Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:17135283-19175457

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Efhc2 X 17132049 to 17319368 187319 - protein coding gene EF-hand domain (C-terminal) containing 2
Tssr163029 X 17251295 to 17251323 28 - TSS region transcription start site region 163029
Gm35105 X 17251541 to 17454628 203087 + lncRNA gene predicted gene, 35105
Tssr160619 X 17251545 to 17251558 13 + TSS region transcription start site region 160619
Gm14514 X 17252741 to 17254397 1656 + pseudogene predicted gene 14514
Tssr163030 X 17319316 to 17319334 18 - TSS region transcription start site region 163030
Tssr163031 X 17319365 to 17319400 35 - TSS region transcription start site region 163031
Cpgi22638 X 17319380 to 17319583 203 CpG island CpG island 22638
Gm22294 X 17325315 to 17325418 103 + snRNA gene predicted gene, 22294
Gm39497 X 17393298 to 17516990 123692 - lncRNA gene predicted gene, 39497
Cpgi22639 X 17513528 to 17513706 178 CpG island CpG island 22639
Fundc1 X 17556564 to 17572325 15761 - protein coding gene FUN14 domain containing 1
Tssr163032 X 17571563 to 17571595 32 - TSS region transcription start site region 163032
Tssr163033 X 17572177 to 17572213 36 - TSS region transcription start site region 163033
Tssr163034 X 17572217 to 17572228 11 - TSS region transcription start site region 163034
Tssr163035 X 17572241 to 17572279 38 - TSS region transcription start site region 163035
Tssr163036 X 17572282 to 17572296 14 - TSS region transcription start site region 163036
Tssr160620 X 17609654 to 17609689 35 + TSS region transcription start site region 160620
Gm5073 X 17626257 to 17627076 819 + pseudogene predicted pseudogene 5073
Gm9436 X 17674430 to 17676284 1854 - pseudogene predicted gene 9436
Tssr160621 X 17725443 to 17725462 19 + TSS region transcription start site region 160621
Gm39498 X 17776754 to 17809103 32349 - lncRNA gene predicted gene, 39498
Gm5755 X 17880670 to 17881506 836 - pseudogene predicted pseudogene 5755
Gm5123 X 17912982 to 17913818 836 - pseudogene predicted pseudogene 5123
Gm35506 X 18100250 to 18105623 5373 - lncRNA gene predicted gene, 35506
Gm41891 X 18115964 to 18147122 31158 - lncRNA gene predicted gene, 41891
Tssr160622 X 18145851 to 18145877 26 + TSS region transcription start site region 160622
Dusp21 X 18145870 to 18146694 824 + protein coding gene dual specificity phosphatase 21
Tssr160623 X 18145882 to 18145883 1 + TSS region transcription start site region 160623
Tssr163037 X 18147089 to 18147101 12 - TSS region transcription start site region 163037
Gm4730 X 18155283 to 18155457 174 - pseudogene predicted gene 4730
Cpgi22640 X 18161980 to 18163899 1919 CpG island CpG island 22640
Kdm6a X 18162575 to 18279936 117361 + protein coding gene lysine (K)-specific demethylase 6A
Tssr160624 X 18162602 to 18162657 55 + TSS region transcription start site region 160624
Tssr160625 X 18162664 to 18162682 18 + TSS region transcription start site region 160625
Tssr160626 X 18162692 to 18162701 9 + TSS region transcription start site region 160626
Tssr5596 X 18162721 to 18162730 9 + TSS region transcription start site region 5596
Tssr160627 X 18163056 to 18163061 5 + TSS region transcription start site region 160627
DXErtd770e X 18208272 to 18208488 216 DNA segment DNA segment, Chr X, ERATO Doi 770, expressed
Tssr160628 X 18226859 to 18226863 4 + TSS region transcription start site region 160628
n-R5s5 X 18323444 to 18323562 118 - rRNA gene nuclear encoded rRNA 5S 5
Gm14883 X 18343798 to 18343954 156 + pseudogene predicted gene 14883
Dipk2b X 18414881 to 18461397 46516 - protein coding gene divergent protein kinase domain 2B
Tssr163038 X 18461266 to 18461280 14 - TSS region transcription start site region 163038
Tssr163039 X 18461285 to 18461323 38 - TSS region transcription start site region 163039
Tssr163040 X 18461385 to 18461402 17 - TSS region transcription start site region 163040
Gm6923 X 18920804 to 18921209 405 + pseudogene predicted pseudogene 6923
Gm5383 X 18942612 to 18943228 616 + pseudogene predicted gene 5383
Tssr160629 X 19112457 to 19112468 11 + TSS region transcription start site region 160629
Mir221 X 19146294 to 19146388 94 - miRNA gene microRNA 221
Tssr163041 X 19146298 to 19146312 14 - TSS region transcription start site region 163041
Tssr163042 X 19146889 to 19146904 15 - TSS region transcription start site region 163042
Mir222 X 19146893 to 19146971 78 - miRNA gene microRNA 222
Tssr163043 X 19148998 to 19149005 7 - TSS region transcription start site region 163043
Tssr5597 X 19149035 to 19149048 13 - TSS region transcription start site region 5597
Tssr163044 X 19149084 to 19149103 19 - TSS region transcription start site region 163044
Tssr163045 X 19150651 to 19150663 12 - TSS region transcription start site region 163045
Tssr163046 X 19150670 to 19150692 22 - TSS region transcription start site region 163046
Tssr163047 X 19150773 to 19150790 17 - TSS region transcription start site region 163047
Tssr163048 X 19150874 to 19150887 13 - TSS region transcription start site region 163048
Tssr163049 X 19153478 to 19153507 29 - TSS region transcription start site region 163049
Tssr163050 X 19153647 to 19153660 13 - TSS region transcription start site region 163050
Tssr163051 X 19153869 to 19153906 37 - TSS region transcription start site region 163051
Tssr163052 X 19153994 to 19154017 23 - TSS region transcription start site region 163052
Tssr163053 X 19154205 to 19154227 22 - TSS region transcription start site region 163053
Gm14636 X 19156981 to 19167241 10260 - lncRNA gene predicted gene 14636
Tssr160630 X 19160624 to 19160637 13 + TSS region transcription start site region 160630
Tssr163054 X 19161579 to 19161592 13 - TSS region transcription start site region 163054
Tssr163055 X 19161941 to 19161956 15 - TSS region transcription start site region 163055
Tssr163056 X 19167237 to 19167244 7 - TSS region transcription start site region 163056
Tssr160631 X 19167456 to 19167468 12 + TSS region transcription start site region 160631
Tssr160632 X 19167483 to 19167494 11 + TSS region transcription start site region 160632
Tssr163057 X 19168262 to 19168278 16 - TSS region transcription start site region 163057
Tssr163058 X 19168305 to 19168317 12 - TSS region transcription start site region 163058