Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:16916564-18212325

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41 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
DXMit53 X 16963313 to 16963429 116 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 53
Gm4203 X 17111320 to 17115627 4307 - lncRNA gene predicted gene 4203
Efhc2 X 17132049 to 17319368 187319 - protein coding gene EF-hand domain (C-terminal) containing 2
Tssr163029 X 17251295 to 17251323 28 - TSS region transcription start site region 163029
Gm35105 X 17251541 to 17454628 203087 + lncRNA gene predicted gene, 35105
Tssr160619 X 17251545 to 17251558 13 + TSS region transcription start site region 160619
Gm14514 X 17252741 to 17254397 1656 + pseudogene predicted gene 14514
Tssr163030 X 17319316 to 17319334 18 - TSS region transcription start site region 163030
Tssr163031 X 17319365 to 17319400 35 - TSS region transcription start site region 163031
Cpgi22638 X 17319380 to 17319583 203 CpG island CpG island 22638
Gm22294 X 17325315 to 17325418 103 + snRNA gene predicted gene, 22294
Gm39497 X 17393298 to 17516990 123692 - lncRNA gene predicted gene, 39497
Cpgi22639 X 17513528 to 17513706 178 CpG island CpG island 22639
Fundc1 X 17556564 to 17572325 15761 - protein coding gene FUN14 domain containing 1
Tssr163032 X 17571563 to 17571595 32 - TSS region transcription start site region 163032
Tssr163033 X 17572177 to 17572213 36 - TSS region transcription start site region 163033
Tssr163034 X 17572217 to 17572228 11 - TSS region transcription start site region 163034
Tssr163035 X 17572241 to 17572279 38 - TSS region transcription start site region 163035
Tssr163036 X 17572282 to 17572296 14 - TSS region transcription start site region 163036
Tssr160620 X 17609654 to 17609689 35 + TSS region transcription start site region 160620
Gm5073 X 17626257 to 17627076 819 + pseudogene predicted pseudogene 5073
Gm9436 X 17674430 to 17676284 1854 - pseudogene predicted gene 9436
Tssr160621 X 17725443 to 17725462 19 + TSS region transcription start site region 160621
Gm39498 X 17776754 to 17809103 32349 - lncRNA gene predicted gene, 39498
Gm5755 X 17880670 to 17881506 836 - pseudogene predicted pseudogene 5755
Gm5123 X 17912982 to 17913818 836 - pseudogene predicted pseudogene 5123
Gm35506 X 18100250 to 18105623 5373 - lncRNA gene predicted gene, 35506
Gm41891 X 18115964 to 18147122 31158 - lncRNA gene predicted gene, 41891
Tssr160622 X 18145851 to 18145877 26 + TSS region transcription start site region 160622
Dusp21 X 18145870 to 18146694 824 + protein coding gene dual specificity phosphatase 21
Tssr160623 X 18145882 to 18145883 1 + TSS region transcription start site region 160623
Tssr163037 X 18147089 to 18147101 12 - TSS region transcription start site region 163037
Gm4730 X 18155283 to 18155457 174 - pseudogene predicted gene 4730
Cpgi22640 X 18161980 to 18163899 1919 CpG island CpG island 22640
Kdm6a X 18162575 to 18279936 117361 + protein coding gene lysine (K)-specific demethylase 6A
Tssr160624 X 18162602 to 18162657 55 + TSS region transcription start site region 160624
Tssr160625 X 18162664 to 18162682 18 + TSS region transcription start site region 160625
Tssr160626 X 18162692 to 18162701 9 + TSS region transcription start site region 160626
Tssr5596 X 18162721 to 18162730 9 + TSS region transcription start site region 5596
Tssr160627 X 18163056 to 18163061 5 + TSS region transcription start site region 160627
DXErtd770e X 18208272 to 18208488 216 DNA segment DNA segment, Chr X, ERATO Doi 770, expressed