Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:164245449-168095512

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242 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bw3 X 134639291 to 166515599 31876308 QTL body weight QTL 3
Obsty5 X 161429897 to 165366288 3936391 QTL obesity 5
Bmx X 164192842 to 164258193 65351 - protein coding gene BMX non-receptor tyrosine kinase
Tssr164535 X 164246730 to 164246745 15 - TSS region transcription start site region 164535
Tssr164536 X 164250376 to 164250382 6 - TSS region transcription start site region 164536
DXMit122 X 164253196 to 164253315 119 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 122
Tssr164537 X 164258186 to 164258199 13 - TSS region transcription start site region 164537
Tssr164538 X 164258820 to 164258825 5 - TSS region transcription start site region 164538
Gm25367 X 164268071 to 164268176 105 - snRNA gene predicted gene, 25367
Pir X 164269431 to 164373013 103582 + protein coding gene pirin
Cpgi23045 X 164269480 to 164269671 191 CpG island CpG island 23045
Tssr162622 X 164269499 to 164269522 23 + TSS region transcription start site region 162622
Tssr162623 X 164269523 to 164269571 48 + TSS region transcription start site region 162623
Tssr162624 X 164269572 to 164269612 40 + TSS region transcription start site region 162624
Gm46692 X 164275938 to 164276236 298 - pseudogene predicted gene, 46692
Gm22023 X 164283096 to 164283225 129 + snoRNA gene predicted gene, 22023
Tssr162625 X 164373279 to 164373294 15 + TSS region transcription start site region 162625
Tssr162626 X 164373310 to 164373321 11 + TSS region transcription start site region 162626
Tssr162627 X 164373327 to 164373352 25 + TSS region transcription start site region 162627
Tssr162628 X 164373363 to 164373375 12 + TSS region transcription start site region 162628
Vegfd X 164373378 to 164402650 29272 + protein coding gene vascular endothelial growth factor D
Tssr162629 X 164373386 to 164373412 26 + TSS region transcription start site region 162629
Tssr164539 X 164373420 to 164373424 4 - TSS region transcription start site region 164539
Tssr162630 X 164373427 to 164373433 6 + TSS region transcription start site region 162630
Tssr162631 X 164373471 to 164373484 13 + TSS region transcription start site region 162631
Tssr162632 X 164373488 to 164373505 17 + TSS region transcription start site region 162632
Tssr162633 X 164373515 to 164373549 34 + TSS region transcription start site region 162633
Tssr162634 X 164373599 to 164373625 26 + TSS region transcription start site region 162634
Tssr162635 X 164373730 to 164373780 50 + TSS region transcription start site region 162635
Tssr164540 X 164381576 to 164381582 6 - TSS region transcription start site region 164540
Tssr162636 X 164382361 to 164382373 12 + TSS region transcription start site region 162636
Tssr162637 X 164385685 to 164385690 5 + TSS region transcription start site region 162637
Tssr162638 X 164385927 to 164385938 11 + TSS region transcription start site region 162638
Tssr162639 X 164391670 to 164391692 22 + TSS region transcription start site region 162639
Tssr162640 X 164391728 to 164391735 7 + TSS region transcription start site region 162640
Tssr162641 X 164394503 to 164394530 27 + TSS region transcription start site region 162641
Tssr162642 X 164400751 to 164400762 11 + TSS region transcription start site region 162642
Tssr162643 X 164400855 to 164400868 13 + TSS region transcription start site region 162643
Tssr162644 X 164400927 to 164400948 21 + TSS region transcription start site region 162644
Tssr162645 X 164401080 to 164401091 11 + TSS region transcription start site region 162645
Tssr162646 X 164401137 to 164401144 7 + TSS region transcription start site region 162646
Tssr162647 X 164401262 to 164401285 23 + TSS region transcription start site region 162647
Tssr162648 X 164401406 to 164401432 26 + TSS region transcription start site region 162648
Tssr162649 X 164401731 to 164401741 10 + TSS region transcription start site region 162649
Tssr162650 X 164401812 to 164401822 10 + TSS region transcription start site region 162650
Tssr162651 X 164401836 to 164401848 12 + TSS region transcription start site region 162651
Tssr162652 X 164402093 to 164402105 12 + TSS region transcription start site region 162652
Tssr162653 X 164402116 to 164402125 9 + TSS region transcription start site region 162653
Tssr162654 X 164402222 to 164402249 27 + TSS region transcription start site region 162654
Cpgi23046 X 164419470 to 164419983 513 CpG island CpG island 23046
Tssr162655 X 164419782 to 164419824 42 + TSS region transcription start site region 162655
Piga X 164419787 to 164433916 14129 + protein coding gene phosphatidylinositol glycan anchor biosynthesis, class A
Tssr162656 X 164419855 to 164419865 10 + TSS region transcription start site region 162656
Tssr162657 X 164436905 to 164436916 11 + TSS region transcription start site region 162657
Tssr162658 X 164436942 to 164436951 9 + TSS region transcription start site region 162658
Tssr162659 X 164436987 to 164437036 49 + TSS region transcription start site region 162659
Asb11 X 164436994 to 164459170 22176 + protein coding gene ankyrin repeat and SOCS box-containing 11
Tssr162660 X 164438039 to 164438052 13 + TSS region transcription start site region 162660
Tssr5718 X 164438083 to 164438093 10 + TSS region transcription start site region 5718
Tssr162661 X 164438112 to 164438126 14 + TSS region transcription start site region 162661
Tssr162662 X 164442165 to 164442176 11 + TSS region transcription start site region 162662
Tssr162663 X 164442178 to 164442192 14 + TSS region transcription start site region 162663
Gm15211 X 164463216 to 164465882 2666 + pseudogene predicted gene 15211
Tssr162664 X 164506227 to 164506264 37 + TSS region transcription start site region 162664
Tssr162665 X 164506320 to 164506344 24 + TSS region transcription start site region 162665
Asb9 X 164506327 to 164539752 33425 + protein coding gene ankyrin repeat and SOCS box-containing 9
Tssr162666 X 164506348 to 164506370 22 + TSS region transcription start site region 162666
DXMit135 X 164784181 to 164784300 119 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 135
Gm15216 X 164863607 to 164863806 199 + pseudogene predicted gene 15216
Tssr162667 X 164907032 to 164907033 1 + TSS region transcription start site region 162667
Mospd2 X 164936169 to 164980375 44206 - protein coding gene motile sperm domain containing 2
Tssr164541 X 164961091 to 164961098 7 - TSS region transcription start site region 164541
Tssr164542 X 164980279 to 164980309 30 - TSS region transcription start site region 164542
Tssr164543 X 164980310 to 164980355 45 - TSS region transcription start site region 164543
Fancb X 164980592 to 164997272 16680 + protein coding gene Fanconi anemia, complementation group B
Tssr162668 X 164980660 to 164980724 64 + TSS region transcription start site region 162668
Gm17604 X 165003765 to 165004829 1064 - protein coding gene predicted gene, 17604
Gm6730 X 165073116 to 165074432 1316 + pseudogene predicted gene 6730
Glra2 X 165129017 to 165327393 198376 - protein coding gene glycine receptor, alpha 2 subunit
Tssr164544 X 165327097 to 165327125 28 - TSS region transcription start site region 164544
Tssr164545 X 165327376 to 165327421 45 - TSS region transcription start site region 164545
Tssr164546 X 165327427 to 165327459 32 - TSS region transcription start site region 164546
DXMit186 X 165366163 to 165366288 125 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 186
Gm15236 X 165680204 to 165680582 378 + pseudogene predicted gene 15236
Gm22062 X 165717409 to 165717515 106 - snRNA gene predicted gene, 22062
DXMit222 X 165773456 to 165773564 108 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 222
Gm15224 X 166024033 to 166024420 387 - pseudogene predicted gene 15224
Gm15225 X 166062282 to 166070237 7955 + pseudogene predicted gene 15225
Cpgi23047 X 166170240 to 166170644 404 CpG island CpG island 23047
Tssr162669 X 166170449 to 166170512 63 + TSS region transcription start site region 162669
Gemin8 X 166170454 to 166190512 20058 + protein coding gene gem nuclear organelle associated protein 8
Gm15227 X 166205854 to 166206252 398 + pseudogene predicted gene 15227
Tssr5719 X 166217264 to 166217265 1 + TSS region transcription start site region 5719
Tssr162670 X 166238768 to 166238782 14 + TSS region transcription start site region 162670
Tssr162671 X 166238784 to 166238795 11 + TSS region transcription start site region 162671
Tssr162672 X 166238797 to 166238811 14 + TSS region transcription start site region 162672
Cpgi23048 X 166238816 to 166239509 693 CpG island CpG island 23048
Tssr162673 X 166238901 to 166238914 13 + TSS region transcription start site region 162673
Gpm6b X 166238911 to 166388988 150077 + protein coding gene glycoprotein m6b
Tssr162674 X 166238923 to 166239024 101 + TSS region transcription start site region 162674
Tssr162675 X 166239026 to 166239054 28 + TSS region transcription start site region 162675
DXErtd242e X 166254824 to 166255048 224 DNA segment DNA segment, Chr X, ERATO Doi 242, expressed
Tssr162676 X 166344758 to 166344770 12 + TSS region transcription start site region 162676
Tssr162677 X 166344784 to 166344914 130 + TSS region transcription start site region 162677
Tssr162678 X 166344992 to 166345031 39 + TSS region transcription start site region 162678
Tssr162679 X 166346609 to 166346612 3 + TSS region transcription start site region 162679
Tssr162680 X 166357654 to 166357658 4 + TSS region transcription start site region 162680
Tssr162681 X 166372666 to 166372677 11 + TSS region transcription start site region 162681
Tssr162682 X 166386579 to 166386593 14 + TSS region transcription start site region 162682
Ofd1 X 166390033 to 166440704 50671 - protein coding gene OFD1, centriole and centriolar satellite protein
Cpgi23049 X 166440296 to 166441131 835 CpG island CpG island 23049
Tssr164547 X 166440642 to 166440670 28 - TSS region transcription start site region 164547
Tssr164548 X 166440671 to 166440715 44 - TSS region transcription start site region 164548
Trappc2 X 166440736 to 166453140 12404 + protein coding gene trafficking protein particle complex 2
Tssr162683 X 166440738 to 166440781 43 + TSS region transcription start site region 162683
Rab9 X 166457253 to 166479867 22614 - protein coding gene RAB9, member RAS oncogene family
Tssr164549 X 166457872 to 166457901 29 - TSS region transcription start site region 164549
Tssr164550 X 166469839 to 166469851 12 - TSS region transcription start site region 164550
Tssr164551 X 166478628 to 166478653 25 - TSS region transcription start site region 164551
Cpgi23050 X 166479137 to 166479751 614 CpG island CpG island 23050
Tssr164552 X 166479633 to 166479707 74 - TSS region transcription start site region 164552
Gm15229 X 166482265 to 166483602 1337 - pseudogene predicted gene 15229
Tssr164553 X 166483895 to 166483904 9 - TSS region transcription start site region 164553
Tssr164554 X 166483905 to 166483925 20 - TSS region transcription start site region 164554
Gm15223 X 166485602 to 166486427 825 + pseudogene predicted gene 15223
Tssr164555 X 166498857 to 166498873 16 - TSS region transcription start site region 164555
Tssr164556 X 166499007 to 166499020 13 - TSS region transcription start site region 164556
Tceanc X 166499812 to 166518567 18755 - protein coding gene transcription elongation factor A (SII) N-terminal and central domain containing
Tssr162684 X 166510183 to 166510223 40 + TSS region transcription start site region 162684
Cpgi23051 X 166510191 to 166510889 698 CpG island CpG island 23051
Tssr164557 X 166510424 to 166510475 51 - TSS region transcription start site region 164557
DXMit12 X 166515449 to 166515599 150 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 12
Tssr164558 X 166518575 to 166518582 7 - TSS region transcription start site region 164558
Egfl6 X 166523007 to 166585716 62709 - protein coding gene EGF-like-domain, multiple 6
Tssr164559 X 166546509 to 166546514 5 - TSS region transcription start site region 164559
Tssr164560 X 166585593 to 166585605 12 - TSS region transcription start site region 164560
Tssr164561 X 166585614 to 166585625 11 - TSS region transcription start site region 164561
Tssr164562 X 166585640 to 166585653 13 - TSS region transcription start site region 164562
Tssr164563 X 166585679 to 166585737 58 - TSS region transcription start site region 164563
Gm15226 X 166618102 to 166621542 3440 - lincRNA gene predicted gene 15226
Tssr164564 X 166618660 to 166618666 6 - TSS region transcription start site region 164564
Tssr164565 X 166618676 to 166618683 7 - TSS region transcription start site region 164565
Tssr164566 X 166618686 to 166618693 7 - TSS region transcription start site region 164566
Tssr162685 X 166661618 to 166661625 7 + TSS region transcription start site region 162685
Gm1720 X 166662025 to 166689812 27787 + lincRNA gene predicted gene 1720
Tssr162686 X 166663427 to 166663446 19 + TSS region transcription start site region 162686
Tssr162687 X 166674538 to 166674540 2 + TSS region transcription start site region 162687
Gm36547 X 166802175 to 166824521 22346 - lncRNA gene predicted gene, 36547
Gm36867 X 166839965 to 166841005 1040 - lncRNA gene predicted gene, 36867
Gm36918 X 166841656 to 166852490 10834 - lncRNA gene predicted gene, 36918
Rpl7a-ps11 X 166854211 to 166855011 800 + pseudogene ribosomal protein L7A, pseudogene 11
Gm15230 X 166857669 to 166864449 6780 - lincRNA gene predicted gene 15230
Gm30354 X 166868858 to 166884582 15724 - lncRNA gene predicted gene, 30354
n-TSaga3 X 166909733 to 166909814 81 - tRNA gene nuclear encoded tRNA serine 3 (anticodon AGA)
Gm15231 X 166935469 to 166935915 446 + pseudogene predicted gene 15231
Gm44376 X 166957099 to 166957226 127 + miRNA gene predicted gene, 44376
Tssr164567 X 167007990 to 167008018 28 - TSS region transcription start site region 164567
Gm22368 X 167028889 to 167028997 108 - miRNA gene predicted gene, 22368
Gm8814 X 167028902 to 167029436 534 - pseudogene predicted gene 8814
Tssr164568 X 167029648 to 167029652 4 - TSS region transcription start site region 164568
Gm8817 X 167063449 to 167070370 6921 - lincRNA gene predicted gene 8817
Tssr164569 X 167080095 to 167080099 4 - TSS region transcription start site region 164569
Gm15232 X 167088093 to 167102090 13997 - lincRNA gene predicted gene 15232
Tssr162688 X 167089159 to 167089167 8 + TSS region transcription start site region 162688
Tssr164570 X 167091950 to 167091978 28 - TSS region transcription start site region 164570
Tssr164571 X 167102059 to 167102076 17 - TSS region transcription start site region 164571
Gm39549 X 167160158 to 167170088 9930 - lncRNA gene predicted gene, 39549
Gm15228 X 167164097 to 167171278 7181 + lincRNA gene predicted gene 15228
Tssr164572 X 167174355 to 167174368 13 - TSS region transcription start site region 164572
Tssr162689 X 167201584 to 167201620 36 + TSS region transcription start site region 162689
Tssr162690 X 167207093 to 167207096 3 + TSS region transcription start site region 162690
Tmsb4x X 167207093 to 167209315 2222 - protein coding gene thymosin, beta 4, X chromosome
Tssr164573 X 167207149 to 167207163 14 - TSS region transcription start site region 164573
Tssr164574 X 167207207 to 167207232 25 - TSS region transcription start site region 164574
Tssr162691 X 167207215 to 167207270 55 + TSS region transcription start site region 162691
Tssr164575 X 167207242 to 167207255 13 - TSS region transcription start site region 164575
Tssr164576 X 167207282 to 167207294 12 - TSS region transcription start site region 164576
Tssr164577 X 167207330 to 167207343 13 - TSS region transcription start site region 164577
Tssr164578 X 167207412 to 167207537 125 - TSS region transcription start site region 164578
Tssr162692 X 167207441 to 167207474 33 + TSS region transcription start site region 162692
Tssr162693 X 167207484 to 167207514 30 + TSS region transcription start site region 162693
Tssr164579 X 167207750 to 167207771 21 - TSS region transcription start site region 164579
Tssr164580 X 167207959 to 167207967 8 - TSS region transcription start site region 164580
Tssr164581 X 167207971 to 167208063 92 - TSS region transcription start site region 164581
Tssr164582 X 167208565 to 167208615 50 - TSS region transcription start site region 164582
Cpgi23052 X 167209064 to 167209333 269 CpG island CpG island 23052
Tssr164583 X 167209159 to 167209164 5 - TSS region transcription start site region 164583
Tssr164584 X 167209468 to 167209474 6 - TSS region transcription start site region 164584
Tssr164585 X 167210313 to 167210324 11 - TSS region transcription start site region 164585
DXMit160 X 167228266 to 167228408 142 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 160
Tssr164586 X 167229096 to 167229108 12 - TSS region transcription start site region 164586
Tssr164587 X 167229152 to 167229174 22 - TSS region transcription start site region 164587
Tssr164588 X 167241108 to 167241140 32 - TSS region transcription start site region 164588
Tssr164589 X 167241234 to 167241258 24 - TSS region transcription start site region 164589
Tssr164590 X 167241507 to 167241522 15 - TSS region transcription start site region 164590
Tssr164591 X 167241608 to 167241637 29 - TSS region transcription start site region 164591
Tlr8 X 167242696 to 167264329 21633 - protein coding gene toll-like receptor 8
Tssr164592 X 167244083 to 167244105 22 - TSS region transcription start site region 164592
Tssr164593 X 167244864 to 167244882 18 - TSS region transcription start site region 164593
Tssr162694 X 167245493 to 167245516 23 + TSS region transcription start site region 162694