Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:20865904-21855930

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Syn1 X 20860511 to 20920918 60407 - protein coding gene synapsin I
Timp1 X 20870166 to 20874735 4569 + protein coding gene tissue inhibitor of metalloproteinase 1
Tssr160688 X 20870215 to 20870226 11 + TSS region transcription start site region 160688
Tssr160689 X 20870236 to 20870273 37 + TSS region transcription start site region 160689
Tssr160690 X 20870276 to 20870298 22 + TSS region transcription start site region 160690
Tssr160691 X 20871109 to 20871128 19 + TSS region transcription start site region 160691
Tssr160692 X 20872777 to 20872820 43 + TSS region transcription start site region 160692
Gm15029 X 20911596 to 20911794 198 + pseudogene predicted gene 15029
Cpgi22650 X 20920331 to 20921223 892 CpG island CpG island 22650
Tssr163089 X 20920911 to 20920927 16 - TSS region transcription start site region 163089
Cfp X 20925454 to 20931555 6101 - protein coding gene complement factor properdin
Tssr160693 X 20925525 to 20925540 15 + TSS region transcription start site region 160693
Tssr160694 X 20925707 to 20925733 26 + TSS region transcription start site region 160694
Tssr163090 X 20927685 to 20927706 21 - TSS region transcription start site region 163090
Tssr163091 X 20928057 to 20928075 18 - TSS region transcription start site region 163091
Tssr163092 X 20928098 to 20928117 19 - TSS region transcription start site region 163092
Tssr163093 X 20928382 to 20928394 12 - TSS region transcription start site region 163093
Tssr163094 X 20928504 to 20928515 11 - TSS region transcription start site region 163094
Tssr160695 X 20928643 to 20928661 18 + TSS region transcription start site region 160695
Tssr163095 X 20928772 to 20928783 11 - TSS region transcription start site region 163095
Tssr163096 X 20929667 to 20929696 29 - TSS region transcription start site region 163096
Tssr163097 X 20929702 to 20929716 14 - TSS region transcription start site region 163097
Tssr163098 X 20929802 to 20929829 27 - TSS region transcription start site region 163098
Tssr163099 X 20929855 to 20929870 15 - TSS region transcription start site region 163099
Tssr163100 X 20931239 to 20931255 16 - TSS region transcription start site region 163100
Tssr163101 X 20931463 to 20931481 18 - TSS region transcription start site region 163101
Tssr163102 X 20931495 to 20931517 22 - TSS region transcription start site region 163102
Tssr163103 X 20931520 to 20931534 14 - TSS region transcription start site region 163103
1500032P08Rik X 20931853 to 20932757 904 unclassified gene RIKEN cDNA 1500032P08 gene
Elk1 X 20933395 to 20950608 17213 - protein coding gene ELK1, member of ETS oncogene family
Cpgi22651 X 20950364 to 20950560 196 CpG island CpG island 22651
Tssr163104 X 20950545 to 20950593 48 - TSS region transcription start site region 163104
Tssr163105 X 20950597 to 20950613 16 - TSS region transcription start site region 163105
Uxt X 20951665 to 20962034 10369 - protein coding gene ubiquitously expressed prefoldin like chaperone
Cpgi22652 X 20961579 to 20962217 638 CpG island CpG island 22652
Tssr160696 X 20961667 to 20961674 7 + TSS region transcription start site region 160696
A230072C01Rik X 20961684 to 20986737 25053 + lncRNA gene RIKEN cDNA A230072C01 gene
Tssr160697 X 20961850 to 20961856 6 + TSS region transcription start site region 160697
Tssr163106 X 20961968 to 20961987 19 - TSS region transcription start site region 163106
Tssr163107 X 20962005 to 20962025 20 - TSS region transcription start site region 163107
Tssr160698 X 20962095 to 20962135 40 + TSS region transcription start site region 160698
Zfp182 X 21028939 to 21062316 33377 - protein coding gene zinc finger protein 182
Tssr163108 X 21058218 to 21058225 7 - TSS region transcription start site region 163108
Cpgi22653 X 21061976 to 21062168 192 CpG island CpG island 22653
Tssr163109 X 21061981 to 21062062 81 - TSS region transcription start site region 163109
Tssr160699 X 21068427 to 21068433 6 + TSS region transcription start site region 160699
Tssr160700 X 21068435 to 21068447 12 + TSS region transcription start site region 160700
Spaca5 X 21068488 to 21077959 9471 + protein coding gene sperm acrosome associated 5
Zfp300 X 21079174 to 21089527 10353 - protein coding gene zinc finger protein 300
Tssr163110 X 21089130 to 21089136 6 - TSS region transcription start site region 163110
Ssxa1 X 21118414 to 21122088 3674 + protein coding gene synovial sarcoma, X member A1
Tssr160701 X 21146684 to 21146689 5 + TSS region transcription start site region 160701
Gm1848 X 21146844 to 21147640 796 + pseudogene predicted gene 1848
Gm5932 X 21169950 to 21179036 9086 - protein coding gene predicted gene 5932
Gm21876 X 21174439 to 21175653 1214 - protein coding gene predicted gene, 21876
Tssr163111 X 21179026 to 21179040 14 - TSS region transcription start site region 163111
4930453H23Rik X 21206580 to 21221665 15085 - lincRNA gene RIKEN cDNA 4930453H23 gene
Tssr163112 X 21221653 to 21221666 13 - TSS region transcription start site region 163112
Gm6938 X 21312210 to 21334727 22517 - lincRNA gene predicted gene 6938
Cpgi22654 X 21360792 to 21361091 299 CpG island CpG island 22654
Tssr160702 X 21360834 to 21360851 17 + TSS region transcription start site region 160702
Tssr160703 X 21360856 to 21360899 43 + TSS region transcription start site region 160703
Gm26593 X 21360865 to 21364622 3757 - lincRNA gene predicted gene, 26593
Gm5124 X 21360865 to 21364622 3757 + pseudogene predicted pseudogene 5124
Tssr160704 X 21360904 to 21360930 26 + TSS region transcription start site region 160704
Tssr5602 X 21475312 to 21475320 8 + TSS region transcription start site region 5602
Tssr160705 X 21484532 to 21484547 15 + TSS region transcription start site region 160705
Agtr2 X 21484549 to 21488833 4284 + protein coding gene angiotensin II receptor, type 2
Tssr160706 X 21484561 to 21484573 12 + TSS region transcription start site region 160706
Tssr160707 X 21484607 to 21484638 31 + TSS region transcription start site region 160707
Tssr160708 X 21487309 to 21487335 26 + TSS region transcription start site region 160708
Gm22592 X 21500366 to 21500496 130 - snoRNA gene predicted gene, 22592
Gm9439 X 21504054 to 21505466 1412 + pseudogene predicted gene 9439
Gm14558 X 21618130 to 21618510 380 - pseudogene predicted gene 14558
Tssr163113 X 21680576 to 21680584 8 - TSS region transcription start site region 163113
Slc6a14 X 21714900 to 21742358 27458 + protein coding gene solute carrier family 6 (neurotransmitter transporter), member 14
Tssr163114 X 21714902 to 21714938 36 - TSS region transcription start site region 163114
Tssr160709 X 21715034 to 21715053 19 + TSS region transcription start site region 160709
Tssr160710 X 21715077 to 21715092 15 + TSS region transcription start site region 160710
Tssr160711 X 21715094 to 21715103 9 + TSS region transcription start site region 160711
Gm25553 X 21716017 to 21716095 78 + rRNA gene predicted gene, 25553
Gm28269 X 21743440 to 21745097 1657 - protein coding gene predicted gene 28269
Tssr163115 X 21745106 to 21745114 8 - TSS region transcription start site region 163115
Gm28268 X 21751379 to 21761733 10354 + lincRNA gene predicted gene 28268