Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:165885614-167285625

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123 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bw3 X 134639291 to 166515599 31876308 QTL body weight QTL 3
Gm15224 X 166024033 to 166024420 387 - pseudogene predicted gene 15224
Gm15225 X 166062282 to 166070237 7955 + pseudogene predicted gene 15225
Cpgi23047 X 166170240 to 166170644 404 CpG island CpG island 23047
Tssr162669 X 166170449 to 166170512 63 + TSS region transcription start site region 162669
Gemin8 X 166170454 to 166190512 20058 + protein coding gene gem nuclear organelle associated protein 8
Gm15227 X 166205854 to 166206252 398 + pseudogene predicted gene 15227
Tssr5719 X 166217264 to 166217265 1 + TSS region transcription start site region 5719
Tssr162670 X 166238768 to 166238782 14 + TSS region transcription start site region 162670
Tssr162671 X 166238784 to 166238795 11 + TSS region transcription start site region 162671
Tssr162672 X 166238797 to 166238811 14 + TSS region transcription start site region 162672
Cpgi23048 X 166238816 to 166239509 693 CpG island CpG island 23048
Tssr162673 X 166238901 to 166238914 13 + TSS region transcription start site region 162673
Gpm6b X 166238911 to 166388988 150077 + protein coding gene glycoprotein m6b
Tssr162674 X 166238923 to 166239024 101 + TSS region transcription start site region 162674
Tssr162675 X 166239026 to 166239054 28 + TSS region transcription start site region 162675
DXErtd242e X 166254824 to 166255048 224 DNA segment DNA segment, Chr X, ERATO Doi 242, expressed
Tssr162676 X 166344758 to 166344770 12 + TSS region transcription start site region 162676
Tssr162677 X 166344784 to 166344914 130 + TSS region transcription start site region 162677
Tssr162678 X 166344992 to 166345031 39 + TSS region transcription start site region 162678
Tssr162679 X 166346609 to 166346612 3 + TSS region transcription start site region 162679
Tssr162680 X 166357654 to 166357658 4 + TSS region transcription start site region 162680
Tssr162681 X 166372666 to 166372677 11 + TSS region transcription start site region 162681
Tssr162682 X 166386579 to 166386593 14 + TSS region transcription start site region 162682
Ofd1 X 166390033 to 166440704 50671 - protein coding gene OFD1, centriole and centriolar satellite protein
Cpgi23049 X 166440296 to 166441131 835 CpG island CpG island 23049
Tssr164547 X 166440642 to 166440670 28 - TSS region transcription start site region 164547
Tssr164548 X 166440671 to 166440715 44 - TSS region transcription start site region 164548
Trappc2 X 166440736 to 166453140 12404 + protein coding gene trafficking protein particle complex 2
Tssr162683 X 166440738 to 166440781 43 + TSS region transcription start site region 162683
Rab9 X 166457253 to 166479867 22614 - protein coding gene RAB9, member RAS oncogene family
Tssr164549 X 166457872 to 166457901 29 - TSS region transcription start site region 164549
Tssr164550 X 166469839 to 166469851 12 - TSS region transcription start site region 164550
Tssr164551 X 166478628 to 166478653 25 - TSS region transcription start site region 164551
Cpgi23050 X 166479137 to 166479751 614 CpG island CpG island 23050
Tssr164552 X 166479633 to 166479707 74 - TSS region transcription start site region 164552
Gm15229 X 166482265 to 166483602 1337 - pseudogene predicted gene 15229
Tssr164553 X 166483895 to 166483904 9 - TSS region transcription start site region 164553
Tssr164554 X 166483905 to 166483925 20 - TSS region transcription start site region 164554
Gm15223 X 166485602 to 166486427 825 + pseudogene predicted gene 15223
Tssr164555 X 166498857 to 166498873 16 - TSS region transcription start site region 164555
Tssr164556 X 166499007 to 166499020 13 - TSS region transcription start site region 164556
Tceanc X 166499812 to 166518567 18755 - protein coding gene transcription elongation factor A (SII) N-terminal and central domain containing
Tssr162684 X 166510183 to 166510223 40 + TSS region transcription start site region 162684
Cpgi23051 X 166510191 to 166510889 698 CpG island CpG island 23051
Tssr164557 X 166510424 to 166510475 51 - TSS region transcription start site region 164557
DXMit12 X 166515449 to 166515599 150 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 12
Tssr164558 X 166518575 to 166518582 7 - TSS region transcription start site region 164558
Egfl6 X 166523007 to 166585716 62709 - protein coding gene EGF-like-domain, multiple 6
Tssr164559 X 166546509 to 166546514 5 - TSS region transcription start site region 164559
Tssr164560 X 166585593 to 166585605 12 - TSS region transcription start site region 164560
Tssr164561 X 166585614 to 166585625 11 - TSS region transcription start site region 164561
Tssr164562 X 166585640 to 166585653 13 - TSS region transcription start site region 164562
Tssr164563 X 166585679 to 166585737 58 - TSS region transcription start site region 164563
Gm15226 X 166618102 to 166621542 3440 - lincRNA gene predicted gene 15226
Tssr164564 X 166618660 to 166618666 6 - TSS region transcription start site region 164564
Tssr164565 X 166618676 to 166618683 7 - TSS region transcription start site region 164565
Tssr164566 X 166618686 to 166618693 7 - TSS region transcription start site region 164566
Tssr162685 X 166661618 to 166661625 7 + TSS region transcription start site region 162685
Gm1720 X 166662025 to 166689812 27787 + lincRNA gene predicted gene 1720
Tssr162686 X 166663427 to 166663446 19 + TSS region transcription start site region 162686
Tssr162687 X 166674538 to 166674540 2 + TSS region transcription start site region 162687
Gm36547 X 166802175 to 166824521 22346 - lncRNA gene predicted gene, 36547
Gm36867 X 166839965 to 166841005 1040 - lncRNA gene predicted gene, 36867
Gm36918 X 166841656 to 166852490 10834 - lncRNA gene predicted gene, 36918
Rpl7a-ps11 X 166854211 to 166855011 800 + pseudogene ribosomal protein L7A, pseudogene 11
Gm15230 X 166857669 to 166864449 6780 - lincRNA gene predicted gene 15230
Gm30354 X 166868858 to 166884582 15724 - lncRNA gene predicted gene, 30354
n-TSaga3 X 166909733 to 166909814 81 - tRNA gene nuclear encoded tRNA serine 3 (anticodon AGA)
Gm15231 X 166935469 to 166935915 446 + pseudogene predicted gene 15231
Gm44376 X 166957099 to 166957226 127 + miRNA gene predicted gene, 44376
Tssr164567 X 167007990 to 167008018 28 - TSS region transcription start site region 164567
Gm22368 X 167028889 to 167028997 108 - miRNA gene predicted gene, 22368
Gm8814 X 167028902 to 167029436 534 - pseudogene predicted gene 8814
Tssr164568 X 167029648 to 167029652 4 - TSS region transcription start site region 164568
Gm8817 X 167063449 to 167070370 6921 - lincRNA gene predicted gene 8817
Tssr164569 X 167080095 to 167080099 4 - TSS region transcription start site region 164569
Gm15232 X 167088093 to 167102090 13997 - lincRNA gene predicted gene 15232
Tssr162688 X 167089159 to 167089167 8 + TSS region transcription start site region 162688
Tssr164570 X 167091950 to 167091978 28 - TSS region transcription start site region 164570
Tssr164571 X 167102059 to 167102076 17 - TSS region transcription start site region 164571
Gm39549 X 167160158 to 167170088 9930 - lncRNA gene predicted gene, 39549
Gm15228 X 167164097 to 167171278 7181 + lincRNA gene predicted gene 15228
Tssr164572 X 167174355 to 167174368 13 - TSS region transcription start site region 164572
Tssr162689 X 167201584 to 167201620 36 + TSS region transcription start site region 162689
Tssr162690 X 167207093 to 167207096 3 + TSS region transcription start site region 162690
Tmsb4x X 167207093 to 167209315 2222 - protein coding gene thymosin, beta 4, X chromosome
Tssr164573 X 167207149 to 167207163 14 - TSS region transcription start site region 164573
Tssr164574 X 167207207 to 167207232 25 - TSS region transcription start site region 164574
Tssr162691 X 167207215 to 167207270 55 + TSS region transcription start site region 162691
Tssr164575 X 167207242 to 167207255 13 - TSS region transcription start site region 164575
Tssr164576 X 167207282 to 167207294 12 - TSS region transcription start site region 164576
Tssr164577 X 167207330 to 167207343 13 - TSS region transcription start site region 164577
Tssr164578 X 167207412 to 167207537 125 - TSS region transcription start site region 164578
Tssr162692 X 167207441 to 167207474 33 + TSS region transcription start site region 162692
Tssr162693 X 167207484 to 167207514 30 + TSS region transcription start site region 162693
Tssr164579 X 167207750 to 167207771 21 - TSS region transcription start site region 164579
Tssr164580 X 167207959 to 167207967 8 - TSS region transcription start site region 164580
Tssr164581 X 167207971 to 167208063 92 - TSS region transcription start site region 164581
Tssr164582 X 167208565 to 167208615 50 - TSS region transcription start site region 164582
Cpgi23052 X 167209064 to 167209333 269 CpG island CpG island 23052
Tssr164583 X 167209159 to 167209164 5 - TSS region transcription start site region 164583
Tssr164584 X 167209468 to 167209474 6 - TSS region transcription start site region 164584
Tssr164585 X 167210313 to 167210324 11 - TSS region transcription start site region 164585
DXMit160 X 167228266 to 167228408 142 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 160
Tssr164586 X 167229096 to 167229108 12 - TSS region transcription start site region 164586
Tssr164587 X 167229152 to 167229174 22 - TSS region transcription start site region 164587
Tssr164588 X 167241108 to 167241140 32 - TSS region transcription start site region 164588
Tssr164589 X 167241234 to 167241258 24 - TSS region transcription start site region 164589
Tssr164590 X 167241507 to 167241522 15 - TSS region transcription start site region 164590
Tssr164591 X 167241608 to 167241637 29 - TSS region transcription start site region 164591
Tlr8 X 167242696 to 167264329 21633 - protein coding gene toll-like receptor 8
Tssr164592 X 167244083 to 167244105 22 - TSS region transcription start site region 164592
Tssr164593 X 167244864 to 167244882 18 - TSS region transcription start site region 164593
Tssr162694 X 167245493 to 167245516 23 + TSS region transcription start site region 162694
Tssr164594 X 167245723 to 167245746 23 - TSS region transcription start site region 164594
Tssr164595 X 167252554 to 167252566 12 - TSS region transcription start site region 164595
Tssr164596 X 167254622 to 167254625 3 - TSS region transcription start site region 164596
Tssr164597 X 167255139 to 167255142 3 - TSS region transcription start site region 164597
Tssr164598 X 167262851 to 167262865 14 - TSS region transcription start site region 164598
Tssr164599 X 167264217 to 167264266 49 - TSS region transcription start site region 164599
Tssr164600 X 167264280 to 167264291 11 - TSS region transcription start site region 164600
Tssr164601 X 167264293 to 167264304 11 - TSS region transcription start site region 164601