Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:168436114-169927200

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Frmpd4 X 167471309 to 168577231 1105922 - protein coding gene FERM and PDZ domain containing 4
Gm7209 X 168546009 to 168546341 332 + pseudogene predicted pseudogene 7209
Gm23197 X 168581891 to 168582002 111 - snRNA gene predicted gene, 23197
Gm39550 X 168623830 to 168624815 985 - lncRNA gene predicted gene, 39550
Msl3 X 168654117 to 168673898 19781 - protein coding gene MSL complex subunit 3
Tssr164629 X 168672482 to 168672507 25 - TSS region transcription start site region 164629
Tssr164630 X 168672528 to 168672564 36 - TSS region transcription start site region 164630
Cpgi23055 X 168673259 to 168674515 1256 CpG island CpG island 23055
Tssr164631 X 168673805 to 168673816 11 - TSS region transcription start site region 164631
Tssr164632 X 168673828 to 168673896 68 - TSS region transcription start site region 164632
Tssr164633 X 168674349 to 168674361 12 - TSS region transcription start site region 164633
Gm15233 X 168774857 to 168775256 399 - pseudogene predicted gene 15233
Arhgap6 X 168795099 to 169304435 509336 + protein coding gene Rho GTPase activating protein 6
Cpgi23056 X 168795362 to 168795752 390 CpG island CpG island 23056
Cpgi23057 X 168796034 to 168796808 774 CpG island CpG island 23057
Tssr162695 X 168869022 to 168869027 5 + TSS region transcription start site region 162695
Tssr162696 X 168874761 to 168874770 9 + TSS region transcription start site region 162696
DXMit100 X 168936280 to 168936422 142 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 100
Tssr162697 X 168997526 to 168997531 5 + TSS region transcription start site region 162697
Cpgi23058 X 169036557 to 169036874 317 CpG island CpG island 23058
Tssr162698 X 169036610 to 169036672 62 + TSS region transcription start site region 162698
Tssr162699 X 169036673 to 169036704 31 + TSS region transcription start site region 162699
Tssr162700 X 169037672 to 169037677 5 + TSS region transcription start site region 162700
Gm15261 X 169037674 to 169106536 68862 - antisense lncRNA gene predicted gene 15261
Tssr162701 X 169048387 to 169048412 25 + TSS region transcription start site region 162701
Tssr162702 X 169048948 to 169048965 17 + TSS region transcription start site region 162702
Tssr162703 X 169052859 to 169052887 28 + TSS region transcription start site region 162703
Tssr162704 X 169052890 to 169052903 13 + TSS region transcription start site region 162704
Tssr162705 X 169058800 to 169058812 12 + TSS region transcription start site region 162705
Tssr162706 X 169076771 to 169076793 22 + TSS region transcription start site region 162706
Tssr162707 X 169082522 to 169082538 16 + TSS region transcription start site region 162707
Tssr162708 X 169082607 to 169082646 39 + TSS region transcription start site region 162708
Tssr162709 X 169082740 to 169082758 18 + TSS region transcription start site region 162709
Tssr162710 X 169091652 to 169091663 11 + TSS region transcription start site region 162710
Tssr162711 X 169097805 to 169097816 11 + TSS region transcription start site region 162711
Tssr162712 X 169099152 to 169099166 14 + TSS region transcription start site region 162712
Tssr162713 X 169106659 to 169106709 50 + TSS region transcription start site region 162713
Tssr162714 X 169122292 to 169122307 15 + TSS region transcription start site region 162714
Tssr162715 X 169122318 to 169122336 18 + TSS region transcription start site region 162715
Tssr162716 X 169150262 to 169150275 13 + TSS region transcription start site region 162716
Amelx X 169176114 to 169187200 11086 - protein coding gene amelogenin, X-linked
Tssr164634 X 169182525 to 169182526 1 - TSS region transcription start site region 164634
Tssr164635 X 169187205 to 169187210 5 - TSS region transcription start site region 164635
Tssr162717 X 169220277 to 169220290 13 + TSS region transcription start site region 162717
Tssr162718 X 169258665 to 169258668 3 + TSS region transcription start site region 162718
Tssr162719 X 169267589 to 169267594 5 + TSS region transcription start site region 162719
Gm27980 X 169295009 to 169295177 168 + unclassified non-coding RNA gene predicted gene, 27980
Tssr162720 X 169302990 to 169303003 13 + TSS region transcription start site region 162720
Tssr162721 X 169303516 to 169303521 5 + TSS region transcription start site region 162721
Hccs X 169311530 to 169320371 8841 - protein coding gene holocytochrome c synthetase
Cpgi23059 X 169319797 to 169320930 1133 CpG island CpG island 23059
Tssr164636 X 169320118 to 169320133 15 - TSS region transcription start site region 164636
Tssr164637 X 169320273 to 169320383 110 - TSS region transcription start site region 164637
Tssr162722 X 169320382 to 169320420 38 + TSS region transcription start site region 162722
Tssr162723 X 169320609 to 169320634 25 + TSS region transcription start site region 162723
Gm15246 X 169320622 to 169368190 47568 + unclassified non-coding RNA gene predicted gene 15246
Tssr162724 X 169320646 to 169320657 11 + TSS region transcription start site region 162724
DXUsc1 X 169323832 to 169324154 322 DNA segment DNA segment, Chr X, University of Southern California 1
BC022960 X 169368189 to 169370003 1814 + pseudogene cDNA sequence BC022960
Gm15245 X 169447830 to 169475913 28083 + lincRNA gene predicted gene 15245
Tssr162725 X 169685149 to 169685159 10 + TSS region transcription start site region 162725
Tssr162726 X 169685191 to 169685250 59 + TSS region transcription start site region 162726
Mid1 X 169685199 to 169990798 305599 + protein coding gene midline 1
Tssr162727 X 169685254 to 169685279 25 + TSS region transcription start site region 162727
Gm25651 X 169695781 to 169695899 118 - snoRNA gene predicted gene, 25651
DXUsc2 X 169749029 to 169749340 311 DNA segment DNA segment, Chr X, University of Southern California 2
4933400A11Rik X 169776378 to 169779635 3257 - protein coding gene RIKEN cDNA 4933400A11 gene
Tssr164638 X 169779609 to 169779621 12 - TSS region transcription start site region 164638
Tssr164639 X 169779630 to 169779639 9 - TSS region transcription start site region 164639
Gm39551 X 169816763 to 169842263 25500 - lncRNA gene predicted gene, 39551
Tssr162728 X 169879596 to 169879656 60 + TSS region transcription start site region 162728
Cpgi23060 X 169879599 to 169879861 262 CpG island CpG island 23060
Tssr162729 X 169879755 to 169879774 19 + TSS region transcription start site region 162729
Tssr162730 X 169915904 to 169915925 21 + TSS region transcription start site region 162730
Tssr162731 X 169916068 to 169916082 14 + TSS region transcription start site region 162731
Tssr162732 X 169916094 to 169916117 23 + TSS region transcription start site region 162732
Tssr162733 X 169916153 to 169916156 3 + TSS region transcription start site region 162733
Tssr162734 X 169927074 to 169927103 29 + TSS region transcription start site region 162734