Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:168202805-169992816

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133 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Frmpd4 X 167471309 to 168577231 1105922 - protein coding gene FERM and PDZ domain containing 4
Tssr164627 X 168349230 to 168349256 26 - TSS region transcription start site region 164627
DXMit71 X 168353326 to 168353444 118 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 71
DXMit71.1 X 168353525 to 168353647 122 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 71.1
Gm8832 X 168366464 to 168366858 394 + pseudogene predicted gene 8832
DXMit30 X 168412387 to 168412505 118 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 30
Tssr164628 X 168419658 to 168419663 5 - TSS region transcription start site region 164628
Gm7209 X 168546009 to 168546341 332 + pseudogene predicted pseudogene 7209
Gm23197 X 168581891 to 168582002 111 - snRNA gene predicted gene, 23197
Gm39550 X 168623830 to 168624815 985 - lncRNA gene predicted gene, 39550
Msl3 X 168654117 to 168673898 19781 - protein coding gene MSL complex subunit 3
Tssr164629 X 168672482 to 168672507 25 - TSS region transcription start site region 164629
Tssr164630 X 168672528 to 168672564 36 - TSS region transcription start site region 164630
Cpgi23055 X 168673259 to 168674515 1256 CpG island CpG island 23055
Tssr164631 X 168673805 to 168673816 11 - TSS region transcription start site region 164631
Tssr164632 X 168673828 to 168673896 68 - TSS region transcription start site region 164632
Tssr164633 X 168674349 to 168674361 12 - TSS region transcription start site region 164633
Gm15233 X 168774857 to 168775256 399 - pseudogene predicted gene 15233
Arhgap6 X 168795099 to 169304435 509336 + protein coding gene Rho GTPase activating protein 6
Cpgi23056 X 168795362 to 168795752 390 CpG island CpG island 23056
Cpgi23057 X 168796034 to 168796808 774 CpG island CpG island 23057
Tssr162695 X 168869022 to 168869027 5 + TSS region transcription start site region 162695
Tssr162696 X 168874761 to 168874770 9 + TSS region transcription start site region 162696
DXMit100 X 168936280 to 168936422 142 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 100
Tssr162697 X 168997526 to 168997531 5 + TSS region transcription start site region 162697
Cpgi23058 X 169036557 to 169036874 317 CpG island CpG island 23058
Tssr162698 X 169036610 to 169036672 62 + TSS region transcription start site region 162698
Tssr162699 X 169036673 to 169036704 31 + TSS region transcription start site region 162699
Tssr162700 X 169037672 to 169037677 5 + TSS region transcription start site region 162700
Gm15261 X 169037674 to 169106536 68862 - antisense lncRNA gene predicted gene 15261
Tssr162701 X 169048387 to 169048412 25 + TSS region transcription start site region 162701
Tssr162702 X 169048948 to 169048965 17 + TSS region transcription start site region 162702
Tssr162703 X 169052859 to 169052887 28 + TSS region transcription start site region 162703
Tssr162704 X 169052890 to 169052903 13 + TSS region transcription start site region 162704
Tssr162705 X 169058800 to 169058812 12 + TSS region transcription start site region 162705
Tssr162706 X 169076771 to 169076793 22 + TSS region transcription start site region 162706
Tssr162707 X 169082522 to 169082538 16 + TSS region transcription start site region 162707
Tssr162708 X 169082607 to 169082646 39 + TSS region transcription start site region 162708
Tssr162709 X 169082740 to 169082758 18 + TSS region transcription start site region 162709
Tssr162710 X 169091652 to 169091663 11 + TSS region transcription start site region 162710
Tssr162711 X 169097805 to 169097816 11 + TSS region transcription start site region 162711
Tssr162712 X 169099152 to 169099166 14 + TSS region transcription start site region 162712
Tssr162713 X 169106659 to 169106709 50 + TSS region transcription start site region 162713
Tssr162714 X 169122292 to 169122307 15 + TSS region transcription start site region 162714
Tssr162715 X 169122318 to 169122336 18 + TSS region transcription start site region 162715
Tssr162716 X 169150262 to 169150275 13 + TSS region transcription start site region 162716
Amelx X 169176114 to 169187200 11086 - protein coding gene amelogenin, X-linked
Tssr164634 X 169182525 to 169182526 1 - TSS region transcription start site region 164634
Tssr164635 X 169187205 to 169187210 5 - TSS region transcription start site region 164635
Tssr162717 X 169220277 to 169220290 13 + TSS region transcription start site region 162717
Tssr162718 X 169258665 to 169258668 3 + TSS region transcription start site region 162718
Tssr162719 X 169267589 to 169267594 5 + TSS region transcription start site region 162719
Gm27980 X 169295009 to 169295177 168 + unclassified non-coding RNA gene predicted gene, 27980
Tssr162720 X 169302990 to 169303003 13 + TSS region transcription start site region 162720
Tssr162721 X 169303516 to 169303521 5 + TSS region transcription start site region 162721
Hccs X 169311530 to 169320371 8841 - protein coding gene holocytochrome c synthetase
Cpgi23059 X 169319797 to 169320930 1133 CpG island CpG island 23059
Tssr164636 X 169320118 to 169320133 15 - TSS region transcription start site region 164636
Tssr164637 X 169320273 to 169320383 110 - TSS region transcription start site region 164637
Tssr162722 X 169320382 to 169320420 38 + TSS region transcription start site region 162722
Tssr162723 X 169320609 to 169320634 25 + TSS region transcription start site region 162723
Gm15246 X 169320622 to 169368190 47568 + unclassified non-coding RNA gene predicted gene 15246
Tssr162724 X 169320646 to 169320657 11 + TSS region transcription start site region 162724
DXUsc1 X 169323832 to 169324154 322 DNA segment DNA segment, Chr X, University of Southern California 1
BC022960 X 169368189 to 169370003 1814 + pseudogene cDNA sequence BC022960
Gm15245 X 169447830 to 169475913 28083 + lincRNA gene predicted gene 15245
Tssr162725 X 169685149 to 169685159 10 + TSS region transcription start site region 162725
Tssr162726 X 169685191 to 169685250 59 + TSS region transcription start site region 162726
Mid1 X 169685199 to 169990798 305599 + protein coding gene midline 1
Tssr162727 X 169685254 to 169685279 25 + TSS region transcription start site region 162727
Gm25651 X 169695781 to 169695899 118 - snoRNA gene predicted gene, 25651
DXUsc2 X 169749029 to 169749340 311 DNA segment DNA segment, Chr X, University of Southern California 2
4933400A11Rik X 169776378 to 169779635 3257 - protein coding gene RIKEN cDNA 4933400A11 gene
Tssr164638 X 169779609 to 169779621 12 - TSS region transcription start site region 164638
Tssr164639 X 169779630 to 169779639 9 - TSS region transcription start site region 164639
Gm39551 X 169816763 to 169842263 25500 - lncRNA gene predicted gene, 39551
Tssr162728 X 169879596 to 169879656 60 + TSS region transcription start site region 162728
Cpgi23060 X 169879599 to 169879861 262 CpG island CpG island 23060
Tssr162729 X 169879755 to 169879774 19 + TSS region transcription start site region 162729
Tssr162730 X 169915904 to 169915925 21 + TSS region transcription start site region 162730
Tssr162731 X 169916068 to 169916082 14 + TSS region transcription start site region 162731
Tssr162732 X 169916094 to 169916117 23 + TSS region transcription start site region 162732
Tssr162733 X 169916153 to 169916156 3 + TSS region transcription start site region 162733
Tssr162734 X 169927074 to 169927103 29 + TSS region transcription start site region 162734
Tssr162735 X 169927549 to 169927589 40 + TSS region transcription start site region 162735
Tssr162736 X 169936749 to 169936756 7 + TSS region transcription start site region 162736
DXCbl1 X 169965972 to 169966156 184 DNA segment DNA segment, Chr X, Chester Beatty Laboratories, 1
G530011O06Rik X 169975043 to 169978917 3874 - unclassified non-coding RNA gene RIKEN cDNA G530011O06 gene
Cpgi23061 X 169978543 to 169978796 253 CpG island CpG island 23061
Tssr164735 X 169978774 to 169978785 11 - TSS region transcription start site region 164735
Tssr164640 X 169978856 to 169978882 26 - TSS region transcription start site region 164640
Tssr5721 X 169978908 to 169978931 23 - TSS region transcription start site region 5721
Tssr164641 X 169978936 to 169978952 16 - TSS region transcription start site region 164641
Tssr164736 X 169978974 to 169978983 9 - TSS region transcription start site region 164736
Gm15726 X 169979047 to 169985232 6185 - antisense lncRNA gene predicted gene 15726
Tssr162737 X 169979048 to 169979091 43 + TSS region transcription start site region 162737
Cpgi23062 X 169979073 to 169979418 345 CpG island CpG island 23062
Tssr162738 X 169979100 to 169979124 24 + TSS region transcription start site region 162738
Tssr162739 X 169979128 to 169979135 7 + TSS region transcription start site region 162739
Tssr164642 X 169979229 to 169979253 24 - TSS region transcription start site region 164642
Tssr162740 X 169980726 to 169980751 25 + TSS region transcription start site region 162740
Cpgi23063 X 169981808 to 169982108 300 CpG island CpG island 23063
Tssr162741 X 169981979 to 169981990 11 + TSS region transcription start site region 162741
Tssr162742 X 169983950 to 169983992 42 + TSS region transcription start site region 162742
Cpgi23064 X 169984892 to 169985275 383 CpG island CpG island 23064
Tssr164643 X 169985211 to 169985240 29 - TSS region transcription start site region 164643
Cpgi23065 X 169985783 to 169986084 301 CpG island CpG island 23065
Gm15247 X 169985801 to 169986939 1138 - antisense lncRNA gene predicted gene 15247
Tssr162743 X 169986092 to 169986129 37 + TSS region transcription start site region 162743
Tssr164644 X 169986126 to 169986141 15 - TSS region transcription start site region 164644
Tssr162744 X 169986605 to 169986638 33 + TSS region transcription start site region 162744
Cpgi23066 X 169986621 to 169987870 1249 CpG island CpG island 23066
Tssr164734 X 169986663 to 169986678 15 + TSS region transcription start site region 164734
Tssr162745 X 169986684 to 169986697 13 + TSS region transcription start site region 162745
Tssr162746 X 169987511 to 169987523 12 + TSS region transcription start site region 162746
Tssr162747 X 169987665 to 169987678 13 + TSS region transcription start site region 162747
Tssr162748 X 169987763 to 169987775 12 + TSS region transcription start site region 162748
Cpgi23067 X 169988593 to 169989581 988 CpG island CpG island 23067
Tssr162749 X 169988965 to 169988990 25 + TSS region transcription start site region 162749
Tssr162750 X 169989009 to 169989025 16 + TSS region transcription start site region 162750
Tssr162751 X 169989264 to 169989281 17 + TSS region transcription start site region 162751
Tssr162752 X 169989285 to 169989313 28 + TSS region transcription start site region 162752
Tssr162753 X 169989377 to 169989396 19 + TSS region transcription start site region 162753
Tssr164737 X 169989399 to 169989405 6 - TSS region transcription start site region 164737
Tssr162754 X 169989536 to 169989549 13 + TSS region transcription start site region 162754
Tssr162755 X 169989853 to 169989869 16 + TSS region transcription start site region 162755
Cpgi23068 X 169989943 to 169990522 579 CpG island CpG island 23068
Tssr162756 X 169989946 to 169989961 15 + TSS region transcription start site region 162756
Tssr162757 X 169989962 to 169989973 11 + TSS region transcription start site region 162757
Tssr162758 X 169990219 to 169990232 13 + TSS region transcription start site region 162758
Tssr164738 X 169990626 to 169990661 35 - TSS region transcription start site region 164738
Tssr162759 X 169990702 to 169990730 28 + TSS region transcription start site region 162759
Cpgi23069 X 169991501 to 169991687 186 CpG island CpG island 23069