Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:20959026-21399040

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32 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Uxt X 20951665 to 20962034 10369 - protein coding gene ubiquitously expressed prefoldin like chaperone
Cpgi22652 X 20961579 to 20962217 638 CpG island CpG island 22652
Tssr160696 X 20961667 to 20961674 7 + TSS region transcription start site region 160696
A230072C01Rik X 20961684 to 20986737 25053 + lncRNA gene RIKEN cDNA A230072C01 gene
Tssr160697 X 20961850 to 20961856 6 + TSS region transcription start site region 160697
Tssr163106 X 20961968 to 20961987 19 - TSS region transcription start site region 163106
Tssr163107 X 20962005 to 20962025 20 - TSS region transcription start site region 163107
Tssr160698 X 20962095 to 20962135 40 + TSS region transcription start site region 160698
Zfp182 X 21028939 to 21062316 33377 - protein coding gene zinc finger protein 182
Tssr163108 X 21058218 to 21058225 7 - TSS region transcription start site region 163108
Cpgi22653 X 21061976 to 21062168 192 CpG island CpG island 22653
Tssr163109 X 21061981 to 21062062 81 - TSS region transcription start site region 163109
Tssr160699 X 21068427 to 21068433 6 + TSS region transcription start site region 160699
Tssr160700 X 21068435 to 21068447 12 + TSS region transcription start site region 160700
Spaca5 X 21068488 to 21077959 9471 + protein coding gene sperm acrosome associated 5
Zfp300 X 21079174 to 21089527 10353 - protein coding gene zinc finger protein 300
Tssr163110 X 21089130 to 21089136 6 - TSS region transcription start site region 163110
Ssxa1 X 21118414 to 21122088 3674 + protein coding gene synovial sarcoma, X member A1
Tssr160701 X 21146684 to 21146689 5 + TSS region transcription start site region 160701
Gm1848 X 21146844 to 21147640 796 + pseudogene predicted gene 1848
Gm5932 X 21169950 to 21179036 9086 - protein coding gene predicted gene 5932
Gm21876 X 21174439 to 21175653 1214 - protein coding gene predicted gene, 21876
Tssr163111 X 21179026 to 21179040 14 - TSS region transcription start site region 163111
4930453H23Rik X 21206580 to 21221665 15085 - lincRNA gene RIKEN cDNA 4930453H23 gene
Tssr163112 X 21221653 to 21221666 13 - TSS region transcription start site region 163112
Gm6938 X 21312210 to 21334727 22517 - lincRNA gene predicted gene 6938
Cpgi22654 X 21360792 to 21361091 299 CpG island CpG island 22654
Tssr160702 X 21360834 to 21360851 17 + TSS region transcription start site region 160702
Tssr160703 X 21360856 to 21360899 43 + TSS region transcription start site region 160703
Gm5124 X 21360865 to 21364622 3757 + pseudogene predicted pseudogene 5124
Gm26593 X 21360865 to 21364622 3757 - lincRNA gene predicted gene, 26593
Tssr160704 X 21360904 to 21360930 26 + TSS region transcription start site region 160704