Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:20111131-21611168

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187 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc9a7 X 20105754 to 20291807 186053 - protein coding gene solute carrier family 9 (sodium/hydrogen exchanger), member 7
Tssr163064 X 20146124 to 20146132 8 - TSS region transcription start site region 163064
Tssr163065 X 20146137 to 20146149 12 - TSS region transcription start site region 163065
Tssr163066 X 20171438 to 20171439 1 - TSS region transcription start site region 163066
Tssr5599 X 20239387 to 20239391 4 + TSS region transcription start site region 5599
Gm9083 X 20239469 to 20240287 818 + pseudogene predicted gene 9083
Cpgi22643 X 20291286 to 20292184 898 CpG island CpG island 22643
Tssr163067 X 20291728 to 20291775 47 - TSS region transcription start site region 163067
Tssr163068 X 20291776 to 20291834 58 - TSS region transcription start site region 163068
Tssr163069 X 20307282 to 20307286 4 - TSS region transcription start site region 163069
DXMit164 X 20318055 to 20318173 118 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 164
Gm14529 X 20339299 to 20339704 405 + pseudogene predicted gene 14529
Rp2 X 20364481 to 20405653 41172 + protein coding gene retinitis pigmentosa 2 homolog
Tssr160636 X 20364555 to 20364616 61 + TSS region transcription start site region 160636
Tssr160637 X 20364641 to 20364666 25 + TSS region transcription start site region 160637
Tssr160638 X 20364672 to 20364683 11 + TSS region transcription start site region 160638
Gm9085 X 20382750 to 20383821 1071 - pseudogene predicted gene 9085
Tssr160639 X 20385166 to 20385182 16 + TSS region transcription start site region 160639
Gm14537 X 20391710 to 20392239 529 + pseudogene predicted gene 14537
Cpgi22644 X 20425159 to 20426471 1312 CpG island CpG island 22644
Tssr160640 X 20425359 to 20425378 19 + TSS region transcription start site region 160640
Jade3 X 20425688 to 20519939 94251 + protein coding gene jade family PHD finger 3
Tssr160641 X 20425743 to 20425762 19 + TSS region transcription start site region 160641
Tssr160642 X 20425780 to 20425794 14 + TSS region transcription start site region 160642
Gm14884 X 20459490 to 20459685 195 - pseudogene predicted gene 14884
Tssr160643 X 20483466 to 20483467 1 + TSS region transcription start site region 160643
Gm14538 X 20528125 to 20529395 1270 + pseudogene predicted gene 14538
Tssr160644 X 20547738 to 20547742 4 + TSS region transcription start site region 160644
Tssr160645 X 20548223 to 20548235 12 + TSS region transcription start site region 160645
Tssr160646 X 20549706 to 20549717 11 + TSS region transcription start site region 160646
Tssr160647 X 20549780 to 20549796 16 + TSS region transcription start site region 160647
Rgn X 20549787 to 20562089 12302 + protein coding gene regucalcin
Tssr160648 X 20552323 to 20552341 18 + TSS region transcription start site region 160648
Tssr160649 X 20557559 to 20557568 9 + TSS region transcription start site region 160649
Tssr5600 X 20559430 to 20559441 11 - TSS region transcription start site region 5600
Gm14539 X 20581141 to 20581314 173 - pseudogene predicted gene 14539
Tssr163070 X 20581334 to 20581371 37 - TSS region transcription start site region 163070
Gm23628 X 20614523 to 20614695 172 - snRNA gene predicted gene, 23628
Ndufb11 X 20615326 to 20617564 2238 - protein coding gene NADH:ubiquinone oxidoreductase subunit B11
Cpgi22645 X 20617003 to 20617435 432 CpG island CpG island 22645
Tssr163071 X 20617262 to 20617289 27 - TSS region transcription start site region 163071
Tssr163072 X 20617448 to 20617471 23 - TSS region transcription start site region 163072
Rbm10 X 20617503 to 20650901 33398 + protein coding gene RNA binding motif protein 10
Tssr163073 X 20617574 to 20617618 44 - TSS region transcription start site region 163073
Tssr160650 X 20617757 to 20617816 59 + TSS region transcription start site region 160650
Cpgi22646 X 20617795 to 20618301 506 CpG island CpG island 22646
Tssr163074 X 20618196 to 20618218 22 - TSS region transcription start site region 163074
Tssr160651 X 20641882 to 20641919 37 + TSS region transcription start site region 160651
Uba1 X 20658326 to 20683179 24853 + protein coding gene ubiquitin-like modifier activating enzyme 1
Tssr160652 X 20658389 to 20658402 13 + TSS region transcription start site region 160652
Tssr160653 X 20658413 to 20658447 34 + TSS region transcription start site region 160653
Tssr160654 X 20658450 to 20658479 29 + TSS region transcription start site region 160654
Tssr160655 X 20659000 to 20659005 5 + TSS region transcription start site region 160655
Tssr160656 X 20659010 to 20659031 21 + TSS region transcription start site region 160656
Tssr160657 X 20662898 to 20662909 11 + TSS region transcription start site region 160657
Tssr160658 X 20662916 to 20662943 27 + TSS region transcription start site region 160658
Tssr160659 X 20671347 to 20671365 18 + TSS region transcription start site region 160659
Tssr160660 X 20672987 to 20672999 12 + TSS region transcription start site region 160660
Tssr160661 X 20678691 to 20678719 28 + TSS region transcription start site region 160661
Tssr160662 X 20680045 to 20680071 26 + TSS region transcription start site region 160662
Tssr160663 X 20680791 to 20680818 27 + TSS region transcription start site region 160663
Tssr160664 X 20681157 to 20681171 14 + TSS region transcription start site region 160664
Tssr160665 X 20681333 to 20681366 33 + TSS region transcription start site region 160665
Tssr160666 X 20682140 to 20682156 16 + TSS region transcription start site region 160666
Cdk16 X 20687954 to 20699880 11926 + protein coding gene cyclin-dependent kinase 16
Tssr160667 X 20687964 to 20688039 75 + TSS region transcription start site region 160667
Cpgi22647 X 20688187 to 20689201 1014 CpG island CpG island 22647
Tssr160668 X 20688379 to 20688481 102 + TSS region transcription start site region 160668
Tssr160669 X 20688482 to 20688532 50 + TSS region transcription start site region 160669
Tssr160670 X 20688558 to 20688570 12 + TSS region transcription start site region 160670
Tssr160671 X 20692863 to 20692908 45 + TSS region transcription start site region 160671
Tssr160672 X 20694127 to 20694146 19 + TSS region transcription start site region 160672
Tssr160673 X 20695504 to 20695529 25 + TSS region transcription start site region 160673
Tssr160674 X 20696545 to 20696558 13 + TSS region transcription start site region 160674
Tssr160675 X 20698714 to 20698732 18 + TSS region transcription start site region 160675
Tssr160676 X 20698743 to 20698778 35 + TSS region transcription start site region 160676
Usp11 X 20703906 to 20720539 16633 + protein coding gene ubiquitin specific peptidase 11
Tssr160677 X 20703908 to 20703909 1 + TSS region transcription start site region 160677
Cpgi22648 X 20703913 to 20704578 665 CpG island CpG island 22648
Tssr160678 X 20703922 to 20703951 29 + TSS region transcription start site region 160678
Tssr5601 X 20708506 to 20708511 5 + TSS region transcription start site region 5601
Gm39499 X 20709590 to 20711621 2031 + lncRNA gene predicted gene, 39499
Tssr160679 X 20719805 to 20719818 13 + TSS region transcription start site region 160679
DXMit57 X 20740544 to 20740656 112 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 57
Bw1 X 20740544 to 48090348 27349804 QTL body weight QTL 1
Gm39500 X 20775461 to 20783201 7740 + protein coding gene predicted gene, 39500
Tssr160680 X 20797779 to 20797784 5 + TSS region transcription start site region 160680
Tssr160681 X 20797789 to 20797824 35 + TSS region transcription start site region 160681
Araf X 20797814 to 20860519 62705 + protein coding gene Araf proto-oncogene, serine/threonine kinase
Tssr160682 X 20798391 to 20798414 23 + TSS region transcription start site region 160682
Gm26065 X 20800332 to 20800436 104 - snRNA gene predicted gene, 26065
Tssr160683 X 20806502 to 20806509 7 + TSS region transcription start site region 160683
Gm24824 X 20823737 to 20823814 77 - miRNA gene predicted gene, 24824
Gm15028 X 20842105 to 20842474 369 - pseudogene predicted gene 15028
Tssr160684 X 20842327 to 20842350 23 + TSS region transcription start site region 160684
Tssr160685 X 20845372 to 20845380 8 + TSS region transcription start site region 160685
Tssr160686 X 20848559 to 20848583 24 + TSS region transcription start site region 160686
Cpgi22649 X 20848581 to 20848860 279 CpG island CpG island 22649
Tssr160687 X 20853344 to 20853370 26 + TSS region transcription start site region 160687
Syn1 X 20860511 to 20920918 60407 - protein coding gene synapsin I
Tssr163075 X 20860925 to 20860939 14 - TSS region transcription start site region 163075
Tssr163076 X 20860977 to 20861000 23 - TSS region transcription start site region 163076
Tssr163077 X 20861007 to 20861032 25 - TSS region transcription start site region 163077
Tssr163078 X 20861060 to 20861121 61 - TSS region transcription start site region 163078
Tssr163079 X 20861131 to 20861168 37 - TSS region transcription start site region 163079
Tssr163080 X 20861176 to 20861198 22 - TSS region transcription start site region 163080
Tssr163081 X 20861212 to 20861244 32 - TSS region transcription start site region 163081
Tssr163082 X 20861419 to 20861430 11 - TSS region transcription start site region 163082
Tssr163083 X 20861443 to 20861465 22 - TSS region transcription start site region 163083
Tssr163084 X 20861524 to 20861537 13 - TSS region transcription start site region 163084
Tssr163085 X 20862096 to 20862109 13 - TSS region transcription start site region 163085
Tssr163086 X 20862173 to 20862185 12 - TSS region transcription start site region 163086
Tssr163087 X 20862297 to 20862308 11 - TSS region transcription start site region 163087
Tssr163088 X 20862353 to 20862358 5 - TSS region transcription start site region 163088
Mir5617 X 20863126 to 20863182 56 - miRNA gene microRNA 5617
Timp1 X 20870166 to 20874735 4569 + protein coding gene tissue inhibitor of metalloproteinase 1
Tssr160688 X 20870215 to 20870226 11 + TSS region transcription start site region 160688
Tssr160689 X 20870236 to 20870273 37 + TSS region transcription start site region 160689
Tssr160690 X 20870276 to 20870298 22 + TSS region transcription start site region 160690
Tssr160691 X 20871109 to 20871128 19 + TSS region transcription start site region 160691
Tssr160692 X 20872777 to 20872820 43 + TSS region transcription start site region 160692
Gm15029 X 20911596 to 20911794 198 + pseudogene predicted gene 15029
Cpgi22650 X 20920331 to 20921223 892 CpG island CpG island 22650
Tssr163089 X 20920911 to 20920927 16 - TSS region transcription start site region 163089
Cfp X 20925454 to 20931555 6101 - protein coding gene complement factor properdin
Tssr160693 X 20925525 to 20925540 15 + TSS region transcription start site region 160693
Tssr160694 X 20925707 to 20925733 26 + TSS region transcription start site region 160694
Tssr163090 X 20927685 to 20927706 21 - TSS region transcription start site region 163090
Tssr163091 X 20928057 to 20928075 18 - TSS region transcription start site region 163091
Tssr163092 X 20928098 to 20928117 19 - TSS region transcription start site region 163092
Tssr163093 X 20928382 to 20928394 12 - TSS region transcription start site region 163093
Tssr163094 X 20928504 to 20928515 11 - TSS region transcription start site region 163094
Tssr160695 X 20928643 to 20928661 18 + TSS region transcription start site region 160695
Tssr163095 X 20928772 to 20928783 11 - TSS region transcription start site region 163095
Tssr163096 X 20929667 to 20929696 29 - TSS region transcription start site region 163096
Tssr163097 X 20929702 to 20929716 14 - TSS region transcription start site region 163097
Tssr163098 X 20929802 to 20929829 27 - TSS region transcription start site region 163098
Tssr163099 X 20929855 to 20929870 15 - TSS region transcription start site region 163099
Tssr163100 X 20931239 to 20931255 16 - TSS region transcription start site region 163100
Tssr163101 X 20931463 to 20931481 18 - TSS region transcription start site region 163101
Tssr163102 X 20931495 to 20931517 22 - TSS region transcription start site region 163102
Tssr163103 X 20931520 to 20931534 14 - TSS region transcription start site region 163103
1500032P08Rik X 20931853 to 20932757 904 unclassified gene RIKEN cDNA 1500032P08 gene
Elk1 X 20933395 to 20950608 17213 - protein coding gene ELK1, member of ETS oncogene family
Cpgi22651 X 20950364 to 20950560 196 CpG island CpG island 22651
Tssr163104 X 20950545 to 20950593 48 - TSS region transcription start site region 163104
Tssr163105 X 20950597 to 20950613 16 - TSS region transcription start site region 163105
Uxt X 20951665 to 20962034 10369 - protein coding gene ubiquitously expressed prefoldin like chaperone
Cpgi22652 X 20961579 to 20962217 638 CpG island CpG island 22652
Tssr160696 X 20961667 to 20961674 7 + TSS region transcription start site region 160696
A230072C01Rik X 20961684 to 20986737 25053 + lncRNA gene RIKEN cDNA A230072C01 gene
Tssr160697 X 20961850 to 20961856 6 + TSS region transcription start site region 160697
Tssr163106 X 20961968 to 20961987 19 - TSS region transcription start site region 163106
Tssr163107 X 20962005 to 20962025 20 - TSS region transcription start site region 163107
Tssr160698 X 20962095 to 20962135 40 + TSS region transcription start site region 160698
Zfp182 X 21028939 to 21062316 33377 - protein coding gene zinc finger protein 182
Tssr163108 X 21058218 to 21058225 7 - TSS region transcription start site region 163108
Cpgi22653 X 21061976 to 21062168 192 CpG island CpG island 22653
Tssr163109 X 21061981 to 21062062 81 - TSS region transcription start site region 163109
Tssr160699 X 21068427 to 21068433 6 + TSS region transcription start site region 160699
Tssr160700 X 21068435 to 21068447 12 + TSS region transcription start site region 160700
Spaca5 X 21068488 to 21077959 9471 + protein coding gene sperm acrosome associated 5
Zfp300 X 21079174 to 21089527 10353 - protein coding gene zinc finger protein 300
Tssr163110 X 21089130 to 21089136 6 - TSS region transcription start site region 163110
Ssxa1 X 21118414 to 21122088 3674 + protein coding gene synovial sarcoma, X member A1
Tssr160701 X 21146684 to 21146689 5 + TSS region transcription start site region 160701
Gm1848 X 21146844 to 21147640 796 + pseudogene predicted gene 1848
Gm5932 X 21169950 to 21179036 9086 - protein coding gene predicted gene 5932
Gm21876 X 21174439 to 21175653 1214 - protein coding gene predicted gene, 21876
Tssr163111 X 21179026 to 21179040 14 - TSS region transcription start site region 163111
4930453H23Rik X 21206580 to 21221665 15085 - lincRNA gene RIKEN cDNA 4930453H23 gene
Tssr163112 X 21221653 to 21221666 13 - TSS region transcription start site region 163112
Gm6938 X 21312210 to 21334727 22517 - lincRNA gene predicted gene 6938
Cpgi22654 X 21360792 to 21361091 299 CpG island CpG island 22654
Tssr160702 X 21360834 to 21360851 17 + TSS region transcription start site region 160702
Tssr160703 X 21360856 to 21360899 43 + TSS region transcription start site region 160703
Gm26593 X 21360865 to 21364622 3757 - lincRNA gene predicted gene, 26593
Gm5124 X 21360865 to 21364622 3757 + pseudogene predicted pseudogene 5124
Tssr160704 X 21360904 to 21360930 26 + TSS region transcription start site region 160704
Tssr5602 X 21475312 to 21475320 8 + TSS region transcription start site region 5602
Tssr160705 X 21484532 to 21484547 15 + TSS region transcription start site region 160705
Agtr2 X 21484549 to 21488833 4284 + protein coding gene angiotensin II receptor, type 2
Tssr160706 X 21484561 to 21484573 12 + TSS region transcription start site region 160706
Tssr160707 X 21484607 to 21484638 31 + TSS region transcription start site region 160707
Tssr160708 X 21487309 to 21487335 26 + TSS region transcription start site region 160708
Gm22592 X 21500366 to 21500496 130 - snoRNA gene predicted gene, 22592
Gm9439 X 21504054 to 21505466 1412 + pseudogene predicted gene 9439