36195938 to 36195945 7 + TSS region transcription start site region 160736
Tssr160737 X 36195950 to 36195959 9 + TSS region transcription start site region 160737
Tssr160738 X 36195968 to 36195993 25 + TSS region transcription start site region 160738
DXMit81 X 36201307 to 36201506 199 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 81
Gm14560 X 36212660 to 36213034 374 - pseudogene predicted gene 14560
Gm6023 X 36213524 to 36214129 605 - pseudogene predicted gene 6023
Gm14559 X 36302113 to 36302608 495 - pseudogene predicted gene 14559
Lonrf3 X 36328353 to 36362341 33988 + protein coding gene LON peptidase N-terminal domain and ring finger 3
Cpgi22660 X 36328359 to 36329703 1344 CpG island CpG island 22660
Tssr160739 X 36328399 to 36328418 19 + TSS region transcription start site region 160739
Tssr160740 X 36328420 to 36328441 21 + TSS region transcription start site region 160740
Cpgi22661 X 36329819 to 36330457 638 CpG island CpG island 22661
Tssr160741 X 36336701 to 36336714 13 + TSS region transcription start site region 160741
Tssr160742 X 36346204 to 36346210 6 + TSS region transcription start site region 160742
Tssr160743 X 36350959 to 36350961 2 + TSS region transcription start site region 160743
Gm25047 X 36363899 to 36364002 103 + snRNA gene predicted gene, 25047
Gm14568 X 36376807 to 36377100 293 + pseudogene predicted gene 14568
Gm44485 X 36381117 to 36381253 136 - miRNA gene predicted gene, 44485
Gm33383 X 36401263 to 36403446 2183 + protein coding gene predicted gene, 33383
Gm6268 X 36403477 to 36404654 1177 + protein coding gene predicted gene 6268
Gm22364 X 36409610 to 36409707 97 - snRNA gene predicted gene, 22364
Gm14569 X 36423601 to 36491830 68229 - protein coding gene predicted gene 14569
Tssr163128 X 36457126 to 36457130 4 - TSS region transcription start site region 163128
Tssr163129 X 36492620 to 36492637 17 - TSS region transcription start site region 163129
Cpgi22662 X 36597871 to 36598781 910 CpG island CpG island 22662
Tssr160744 X 36598199 to 36598214 15 + TSS region transcription start site region 160744
Pgrmc1 X 36598206 to 36606079 7873 + protein coding gene progesterone receptor membrane component 1
Tssr160745 X 36602158 to 36602170 12 + TSS region transcription start site region 160745
Tssr160746 X 36604819 to 36604873 54 + TSS region transcription start site region 160746
Akap17b X 36608314 to 36645395 37081 - protein coding gene A kinase (PRKA) anchor protein 17B
Cpgi22663 X 36644777 to 36645494 717 CpG island CpG island 22663
Tssr163130 X 36645359 to 36645414 55 - TSS region transcription start site region 163130
Gm6274 X 36668217 to 36669013 796 + pseudogene predicted gene 6274
Tssr163131 X 36692530 to 36692563 33 - TSS region transcription start site region 163131
Slc25a43 X 36743659 to 36777202 33543 + protein coding gene solute carrier family 25, member 43
Tssr160747 X 36743660 to 36743700 40 + TSS region transcription start site region 160747
Cpgi22664 X 36743669 to 36743824 155 CpG island CpG island 22664
Tssr160748 X 36743702 to 36743721 19 + TSS region transcription start site region 160748
Gm23613 X 36776619 to 36776705 86 + snoRNA gene predicted gene, 23613
Tssr160749 X 36792963 to 36792969 6 + TSS region transcription start site region 160749
Tssr160750 X 36795594 to 36795610 16 + TSS region transcription start site region 160750
Cpgi22665 X 36795617 to 36796776 1159 CpG island CpG island 22665
Tssr160751 X 36795621 to 36795640 19 + TSS region transcription start site region 160751
Tssr160752 X 36795642 to 36795653 11 + TSS region transcription start site region 160752
Slc25a5 X 36795651 to 36798807 3156 + protein coding gene solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5
Fnld X 36795651 to 48683972 11888321 heritable phenotypic marker faint-lined
Tssr5608 X 36795720 to 36795728 8 + TSS region transcription start site region 5608
Tssr163132 X 36807787 to 36807838 51 - TSS region transcription start site region 163132
Cpgi22666 X 36807796 to 36808199 403 CpG island CpG island 22666
Gm14549 X 36814771 to 36817200 2429 + antisense lncRNA gene predicted gene 14549
Mdrl X 36814771 to 36817185 2414 - lincRNA gene mitochondrial dynamic related lncRNA
C330007P06Rik X 36827551 to 36864303 36752 - protein coding gene RIKEN cDNA C330007P06 gene
Gm14541 X 36839137 to 36839293 156 - pseudogene predicted gene 14541
Tssr163133 X 36839341 to 36839355 14 - TSS region transcription start site region 163133
Cpgi22667 X 36863975 to 36864331 356 CpG island CpG island 22667
Tssr5609 X 36872430 to 36872432 2 + TSS region transcription start site region 5609
Cpgi22668 X 36874144 to 36875135 991 CpG island CpG island 22668
Ube2a X 36874295 to 36884222 9927 + protein coding gene ubiquitin-conjugating enzyme E2A
Tssr160753 X 36874325 to 36874336 11 + TSS region transcription start site region 160753
Tssr160754 X 36874351 to 36874368 17 + TSS region transcription start site region 160754
Tssr160755 X 36877584 to 36877585 1 + TSS region transcription start site region 160755
Tssr160756 X 36883125 to 36883136 11 + TSS region transcription start site region 160756
Nkrf X 36887540 to 36902899 15359 - protein coding gene NF-kappaB repressing factor
Tssr5610 X 36894101 to 36894105 4 + TSS region transcription start site region 5610
Cpgi22669 X 36902426 to 36903573 1147 CpG island CpG island 22669
Tssr163134 X 36902826 to 36902833 7 - TSS region transcription start site region 163134
Tssr163135 X 36902847 to 36902871 24 - TSS region transcription start site region 163135
Tssr163136 X 36902877 to 36902904 27 - TSS region transcription start site region 163136
Tssr163137 X 36903344 to 36903353 9 - TSS region transcription start site region 163137
Tssr163138 X 36903454 to 36903482 28 - TSS region transcription start site region 163138
Tssr163139 X 36903495 to 36903506 11 - TSS region transcription start site region 163139
Gm15008 X 36910834 to 36911985 1151 + antisense lncRNA gene predicted gene 15008
Sept6 X 36911272 to 36990050 78778 - protein coding gene septin 6
Tssr163140 X 36979670 to 36979671 1 - TSS region transcription start site region 163140
Tssr160757 X 36981104 to 36981113 9 + TSS region transcription start site region 160757
Tssr160758 X 36983922 to 36983929 7 + TSS region transcription start site region 160758
Cpgi22670 X 36989370 to 36989767 397 CpG island CpG island 22670
Tssr163141 X 36989458 to 36989479 21 - TSS region transcription start site region 163141
Tssr163142 X 36989482 to 36989507 25 - TSS region transcription start site region 163142
Tssr163143 X 36989523 to 36989537 14 - TSS region transcription start site region 163143
Tssr163144 X 36989657 to 36989674 17 - TSS region transcription start site region 163144
Tssr163145 X 36989683 to 36989704 21 - TSS region transcription start site region 163145
Tssr163146 X 36991724 to 36991727 3 - TSS region transcription start site region 163146
Gm14542 X 37035254 to 37037325 2071 - pseudogene predicted gene 14542
Cpgi22671 X 37048395 to 37049890 1495 CpG island CpG island 22671
Tssr163147 X 37048649 to 37048659 10 - TSS region transcription start site region 163147
Tssr163148 X 37048660 to 37048671 11 - TSS region transcription start site region 163148
Tssr163149 X 37048692 to 37048703 11 - TSS region transcription start site region 163149
Tssr160759 X 37048807 to 37048814 7 + TSS region transcription start site region 160759
Sowahd X 37048845 to 37050418 1573 + protein coding gene sosondowah ankyrin repeat domain family member D
Gm26099 X 37060246 to 37060354 108 - snRNA gene predicted gene, 26099
Gm24809 X 37071992 to 37072262 270 - unclassified non-coding RNA gene predicted gene, 24809
Rpl39 X 37082518 to 37085222 2704 - protein coding gene ribosomal protein L39
Snora69 X 37082912 to 37083033 121 - snoRNA gene small nucleolar RNA, H/ACA box 69
Cpgi22672 X 37085003 to 37085277 274 CpG island CpG island 22672
Tssr163150 X 37085137 to 37085154 17 - TSS region transcription start site region 163150
Tssr163151 X 37085184 to 37085226 42 - TSS region transcription start site region 163151
Tssr163152 X 37085240 to 37085246 6 - TSS region transcription start site region 163152
Upf3b X 37091678 to 37110322 18644 - protein coding gene UPF3 regulator of nonsense transcripts homolog B (yeast)
Tssr163153 X 37100125 to 37100129 4 - TSS region transcription start site region 163153
Tssr163154 X 37102101 to 37102117 16 - TSS region transcription start site region 163154
Tssr163155 X 37104523 to 37104528 5 - TSS region transcription start site region 163155
Cpgi22673 X 37109950 to 37110382 432 CpG island CpG island 22673
Tssr163156 X 37110257 to 37110346 89 - TSS region transcription start site region 163156
Tssr160760 X 37126763 to 37126774 11 + TSS region transcription start site region 160760
Tssr160761 X 37126777 to 37126795 18 + TSS region transcription start site region 160761
Nkap X 37126795 to 37150746 23951 + protein coding gene NFKB activating protein
Tssr160762 X 37126803 to 37126836 33 + TSS region transcription start site region 160762
Cpgi22674 X 37126941 to 37127456 515 CpG island CpG island 22674
Tssr160763 X 37130999 to 37131033 34 + TSS region transcription start site region 160763
Tssr160764 X 37143964 to 37143981 17 + TSS region transcription start site region 160764
Akap14 X 37150698 to 37168842 18144 - protein coding gene A kinase (PRKA) anchor protein 14
Gm39503 X 37154190 to 37172730 18540 + lncRNA gene predicted gene, 39503
Tssr163157 X 37168829 to 37168854 25 - TSS region transcription start site region 163157
Tssr160765 X 37172441 to 37172449 8 + TSS region transcription start site region 160765
Gm33339 X 37172741 to 37178138 5397 + lncRNA gene predicted gene, 33339
Tssr160766 X 37178179 to 37178181 2 + TSS region transcription start site region 160766
Tssr160767 X 37179598 to 37179607 9 + TSS region transcription start site region 160767
Ndufa1 X 37187588 to 37191163 3575 - protein coding gene NADH:ubiquinone oxidoreductase subunit A1
Tssr160768 X 37190440 to 37190444 4 + TSS region transcription start site region 160768
Cpgi22675 X 37190916 to 37192102 1186 CpG island CpG island 22675
Tssr163158 X 37191104 to 37191148 44 - TSS region transcription start site region 163158
Tssr163159 X 37191160 to 37191196 36 - TSS region transcription start site region 163159
Tssr160769 X 37191220 to 37191320 100 + TSS region transcription start site region 160769
Rnf113a1 X 37191245 to 37192467 1222 + protein coding gene ring finger protein 113A1
Tssr163160 X 37194799 to 37194800 1 - TSS region transcription start site region 163160
Gm9 X 37209348 to 37211041 1693 - protein coding gene predicted gene 9
Tssr163161 X 37210998 to 37211010 12 - TSS region transcription start site region 163161
Tssr163162 X 37211045 to 37211054 9 - TSS region transcription start site region 163162
Rhox1 X 37213804 to 37222258 8454 - protein coding gene reproductive homeobox 1
Tssr163163 X 37218269 to 37218281 12 - TSS region transcription start site region 163163
Tssr163164 X 37218330 to 37218337 7 - TSS region transcription start site region 163164
Rhox2a X 37244992 to 37249690 4698 + protein coding gene reproductive homeobox 2A
Rhox3a X 37249919 to 37258978 9059 + protein coding gene reproductive homeobox 3A
Rhox4a X 37265338 to 37270132 4794 + protein coding gene reproductive homeobox 4A
Rhox3a2 X 37380383 to 37384431 4048 + protein coding gene reproductive homeobox 3A2
Rhox4a2 X 37390860 to 37395621 4761 + protein coding gene reproductive homeobox 4A2
Rhox2b X 37412067 to 37416806 4739 + protein coding gene reproductive homeobox 2B
Rhox3b-ps X 37417012 to 37425963 8951 + pseudogene reproductive homeobox 3B, pseudogene
Rhox4b X 37432494 to 37437278 4784 + protein coding gene reproductive homeobox 4B
Rhox2c X 37453480 to 37458417 4937 + protein coding gene reproductive homeobox 2C
Rhox3c X 37469868 to 37473961 4093 + protein coding gene reproductive homeobox 3C
Rhox4c X 37480337 to 37485124 4787 + protein coding gene reproductive homeobox 4C
Rhox2d X 37493428 to 37497623 4195 + protein coding gene reproductive homeobox 2D
Gm26494 X 37499317 to 37499459 142 + snoRNA gene predicted gene, 26494
Rhox3d-ps X 37503844 to 37507806 3962 + pseudogene reproductive homeobox 3D, pseudogene
Rhox4d X 37514385 to 37519176 4791 + protein coding gene reproductive homeobox 4D
Rhox2e X 37530452 to 37541813 11361 + protein coding gene reproductive homeobox 2E
Rhox3e X 37546975 to 37550897 3922 + protein coding gene reproductive homeobox 3E
Rhox4e X 37557412 to 37562283 4871 + protein coding gene reproductive homeobox 4E
Gm38640 X 37567741 to 37581396 13655 - lncRNA gene predicted gene, 38640
Rhox2f X 37571421 to 37576159 4738 + protein coding gene reproductive homeobox 2F
Rhox3f X 37581352 to 37585496 4144 + protein coding gene reproductive homeobox 3F
Rhox4f X 37602895 to 37607686 4791 - protein coding gene reproductive homeobox 4F
Rhox3g X 37623431 to 37628139 4708 - protein coding gene reproductive homeobox 3G
Dppa3-ps X 37625647 to 37626097 450 - pseudogene developmental pluripotency-associated 3, pseudogene
Gm24493 X 37632205 to 37632347 142 - snoRNA gene predicted gene, 24493
Rhox2g X 37639115 to 37643470 4355 - protein coding gene reproductive homeobox 2G
Rhox4g X 37646501 to 37651327 4826 - protein coding gene reproductive homeobox 4G
Rhox3h X 37657688 to 37668764 11076 - protein coding gene reproductive homeobox 3H
Gm24147 X 37667233 to 37667376 143 - snoRNA gene predicted gene, 24147
Rhox2h X 37668997 to 37673277 4280 - protein coding gene reproductive homeobox 2H
Rhox7-ps2 X 37676370 to 37679547 3177 - pseudogene reproductive homeobox 7, pseudogene 2
Rhox2-ps X 37682921 to 37683431 510 - pseudogene reproductive homeobox 2, pseudogene
Tssr5611 X 37753936 to 37753937 1 + TSS region transcription start site region 5611
Tssr5612 X 37754591 to 37754633 42 + TSS region transcription start site region 5612
Tssr5613 X 37804760 to 37804778 18 + TSS region transcription start site region 5613
Rhox5 X 37804842 to 37808876 4034 + protein coding gene reproductive homeobox 5
Tssr5614 X 37805217 to 37805232 15 - TSS region transcription start site region 5614
Gm34522 X 37816375 to 37817607 1232 - lncRNA gene predicted gene, 34522
Tssr160770 X 37826955 to 37826962 7 + TSS region transcription start site region 160770
Tssr160771 X 37827007 to 37827010 3 + TSS region transcription start site region 160771
Tssr160772 X 37827013 to 37827019 6 + TSS region transcription start site region 160772
Tssr160773 X 37827044 to 37827047 3 + TSS region transcription start site region 160773
Rhox6 X 37827055 to 37829857 2802 + protein coding gene reproductive homeobox 6
Tssr160774 X 37827361 to 37827425 64 + TSS region transcription start site region 160774
Rhox7a X 37831686 to 37841171 9485 + protein coding gene reproductive homeobox 7A
Rhox8 X 37874778 to 37878944 4166 - protein coding gene reproductive homeobox 8
Tssr163165 X 37878486 to 37878498 12 - TSS region transcription start site region 163165
Tssr163166 X 37878507 to 37878512 5 - TSS region transcription start site region 163166
Tssr163167 X 37878521 to 37878533 12 - TSS region transcription start site region 163167
Tssr163168 X 37878562 to 37878565 3 - TSS region transcription start site region 163168
Tssr163169 X 37878586 to 37878602 16 - TSS region transcription start site region 163169
Tssr163170 X 37878815 to 37878820 5 - TSS region transcription start site region 163170
Tssr163171 X 37878827 to 37878848 21 - TSS region transcription start site region 163171
Tssr163172 X 37879033 to 37879037 4 - TSS region transcription start site region 163172