Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:20861579-21062217

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50 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Syn1 X 20860511 to 20920918 60407 - protein coding gene synapsin I
Tssr163085 X 20862096 to 20862109 13 - TSS region transcription start site region 163085
Tssr163086 X 20862173 to 20862185 12 - TSS region transcription start site region 163086
Tssr163087 X 20862297 to 20862308 11 - TSS region transcription start site region 163087
Tssr163088 X 20862353 to 20862358 5 - TSS region transcription start site region 163088
Mir5617 X 20863126 to 20863182 56 - miRNA gene microRNA 5617
Timp1 X 20870166 to 20874735 4569 + protein coding gene tissue inhibitor of metalloproteinase 1
Tssr160688 X 20870215 to 20870226 11 + TSS region transcription start site region 160688
Tssr160689 X 20870236 to 20870273 37 + TSS region transcription start site region 160689
Tssr160690 X 20870276 to 20870298 22 + TSS region transcription start site region 160690
Tssr160691 X 20871109 to 20871128 19 + TSS region transcription start site region 160691
Tssr160692 X 20872777 to 20872820 43 + TSS region transcription start site region 160692
Gm15029 X 20911596 to 20911794 198 + pseudogene predicted gene 15029
Cpgi22650 X 20920331 to 20921223 892 CpG island CpG island 22650
Tssr163089 X 20920911 to 20920927 16 - TSS region transcription start site region 163089
Cfp X 20925454 to 20931555 6101 - protein coding gene complement factor properdin
Tssr160693 X 20925525 to 20925540 15 + TSS region transcription start site region 160693
Tssr160694 X 20925707 to 20925733 26 + TSS region transcription start site region 160694
Tssr163090 X 20927685 to 20927706 21 - TSS region transcription start site region 163090
Tssr163091 X 20928057 to 20928075 18 - TSS region transcription start site region 163091
Tssr163092 X 20928098 to 20928117 19 - TSS region transcription start site region 163092
Tssr163093 X 20928382 to 20928394 12 - TSS region transcription start site region 163093
Tssr163094 X 20928504 to 20928515 11 - TSS region transcription start site region 163094
Tssr160695 X 20928643 to 20928661 18 + TSS region transcription start site region 160695
Tssr163095 X 20928772 to 20928783 11 - TSS region transcription start site region 163095
Tssr163096 X 20929667 to 20929696 29 - TSS region transcription start site region 163096
Tssr163097 X 20929702 to 20929716 14 - TSS region transcription start site region 163097
Tssr163098 X 20929802 to 20929829 27 - TSS region transcription start site region 163098
Tssr163099 X 20929855 to 20929870 15 - TSS region transcription start site region 163099
Tssr163100 X 20931239 to 20931255 16 - TSS region transcription start site region 163100
Tssr163101 X 20931463 to 20931481 18 - TSS region transcription start site region 163101
Tssr163102 X 20931495 to 20931517 22 - TSS region transcription start site region 163102
Tssr163103 X 20931520 to 20931534 14 - TSS region transcription start site region 163103
1500032P08Rik X 20931853 to 20932757 904 unclassified gene RIKEN cDNA 1500032P08 gene
Elk1 X 20933395 to 20950608 17213 - protein coding gene ELK1, member of ETS oncogene family
Cpgi22651 X 20950364 to 20950560 196 CpG island CpG island 22651
Tssr163104 X 20950545 to 20950593 48 - TSS region transcription start site region 163104
Tssr163105 X 20950597 to 20950613 16 - TSS region transcription start site region 163105
Uxt X 20951665 to 20962034 10369 - protein coding gene ubiquitously expressed prefoldin like chaperone
Cpgi22652 X 20961579 to 20962217 638 CpG island CpG island 22652
Tssr160696 X 20961667 to 20961674 7 + TSS region transcription start site region 160696
A230072C01Rik X 20961684 to 20986737 25053 + lncRNA gene RIKEN cDNA A230072C01 gene
Tssr160697 X 20961850 to 20961856 6 + TSS region transcription start site region 160697
Tssr163106 X 20961968 to 20961987 19 - TSS region transcription start site region 163106
Tssr163107 X 20962005 to 20962025 20 - TSS region transcription start site region 163107
Tssr160698 X 20962095 to 20962135 40 + TSS region transcription start site region 160698
Zfp182 X 21028939 to 21062316 33377 - protein coding gene zinc finger protein 182
Tssr163108 X 21058218 to 21058225 7 - TSS region transcription start site region 163108
Cpgi22653 X 21061976 to 21062168 192 CpG island CpG island 22653
Tssr163109 X 21061981 to 21062062 81 - TSS region transcription start site region 163109