Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:166680588-167980609

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93 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm1720 X 166662025 to 166689812 27787 + lincRNA gene predicted gene 1720
Gm36547 X 166802175 to 166824521 22346 - lncRNA gene predicted gene, 36547
Gm36867 X 166839965 to 166841005 1040 - lncRNA gene predicted gene, 36867
Gm36918 X 166841656 to 166852490 10834 - lncRNA gene predicted gene, 36918
Rpl7a-ps11 X 166854211 to 166855011 800 + pseudogene ribosomal protein L7A, pseudogene 11
Gm15230 X 166857669 to 166864449 6780 - lincRNA gene predicted gene 15230
Gm30354 X 166868858 to 166884582 15724 - lncRNA gene predicted gene, 30354
n-TSaga3 X 166909733 to 166909814 81 - tRNA gene nuclear encoded tRNA serine 3 (anticodon AGA)
Gm15231 X 166935469 to 166935915 446 + pseudogene predicted gene 15231
Gm44376 X 166957099 to 166957226 127 + miRNA gene predicted gene, 44376
Tssr164567 X 167007990 to 167008018 28 - TSS region transcription start site region 164567
Gm22368 X 167028889 to 167028997 108 - miRNA gene predicted gene, 22368
Gm8814 X 167028902 to 167029436 534 - pseudogene predicted gene 8814
Tssr164568 X 167029648 to 167029652 4 - TSS region transcription start site region 164568
Gm8817 X 167063449 to 167070370 6921 - lincRNA gene predicted gene 8817
Tssr164569 X 167080095 to 167080099 4 - TSS region transcription start site region 164569
Gm15232 X 167088093 to 167102090 13997 - lincRNA gene predicted gene 15232
Tssr162688 X 167089159 to 167089167 8 + TSS region transcription start site region 162688
Tssr164570 X 167091950 to 167091978 28 - TSS region transcription start site region 164570
Tssr164571 X 167102059 to 167102076 17 - TSS region transcription start site region 164571
Gm39549 X 167160158 to 167170088 9930 - lncRNA gene predicted gene, 39549
Gm15228 X 167164097 to 167171278 7181 + lincRNA gene predicted gene 15228
Tssr164572 X 167174355 to 167174368 13 - TSS region transcription start site region 164572
Tssr162689 X 167201584 to 167201620 36 + TSS region transcription start site region 162689
Tssr162690 X 167207093 to 167207096 3 + TSS region transcription start site region 162690
Tmsb4x X 167207093 to 167209315 2222 - protein coding gene thymosin, beta 4, X chromosome
Tssr164573 X 167207149 to 167207163 14 - TSS region transcription start site region 164573
Tssr164574 X 167207207 to 167207232 25 - TSS region transcription start site region 164574
Tssr162691 X 167207215 to 167207270 55 + TSS region transcription start site region 162691
Tssr164575 X 167207242 to 167207255 13 - TSS region transcription start site region 164575
Tssr164576 X 167207282 to 167207294 12 - TSS region transcription start site region 164576
Tssr164577 X 167207330 to 167207343 13 - TSS region transcription start site region 164577
Tssr164578 X 167207412 to 167207537 125 - TSS region transcription start site region 164578
Tssr162692 X 167207441 to 167207474 33 + TSS region transcription start site region 162692
Tssr162693 X 167207484 to 167207514 30 + TSS region transcription start site region 162693
Tssr164579 X 167207750 to 167207771 21 - TSS region transcription start site region 164579
Tssr164580 X 167207959 to 167207967 8 - TSS region transcription start site region 164580
Tssr164581 X 167207971 to 167208063 92 - TSS region transcription start site region 164581
Tssr164582 X 167208565 to 167208615 50 - TSS region transcription start site region 164582
Cpgi23052 X 167209064 to 167209333 269 CpG island CpG island 23052
Tssr164583 X 167209159 to 167209164 5 - TSS region transcription start site region 164583
Tssr164584 X 167209468 to 167209474 6 - TSS region transcription start site region 164584
Tssr164585 X 167210313 to 167210324 11 - TSS region transcription start site region 164585
DXMit160 X 167228266 to 167228408 142 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 160
Tssr164586 X 167229096 to 167229108 12 - TSS region transcription start site region 164586
Tssr164587 X 167229152 to 167229174 22 - TSS region transcription start site region 164587
Tssr164588 X 167241108 to 167241140 32 - TSS region transcription start site region 164588
Tssr164589 X 167241234 to 167241258 24 - TSS region transcription start site region 164589
Tssr164590 X 167241507 to 167241522 15 - TSS region transcription start site region 164590
Tssr164591 X 167241608 to 167241637 29 - TSS region transcription start site region 164591
Tlr8 X 167242696 to 167264329 21633 - protein coding gene toll-like receptor 8
Tssr164592 X 167244083 to 167244105 22 - TSS region transcription start site region 164592
Tssr164593 X 167244864 to 167244882 18 - TSS region transcription start site region 164593
Tssr162694 X 167245493 to 167245516 23 + TSS region transcription start site region 162694
Tssr164594 X 167245723 to 167245746 23 - TSS region transcription start site region 164594
Tssr164595 X 167252554 to 167252566 12 - TSS region transcription start site region 164595
Tssr164596 X 167254622 to 167254625 3 - TSS region transcription start site region 164596
Tssr164597 X 167255139 to 167255142 3 - TSS region transcription start site region 164597
Tssr164598 X 167262851 to 167262865 14 - TSS region transcription start site region 164598
Tssr164599 X 167264217 to 167264266 49 - TSS region transcription start site region 164599
Tssr164600 X 167264280 to 167264291 11 - TSS region transcription start site region 164600
Tssr164601 X 167264293 to 167264304 11 - TSS region transcription start site region 164601
DXMit223 X 167303583 to 167303683 100 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 223
Tssr164602 X 167304771 to 167304780 9 - TSS region transcription start site region 164602
Tssr164603 X 167304810 to 167304821 11 - TSS region transcription start site region 164603
Tlr7 X 167304929 to 167330558 25629 - protein coding gene toll-like receptor 7
Tssr164604 X 167307346 to 167307354 8 - TSS region transcription start site region 164604
Tssr164605 X 167307811 to 167307844 33 - TSS region transcription start site region 164605
Tssr164606 X 167307941 to 167307954 13 - TSS region transcription start site region 164606
Tssr164607 X 167308013 to 167308030 17 - TSS region transcription start site region 164607
Tssr164608 X 167308157 to 167308173 16 - TSS region transcription start site region 164608
Tssr164609 X 167308296 to 167308309 13 - TSS region transcription start site region 164609
Tssr164610 X 167328612 to 167328623 11 - TSS region transcription start site region 164610
Tssr164611 X 167330481 to 167330503 22 - TSS region transcription start site region 164611
Tssr164612 X 167330509 to 167330579 70 - TSS region transcription start site region 164612
Tssr5720 X 167330588 to 167330609 21 - TSS region transcription start site region 5720
Tssr164613 X 167333057 to 167333065 8 - TSS region transcription start site region 164613
Prps2 X 167346322 to 167382749 36427 - protein coding gene phosphoribosyl pyrophosphate synthetase 2
Tssr164614 X 167351776 to 167351783 7 - TSS region transcription start site region 164614
Gm15239 X 167361455 to 167364421 2966 + antisense lncRNA gene predicted gene 15239
Gm26368 X 167364180 to 167364297 117 - snoRNA gene predicted gene, 26368
Cpgi23053 X 167381747 to 167382709 962 CpG island CpG island 23053
Tssr164615 X 167382672 to 167382738 66 - TSS region transcription start site region 164615
Tssr164616 X 167382747 to 167382760 13 - TSS region transcription start site region 164616
Gm6744 X 167445989 to 167446531 542 - pseudogene predicted gene 6744
Tssr164617 X 167446549 to 167446567 18 - TSS region transcription start site region 164617
Tssr164618 X 167446571 to 167446587 16 - TSS region transcription start site region 164618
Frmpd4 X 167471309 to 168577231 1105922 - protein coding gene FERM and PDZ domain containing 4
Gm15238 X 167776261 to 167777556 1295 + pseudogene predicted gene 15238
Tssr164619 X 167855061 to 167855081 20 - TSS region transcription start site region 164619
Gm24772 X 167902315 to 167902424 109 + rRNA gene predicted gene, 24772
DXMit29 X 167906434 to 167906583 149 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 29
Tssr164620 X 167966635 to 167966638 3 - TSS region transcription start site region 164620