Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:20517954-20869880

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Jade3 X 20425688 to 20519939 94251 + protein coding gene jade family PHD finger 3
Gm14538 X 20528125 to 20529395 1270 + pseudogene predicted gene 14538
Tssr160644 X 20547738 to 20547742 4 + TSS region transcription start site region 160644
Tssr160645 X 20548223 to 20548235 12 + TSS region transcription start site region 160645
Tssr160646 X 20549706 to 20549717 11 + TSS region transcription start site region 160646
Tssr160647 X 20549780 to 20549796 16 + TSS region transcription start site region 160647
Rgn X 20549787 to 20562089 12302 + protein coding gene regucalcin
Tssr160648 X 20552323 to 20552341 18 + TSS region transcription start site region 160648
Tssr160649 X 20557559 to 20557568 9 + TSS region transcription start site region 160649
Tssr5600 X 20559430 to 20559441 11 - TSS region transcription start site region 5600
Gm14539 X 20581141 to 20581314 173 - pseudogene predicted gene 14539
Tssr163070 X 20581334 to 20581371 37 - TSS region transcription start site region 163070
Gm23628 X 20614523 to 20614695 172 - snRNA gene predicted gene, 23628
Ndufb11 X 20615326 to 20617564 2238 - protein coding gene NADH:ubiquinone oxidoreductase subunit B11
Cpgi22645 X 20617003 to 20617435 432 CpG island CpG island 22645
Tssr163071 X 20617262 to 20617289 27 - TSS region transcription start site region 163071
Tssr163072 X 20617448 to 20617471 23 - TSS region transcription start site region 163072
Rbm10 X 20617503 to 20650901 33398 + protein coding gene RNA binding motif protein 10
Tssr163073 X 20617574 to 20617618 44 - TSS region transcription start site region 163073
Tssr160650 X 20617757 to 20617816 59 + TSS region transcription start site region 160650
Cpgi22646 X 20617795 to 20618301 506 CpG island CpG island 22646
Tssr163074 X 20618196 to 20618218 22 - TSS region transcription start site region 163074
Tssr160651 X 20641882 to 20641919 37 + TSS region transcription start site region 160651
Uba1 X 20658326 to 20683179 24853 + protein coding gene ubiquitin-like modifier activating enzyme 1
Tssr160652 X 20658389 to 20658402 13 + TSS region transcription start site region 160652
Tssr160653 X 20658413 to 20658447 34 + TSS region transcription start site region 160653
Tssr160654 X 20658450 to 20658479 29 + TSS region transcription start site region 160654
Tssr160655 X 20659000 to 20659005 5 + TSS region transcription start site region 160655
Tssr160656 X 20659010 to 20659031 21 + TSS region transcription start site region 160656
Tssr160657 X 20662898 to 20662909 11 + TSS region transcription start site region 160657
Tssr160658 X 20662916 to 20662943 27 + TSS region transcription start site region 160658
Tssr160659 X 20671347 to 20671365 18 + TSS region transcription start site region 160659
Tssr160660 X 20672987 to 20672999 12 + TSS region transcription start site region 160660
Tssr160661 X 20678691 to 20678719 28 + TSS region transcription start site region 160661
Tssr160662 X 20680045 to 20680071 26 + TSS region transcription start site region 160662
Tssr160663 X 20680791 to 20680818 27 + TSS region transcription start site region 160663
Tssr160664 X 20681157 to 20681171 14 + TSS region transcription start site region 160664
Tssr160665 X 20681333 to 20681366 33 + TSS region transcription start site region 160665
Tssr160666 X 20682140 to 20682156 16 + TSS region transcription start site region 160666
Cdk16 X 20687954 to 20699880 11926 + protein coding gene cyclin-dependent kinase 16
Tssr160667 X 20687964 to 20688039 75 + TSS region transcription start site region 160667
Cpgi22647 X 20688187 to 20689201 1014 CpG island CpG island 22647
Tssr160668 X 20688379 to 20688481 102 + TSS region transcription start site region 160668
Tssr160669 X 20688482 to 20688532 50 + TSS region transcription start site region 160669
Tssr160670 X 20688558 to 20688570 12 + TSS region transcription start site region 160670
Tssr160671 X 20692863 to 20692908 45 + TSS region transcription start site region 160671
Tssr160672 X 20694127 to 20694146 19 + TSS region transcription start site region 160672
Tssr160673 X 20695504 to 20695529 25 + TSS region transcription start site region 160673
Tssr160674 X 20696545 to 20696558 13 + TSS region transcription start site region 160674
Tssr160675 X 20698714 to 20698732 18 + TSS region transcription start site region 160675
Tssr160676 X 20698743 to 20698778 35 + TSS region transcription start site region 160676
Usp11 X 20703906 to 20720539 16633 + protein coding gene ubiquitin specific peptidase 11
Tssr160677 X 20703908 to 20703909 1 + TSS region transcription start site region 160677
Cpgi22648 X 20703913 to 20704578 665 CpG island CpG island 22648
Tssr160678 X 20703922 to 20703951 29 + TSS region transcription start site region 160678
Tssr5601 X 20708506 to 20708511 5 + TSS region transcription start site region 5601
Gm39499 X 20709590 to 20711621 2031 + lncRNA gene predicted gene, 39499
Tssr160679 X 20719805 to 20719818 13 + TSS region transcription start site region 160679
DXMit57 X 20740544 to 20740656 112 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 57
Bw1 X 20740544 to 48090348 27349804 QTL body weight QTL 1
Gm39500 X 20775461 to 20783201 7740 + protein coding gene predicted gene, 39500
Tssr160680 X 20797779 to 20797784 5 + TSS region transcription start site region 160680
Tssr160681 X 20797789 to 20797824 35 + TSS region transcription start site region 160681
Araf X 20797814 to 20860519 62705 + protein coding gene Araf proto-oncogene, serine/threonine kinase
Tssr160682 X 20798391 to 20798414 23 + TSS region transcription start site region 160682
Gm26065 X 20800332 to 20800436 104 - snRNA gene predicted gene, 26065
Tssr160683 X 20806502 to 20806509 7 + TSS region transcription start site region 160683
Gm24824 X 20823737 to 20823814 77 - miRNA gene predicted gene, 24824
Gm15028 X 20842105 to 20842474 369 - pseudogene predicted gene 15028
Tssr160684 X 20842327 to 20842350 23 + TSS region transcription start site region 160684
Tssr160685 X 20845372 to 20845380 8 + TSS region transcription start site region 160685
Tssr160686 X 20848559 to 20848583 24 + TSS region transcription start site region 160686
Cpgi22649 X 20848581 to 20848860 279 CpG island CpG island 22649
Tssr160687 X 20853344 to 20853370 26 + TSS region transcription start site region 160687
Syn1 X 20860511 to 20920918 60407 - protein coding gene synapsin I
Tssr163075 X 20860925 to 20860939 14 - TSS region transcription start site region 163075
Tssr163076 X 20860977 to 20861000 23 - TSS region transcription start site region 163076
Tssr163077 X 20861007 to 20861032 25 - TSS region transcription start site region 163077
Tssr163078 X 20861060 to 20861121 61 - TSS region transcription start site region 163078
Tssr163079 X 20861131 to 20861168 37 - TSS region transcription start site region 163079
Tssr163080 X 20861176 to 20861198 22 - TSS region transcription start site region 163080
Tssr163081 X 20861212 to 20861244 32 - TSS region transcription start site region 163081
Tssr163082 X 20861419 to 20861430 11 - TSS region transcription start site region 163082
Tssr163083 X 20861443 to 20861465 22 - TSS region transcription start site region 163083
Tssr163084 X 20861524 to 20861537 13 - TSS region transcription start site region 163084
Tssr163085 X 20862096 to 20862109 13 - TSS region transcription start site region 163085
Tssr163086 X 20862173 to 20862185 12 - TSS region transcription start site region 163086
Tssr163087 X 20862297 to 20862308 11 - TSS region transcription start site region 163087
Tssr163088 X 20862353 to 20862358 5 - TSS region transcription start site region 163088
Mir5617 X 20863126 to 20863182 56 - miRNA gene microRNA 5617