Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:17697483-20637494

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124 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr160621 X 17725443 to 17725462 19 + TSS region transcription start site region 160621
Gm39498 X 17776754 to 17809103 32349 - lncRNA gene predicted gene, 39498
Gm5755 X 17880670 to 17881506 836 - pseudogene predicted pseudogene 5755
Gm5123 X 17912982 to 17913818 836 - pseudogene predicted pseudogene 5123
Gm35506 X 18100250 to 18105623 5373 - lncRNA gene predicted gene, 35506
Gm41891 X 18115964 to 18147122 31158 - lncRNA gene predicted gene, 41891
Tssr160622 X 18145851 to 18145877 26 + TSS region transcription start site region 160622
Dusp21 X 18145870 to 18146694 824 + protein coding gene dual specificity phosphatase 21
Tssr160623 X 18145882 to 18145883 1 + TSS region transcription start site region 160623
Tssr163037 X 18147089 to 18147101 12 - TSS region transcription start site region 163037
Gm4730 X 18155283 to 18155457 174 - pseudogene predicted gene 4730
Cpgi22640 X 18161980 to 18163899 1919 CpG island CpG island 22640
Kdm6a X 18162575 to 18279936 117361 + protein coding gene lysine (K)-specific demethylase 6A
Tssr160624 X 18162602 to 18162657 55 + TSS region transcription start site region 160624
Tssr160625 X 18162664 to 18162682 18 + TSS region transcription start site region 160625
Tssr160626 X 18162692 to 18162701 9 + TSS region transcription start site region 160626
Tssr5596 X 18162721 to 18162730 9 + TSS region transcription start site region 5596
Tssr160627 X 18163056 to 18163061 5 + TSS region transcription start site region 160627
DXErtd770e X 18208272 to 18208488 216 DNA segment DNA segment, Chr X, ERATO Doi 770, expressed
Tssr160628 X 18226859 to 18226863 4 + TSS region transcription start site region 160628
n-R5s5 X 18323444 to 18323562 118 - rRNA gene nuclear encoded rRNA 5S 5
Gm14883 X 18343798 to 18343954 156 + pseudogene predicted gene 14883
Dipk2b X 18414881 to 18461397 46516 - protein coding gene divergent protein kinase domain 2B
Tssr163038 X 18461266 to 18461280 14 - TSS region transcription start site region 163038
Tssr163039 X 18461285 to 18461323 38 - TSS region transcription start site region 163039
Tssr163040 X 18461385 to 18461402 17 - TSS region transcription start site region 163040
Gm6923 X 18920804 to 18921209 405 + pseudogene predicted pseudogene 6923
Gm5383 X 18942612 to 18943228 616 + pseudogene predicted gene 5383
Tssr160629 X 19112457 to 19112468 11 + TSS region transcription start site region 160629
Mir221 X 19146294 to 19146388 94 - miRNA gene microRNA 221
Tssr163041 X 19146298 to 19146312 14 - TSS region transcription start site region 163041
Tssr163042 X 19146889 to 19146904 15 - TSS region transcription start site region 163042
Mir222 X 19146893 to 19146971 78 - miRNA gene microRNA 222
Tssr163043 X 19148998 to 19149005 7 - TSS region transcription start site region 163043
Tssr5597 X 19149035 to 19149048 13 - TSS region transcription start site region 5597
Tssr163044 X 19149084 to 19149103 19 - TSS region transcription start site region 163044
Tssr163045 X 19150651 to 19150663 12 - TSS region transcription start site region 163045
Tssr163046 X 19150670 to 19150692 22 - TSS region transcription start site region 163046
Tssr163047 X 19150773 to 19150790 17 - TSS region transcription start site region 163047
Tssr163048 X 19150874 to 19150887 13 - TSS region transcription start site region 163048
Tssr163049 X 19153478 to 19153507 29 - TSS region transcription start site region 163049
Tssr163050 X 19153647 to 19153660 13 - TSS region transcription start site region 163050
Tssr163051 X 19153869 to 19153906 37 - TSS region transcription start site region 163051
Tssr163052 X 19153994 to 19154017 23 - TSS region transcription start site region 163052
Tssr163053 X 19154205 to 19154227 22 - TSS region transcription start site region 163053
Gm14636 X 19156981 to 19167241 10260 - lncRNA gene predicted gene 14636
Tssr160630 X 19160624 to 19160637 13 + TSS region transcription start site region 160630
Tssr163054 X 19161579 to 19161592 13 - TSS region transcription start site region 163054
Tssr163055 X 19161941 to 19161956 15 - TSS region transcription start site region 163055
Tssr163056 X 19167237 to 19167244 7 - TSS region transcription start site region 163056
Tssr160631 X 19167456 to 19167468 12 + TSS region transcription start site region 160631
Tssr160632 X 19167483 to 19167494 11 + TSS region transcription start site region 160632
Tssr163057 X 19168262 to 19168278 16 - TSS region transcription start site region 163057
Tssr163058 X 19168305 to 19168317 12 - TSS region transcription start site region 163058
Tssr163059 X 19202576 to 19202617 41 - TSS region transcription start site region 163059
Tssr160633 X 19202874 to 19202905 31 + TSS region transcription start site region 160633
Tssr163060 X 19206372 to 19206392 20 - TSS region transcription start site region 163060
Tssr163061 X 19219147 to 19219152 5 - TSS region transcription start site region 163061
Gm26652 X 19224789 to 19237856 13067 - lincRNA gene predicted gene, 26652
Tssr163062 X 19236026 to 19236035 9 - TSS region transcription start site region 163062
Gm41892 X 19236085 to 19242458 6373 + lncRNA gene predicted gene, 41892
Cpgi22641 X 19237366 to 19238135 769 CpG island CpG island 22641
Tssr163063 X 19237841 to 19237860 19 - TSS region transcription start site region 163063
Gm22783 X 19355001 to 19355107 106 + snRNA gene predicted gene, 22783
Gm14885 X 19386291 to 19386786 495 - pseudogene predicted gene 14885
Tex13c3 X 19479424 to 19481319 1895 - protein coding gene TEX13 family member C3
Tssr5598 X 19704020 to 19704023 3 + TSS region transcription start site region 5598
Gm14531 X 19726653 to 19727031 378 + pseudogene predicted gene 14531
Gm23678 X 19762668 to 19762774 106 - snRNA gene predicted gene, 23678
Gm14530 X 19762933 to 19763265 332 - pseudogene predicted gene 14530
Rpl36-ps10 X 19870824 to 19871039 215 + pseudogene ribosomal protein L36, pseudogene 10
Gm5384 X 19893657 to 19894119 462 + pseudogene predicted gene 5384
Cpgi22642 X 20059431 to 20061248 1817 CpG island CpG island 22642
Tssr160634 X 20059535 to 20059574 39 + TSS region transcription start site region 160634
Chst7 X 20059560 to 20097521 37961 + protein coding gene carbohydrate (N-acetylglucosamino) sulfotransferase 7
Tssr160635 X 20059581 to 20059592 11 + TSS region transcription start site region 160635
6330509M05Rik X 20098851 to 20102137 3286 unclassified non-coding RNA gene RIKEN cDNA 6330509M05 gene
Slc9a7 X 20105754 to 20291807 186053 - protein coding gene solute carrier family 9 (sodium/hydrogen exchanger), member 7
Tssr163064 X 20146124 to 20146132 8 - TSS region transcription start site region 163064
Tssr163065 X 20146137 to 20146149 12 - TSS region transcription start site region 163065
Tssr163066 X 20171438 to 20171439 1 - TSS region transcription start site region 163066
Tssr5599 X 20239387 to 20239391 4 + TSS region transcription start site region 5599
Gm9083 X 20239469 to 20240287 818 + pseudogene predicted gene 9083
Cpgi22643 X 20291286 to 20292184 898 CpG island CpG island 22643
Tssr163067 X 20291728 to 20291775 47 - TSS region transcription start site region 163067
Tssr163068 X 20291776 to 20291834 58 - TSS region transcription start site region 163068
Tssr163069 X 20307282 to 20307286 4 - TSS region transcription start site region 163069
DXMit164 X 20318055 to 20318173 118 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 164
Gm14529 X 20339299 to 20339704 405 + pseudogene predicted gene 14529
Rp2 X 20364481 to 20405653 41172 + protein coding gene retinitis pigmentosa 2 homolog
Tssr160636 X 20364555 to 20364616 61 + TSS region transcription start site region 160636
Tssr160637 X 20364641 to 20364666 25 + TSS region transcription start site region 160637
Tssr160638 X 20364672 to 20364683 11 + TSS region transcription start site region 160638
Gm9085 X 20382750 to 20383821 1071 - pseudogene predicted gene 9085
Tssr160639 X 20385166 to 20385182 16 + TSS region transcription start site region 160639
Gm14537 X 20391710 to 20392239 529 + pseudogene predicted gene 14537
Cpgi22644 X 20425159 to 20426471 1312 CpG island CpG island 22644
Tssr160640 X 20425359 to 20425378 19 + TSS region transcription start site region 160640
Jade3 X 20425688 to 20519939 94251 + protein coding gene jade family PHD finger 3
Tssr160641 X 20425743 to 20425762 19 + TSS region transcription start site region 160641
Tssr160642 X 20425780 to 20425794 14 + TSS region transcription start site region 160642
Gm14884 X 20459490 to 20459685 195 - pseudogene predicted gene 14884
Tssr160643 X 20483466 to 20483467 1 + TSS region transcription start site region 160643
Gm14538 X 20528125 to 20529395 1270 + pseudogene predicted gene 14538
Tssr160644 X 20547738 to 20547742 4 + TSS region transcription start site region 160644
Tssr160645 X 20548223 to 20548235 12 + TSS region transcription start site region 160645
Tssr160646 X 20549706 to 20549717 11 + TSS region transcription start site region 160646
Tssr160647 X 20549780 to 20549796 16 + TSS region transcription start site region 160647
Rgn X 20549787 to 20562089 12302 + protein coding gene regucalcin
Tssr160648 X 20552323 to 20552341 18 + TSS region transcription start site region 160648
Tssr160649 X 20557559 to 20557568 9 + TSS region transcription start site region 160649
Tssr5600 X 20559430 to 20559441 11 - TSS region transcription start site region 5600
Gm14539 X 20581141 to 20581314 173 - pseudogene predicted gene 14539
Tssr163070 X 20581334 to 20581371 37 - TSS region transcription start site region 163070
Gm23628 X 20614523 to 20614695 172 - snRNA gene predicted gene, 23628
Ndufb11 X 20615326 to 20617564 2238 - protein coding gene NADH:ubiquinone oxidoreductase subunit B11
Cpgi22645 X 20617003 to 20617435 432 CpG island CpG island 22645
Tssr163071 X 20617262 to 20617289 27 - TSS region transcription start site region 163071
Tssr163072 X 20617448 to 20617471 23 - TSS region transcription start site region 163072
Rbm10 X 20617503 to 20650901 33398 + protein coding gene RNA binding motif protein 10
Tssr163073 X 20617574 to 20617618 44 - TSS region transcription start site region 163073
Tssr160650 X 20617757 to 20617816 59 + TSS region transcription start site region 160650
Cpgi22646 X 20617795 to 20618301 506 CpG island CpG island 22646
Tssr163074 X 20618196 to 20618218 22 - TSS region transcription start site region 163074