Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:20697789-20897824

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cdk16 X 20687954 to 20699880 11926 + protein coding gene cyclin-dependent kinase 16
Tssr160675 X 20698714 to 20698732 18 + TSS region transcription start site region 160675
Tssr160676 X 20698743 to 20698778 35 + TSS region transcription start site region 160676
Usp11 X 20703906 to 20720539 16633 + protein coding gene ubiquitin specific peptidase 11
Tssr160677 X 20703908 to 20703909 1 + TSS region transcription start site region 160677
Cpgi22648 X 20703913 to 20704578 665 CpG island CpG island 22648
Tssr160678 X 20703922 to 20703951 29 + TSS region transcription start site region 160678
Tssr5601 X 20708506 to 20708511 5 + TSS region transcription start site region 5601
Gm39499 X 20709590 to 20711621 2031 + lncRNA gene predicted gene, 39499
Tssr160679 X 20719805 to 20719818 13 + TSS region transcription start site region 160679
DXMit57 X 20740544 to 20740656 112 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 57
Bw1 X 20740544 to 48090348 27349804 QTL body weight QTL 1
Gm39500 X 20775461 to 20783201 7740 + protein coding gene predicted gene, 39500
Tssr160680 X 20797779 to 20797784 5 + TSS region transcription start site region 160680
Tssr160681 X 20797789 to 20797824 35 + TSS region transcription start site region 160681
Araf X 20797814 to 20860519 62705 + protein coding gene Araf proto-oncogene, serine/threonine kinase
Tssr160682 X 20798391 to 20798414 23 + TSS region transcription start site region 160682
Gm26065 X 20800332 to 20800436 104 - snRNA gene predicted gene, 26065
Tssr160683 X 20806502 to 20806509 7 + TSS region transcription start site region 160683
Gm24824 X 20823737 to 20823814 77 - miRNA gene predicted gene, 24824
Gm15028 X 20842105 to 20842474 369 - pseudogene predicted gene 15028
Tssr160684 X 20842327 to 20842350 23 + TSS region transcription start site region 160684
Tssr160685 X 20845372 to 20845380 8 + TSS region transcription start site region 160685
Tssr160686 X 20848559 to 20848583 24 + TSS region transcription start site region 160686
Cpgi22649 X 20848581 to 20848860 279 CpG island CpG island 22649
Tssr160687 X 20853344 to 20853370 26 + TSS region transcription start site region 160687
Syn1 X 20860511 to 20920918 60407 - protein coding gene synapsin I
Tssr163075 X 20860925 to 20860939 14 - TSS region transcription start site region 163075
Tssr163076 X 20860977 to 20861000 23 - TSS region transcription start site region 163076
Tssr163077 X 20861007 to 20861032 25 - TSS region transcription start site region 163077
Tssr163078 X 20861060 to 20861121 61 - TSS region transcription start site region 163078
Tssr163079 X 20861131 to 20861168 37 - TSS region transcription start site region 163079
Tssr163080 X 20861176 to 20861198 22 - TSS region transcription start site region 163080
Tssr163081 X 20861212 to 20861244 32 - TSS region transcription start site region 163081
Tssr163082 X 20861419 to 20861430 11 - TSS region transcription start site region 163082
Tssr163083 X 20861443 to 20861465 22 - TSS region transcription start site region 163083
Tssr163084 X 20861524 to 20861537 13 - TSS region transcription start site region 163084
Tssr163085 X 20862096 to 20862109 13 - TSS region transcription start site region 163085
Tssr163086 X 20862173 to 20862185 12 - TSS region transcription start site region 163086
Tssr163087 X 20862297 to 20862308 11 - TSS region transcription start site region 163087
Tssr163088 X 20862353 to 20862358 5 - TSS region transcription start site region 163088
Mir5617 X 20863126 to 20863182 56 - miRNA gene microRNA 5617
Timp1 X 20870166 to 20874735 4569 + protein coding gene tissue inhibitor of metalloproteinase 1
Tssr160688 X 20870215 to 20870226 11 + TSS region transcription start site region 160688
Tssr160689 X 20870236 to 20870273 37 + TSS region transcription start site region 160689
Tssr160690 X 20870276 to 20870298 22 + TSS region transcription start site region 160690
Tssr160691 X 20871109 to 20871128 19 + TSS region transcription start site region 160691
Tssr160692 X 20872777 to 20872820 43 + TSS region transcription start site region 160692