Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:19954555-20774616

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi22642 X 20059431 to 20061248 1817 CpG island CpG island 22642
Tssr160634 X 20059535 to 20059574 39 + TSS region transcription start site region 160634
Chst7 X 20059560 to 20097521 37961 + protein coding gene carbohydrate (N-acetylglucosamino) sulfotransferase 7
Tssr160635 X 20059581 to 20059592 11 + TSS region transcription start site region 160635
6330509M05Rik X 20098851 to 20102137 3286 unclassified non-coding RNA gene RIKEN cDNA 6330509M05 gene
Slc9a7 X 20105754 to 20291807 186053 - protein coding gene solute carrier family 9 (sodium/hydrogen exchanger), member 7
Tssr163064 X 20146124 to 20146132 8 - TSS region transcription start site region 163064
Tssr163065 X 20146137 to 20146149 12 - TSS region transcription start site region 163065
Tssr163066 X 20171438 to 20171439 1 - TSS region transcription start site region 163066
Tssr5599 X 20239387 to 20239391 4 + TSS region transcription start site region 5599
Gm9083 X 20239469 to 20240287 818 + pseudogene predicted gene 9083
Cpgi22643 X 20291286 to 20292184 898 CpG island CpG island 22643
Tssr163067 X 20291728 to 20291775 47 - TSS region transcription start site region 163067
Tssr163068 X 20291776 to 20291834 58 - TSS region transcription start site region 163068
Tssr163069 X 20307282 to 20307286 4 - TSS region transcription start site region 163069
DXMit164 X 20318055 to 20318173 118 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 164
Gm14529 X 20339299 to 20339704 405 + pseudogene predicted gene 14529
Rp2 X 20364481 to 20405653 41172 + protein coding gene retinitis pigmentosa 2 homolog
Tssr160636 X 20364555 to 20364616 61 + TSS region transcription start site region 160636
Tssr160637 X 20364641 to 20364666 25 + TSS region transcription start site region 160637
Tssr160638 X 20364672 to 20364683 11 + TSS region transcription start site region 160638
Gm9085 X 20382750 to 20383821 1071 - pseudogene predicted gene 9085
Tssr160639 X 20385166 to 20385182 16 + TSS region transcription start site region 160639
Gm14537 X 20391710 to 20392239 529 + pseudogene predicted gene 14537
Cpgi22644 X 20425159 to 20426471 1312 CpG island CpG island 22644
Tssr160640 X 20425359 to 20425378 19 + TSS region transcription start site region 160640
Jade3 X 20425688 to 20519939 94251 + protein coding gene jade family PHD finger 3
Tssr160641 X 20425743 to 20425762 19 + TSS region transcription start site region 160641
Tssr160642 X 20425780 to 20425794 14 + TSS region transcription start site region 160642
Gm14884 X 20459490 to 20459685 195 - pseudogene predicted gene 14884
Tssr160643 X 20483466 to 20483467 1 + TSS region transcription start site region 160643
Gm14538 X 20528125 to 20529395 1270 + pseudogene predicted gene 14538
Tssr160644 X 20547738 to 20547742 4 + TSS region transcription start site region 160644
Tssr160645 X 20548223 to 20548235 12 + TSS region transcription start site region 160645
Tssr160646 X 20549706 to 20549717 11 + TSS region transcription start site region 160646
Tssr160647 X 20549780 to 20549796 16 + TSS region transcription start site region 160647
Rgn X 20549787 to 20562089 12302 + protein coding gene regucalcin
Tssr160648 X 20552323 to 20552341 18 + TSS region transcription start site region 160648
Tssr160649 X 20557559 to 20557568 9 + TSS region transcription start site region 160649
Tssr5600 X 20559430 to 20559441 11 - TSS region transcription start site region 5600
Gm14539 X 20581141 to 20581314 173 - pseudogene predicted gene 14539
Tssr163070 X 20581334 to 20581371 37 - TSS region transcription start site region 163070
Gm23628 X 20614523 to 20614695 172 - snRNA gene predicted gene, 23628
Ndufb11 X 20615326 to 20617564 2238 - protein coding gene NADH:ubiquinone oxidoreductase subunit B11
Cpgi22645 X 20617003 to 20617435 432 CpG island CpG island 22645
Tssr163071 X 20617262 to 20617289 27 - TSS region transcription start site region 163071
Tssr163072 X 20617448 to 20617471 23 - TSS region transcription start site region 163072
Rbm10 X 20617503 to 20650901 33398 + protein coding gene RNA binding motif protein 10
Tssr163073 X 20617574 to 20617618 44 - TSS region transcription start site region 163073
Tssr160650 X 20617757 to 20617816 59 + TSS region transcription start site region 160650
Cpgi22646 X 20617795 to 20618301 506 CpG island CpG island 22646
Tssr163074 X 20618196 to 20618218 22 - TSS region transcription start site region 163074
Tssr160651 X 20641882 to 20641919 37 + TSS region transcription start site region 160651
Uba1 X 20658326 to 20683179 24853 + protein coding gene ubiquitin-like modifier activating enzyme 1
Tssr160652 X 20658389 to 20658402 13 + TSS region transcription start site region 160652
Tssr160653 X 20658413 to 20658447 34 + TSS region transcription start site region 160653
Tssr160654 X 20658450 to 20658479 29 + TSS region transcription start site region 160654
Tssr160655 X 20659000 to 20659005 5 + TSS region transcription start site region 160655
Tssr160656 X 20659010 to 20659031 21 + TSS region transcription start site region 160656
Tssr160657 X 20662898 to 20662909 11 + TSS region transcription start site region 160657
Tssr160658 X 20662916 to 20662943 27 + TSS region transcription start site region 160658
Tssr160659 X 20671347 to 20671365 18 + TSS region transcription start site region 160659
Tssr160660 X 20672987 to 20672999 12 + TSS region transcription start site region 160660
Tssr160661 X 20678691 to 20678719 28 + TSS region transcription start site region 160661
Tssr160662 X 20680045 to 20680071 26 + TSS region transcription start site region 160662
Tssr160663 X 20680791 to 20680818 27 + TSS region transcription start site region 160663
Tssr160664 X 20681157 to 20681171 14 + TSS region transcription start site region 160664
Tssr160665 X 20681333 to 20681366 33 + TSS region transcription start site region 160665
Tssr160666 X 20682140 to 20682156 16 + TSS region transcription start site region 160666
Cdk16 X 20687954 to 20699880 11926 + protein coding gene cyclin-dependent kinase 16
Tssr160667 X 20687964 to 20688039 75 + TSS region transcription start site region 160667
Cpgi22647 X 20688187 to 20689201 1014 CpG island CpG island 22647
Tssr160668 X 20688379 to 20688481 102 + TSS region transcription start site region 160668
Tssr160669 X 20688482 to 20688532 50 + TSS region transcription start site region 160669
Tssr160670 X 20688558 to 20688570 12 + TSS region transcription start site region 160670
Tssr160671 X 20692863 to 20692908 45 + TSS region transcription start site region 160671
Tssr160672 X 20694127 to 20694146 19 + TSS region transcription start site region 160672
Tssr160673 X 20695504 to 20695529 25 + TSS region transcription start site region 160673
Tssr160674 X 20696545 to 20696558 13 + TSS region transcription start site region 160674
Tssr160675 X 20698714 to 20698732 18 + TSS region transcription start site region 160675
Tssr160676 X 20698743 to 20698778 35 + TSS region transcription start site region 160676
Usp11 X 20703906 to 20720539 16633 + protein coding gene ubiquitin specific peptidase 11
Tssr160677 X 20703908 to 20703909 1 + TSS region transcription start site region 160677
Cpgi22648 X 20703913 to 20704578 665 CpG island CpG island 22648
Tssr160678 X 20703922 to 20703951 29 + TSS region transcription start site region 160678
Tssr5601 X 20708506 to 20708511 5 + TSS region transcription start site region 5601
Gm39499 X 20709590 to 20711621 2031 + lncRNA gene predicted gene, 39499
Tssr160679 X 20719805 to 20719818 13 + TSS region transcription start site region 160679
DXMit57 X 20740544 to 20740656 112 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 57
Bw1 X 20740544 to 48090348 27349804 QTL body weight QTL 1