Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:163733634-164183674

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spha3 X 103012242 to 163975945 60963703 QTL sperm head anomaly 3
Rnf138rt1 X 163760139 to 163761329 1190 - protein coding gene ring finger protein 138, retrogene 1
Cpgi23041 X 163760855 to 163761201 346 CpG island CpG island 23041
Tssr164519 X 163761293 to 163761315 22 - TSS region transcription start site region 164519
Tssr164520 X 163761323 to 163761344 21 - TSS region transcription start site region 164520
DXMit236 X 163766177 to 163766338 161 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 236
Gm15213 X 163778229 to 163778444 215 - pseudogene predicted gene 15213
Gm20188 X 163826859 to 163827232 373 - pseudogene predicted gene, 20188
Tssr164521 X 163885476 to 163885484 8 - TSS region transcription start site region 164521
Cpgi23042 X 163908460 to 163909728 1268 CpG island CpG island 23042
Tssr162593 X 163908982 to 163908993 11 + TSS region transcription start site region 162593
Ap1s2 X 163909017 to 163933666 24649 + protein coding gene adaptor-related protein complex 1, sigma 2 subunit
Tssr162594 X 163909098 to 163909099 1 + TSS region transcription start site region 162594
Tssr162595 X 163909106 to 163909128 22 + TSS region transcription start site region 162595
Tssr162596 X 163909132 to 163909169 37 + TSS region transcription start site region 162596
Tssr162597 X 163909175 to 163909184 9 + TSS region transcription start site region 162597
Tssr162598 X 163909203 to 163909210 7 + TSS region transcription start site region 162598
Tssr162599 X 163909597 to 163909606 9 + TSS region transcription start site region 162599
Tssr162600 X 163911425 to 163911439 14 + TSS region transcription start site region 162600
Tssr162601 X 163921246 to 163921250 4 + TSS region transcription start site region 162601
9230113A04Rik X 163925976 to 163926554 578 unclassified gene RIKEN cDNA 9230113A04 gene
Tssr162602 X 163927633 to 163927668 35 + TSS region transcription start site region 162602
Tssr162603 X 163927721 to 163927733 12 + TSS region transcription start site region 162603
Zrsr2 X 163935443 to 163958661 23218 - protein coding gene zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2
Cpgi23043 X 163957653 to 163958644 991 CpG island CpG island 23043
Tssr164522 X 163958086 to 163958132 46 - TSS region transcription start site region 164522
Tssr162604 X 163958239 to 163958312 73 + TSS region transcription start site region 162604
Tssr164523 X 163958563 to 163958588 25 - TSS region transcription start site region 164523
Tssr164524 X 163958590 to 163958597 7 - TSS region transcription start site region 164524
Tssr164525 X 163958602 to 163958618 16 - TSS region transcription start site region 164525
Tssr164526 X 163958634 to 163958674 40 - TSS region transcription start site region 164526
Tssr162605 X 163958744 to 163958797 53 + TSS region transcription start site region 162605
Gm38561 X 163975332 to 163983833 8501 + lncRNA gene predicted gene, 38561
DXMit249 X 163975834 to 163975945 111 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 249
Car5b X 163976822 to 164027997 51175 - protein coding gene carbonic anhydrase 5b, mitochondrial
Tssr164527 X 164021898 to 164021942 44 - TSS region transcription start site region 164527
Tssr164528 X 164027965 to 164027994 29 - TSS region transcription start site region 164528
Tssr164529 X 164028000 to 164028029 29 - TSS region transcription start site region 164529
Tssr164530 X 164042326 to 164042340 14 - TSS region transcription start site region 164530
Siah1b X 164070705 to 164076493 5788 - protein coding gene siah E3 ubiquitin protein ligase 1B
Cpgi23044 X 164075970 to 164076674 704 CpG island CpG island 23044
Tssr164531 X 164076100 to 164076129 29 - TSS region transcription start site region 164531
Tssr5717 X 164076130 to 164076166 36 - TSS region transcription start site region 5717
Tssr164532 X 164076446 to 164076462 16 - TSS region transcription start site region 164532
Tssr164533 X 164076482 to 164076511 29 - TSS region transcription start site region 164533
Cltrn X 164090187 to 164118859 28672 + protein coding gene collectrin, amino acid transport regulator
Tssr162606 X 164090188 to 164090201 13 + TSS region transcription start site region 162606
Tssr162607 X 164090236 to 164090249 13 + TSS region transcription start site region 162607
Tssr162608 X 164118325 to 164118342 17 + TSS region transcription start site region 162608
Tssr162609 X 164120017 to 164120020 3 + TSS region transcription start site region 162609
n-R5s18 X 164133385 to 164133505 120 + rRNA gene nuclear encoded rRNA 5S 18
Tssr162610 X 164139321 to 164139337 16 + TSS region transcription start site region 162610
Ace2 X 164139342 to 164188418 49076 + protein coding gene angiotensin I converting enzyme (peptidyl-dipeptidase A) 2
Tssr162611 X 164139350 to 164139369 19 + TSS region transcription start site region 162611
Tssr162612 X 164139370 to 164139397 27 + TSS region transcription start site region 162612
Tssr162613 X 164140447 to 164140495 48 + TSS region transcription start site region 162613
Tssr162614 X 164140546 to 164140562 16 + TSS region transcription start site region 162614
Tssr162615 X 164140595 to 164140639 44 + TSS region transcription start site region 162615
Tssr162616 X 164140654 to 164140659 5 + TSS region transcription start site region 162616
Tssr162617 X 164157920 to 164157934 14 + TSS region transcription start site region 162617
Tssr162618 X 164162134 to 164162153 19 + TSS region transcription start site region 162618
Tssr162619 X 164162167 to 164162194 27 + TSS region transcription start site region 162619
Tssr162620 X 164162212 to 164162224 12 + TSS region transcription start site region 162620