Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:163655927-165145948

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144 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spha3 X 103012242 to 163975945 60963703 QTL sperm head anomaly 3
DXMit15 X 163693753 to 163693860 107 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 15
Rnf138rt1 X 163760139 to 163761329 1190 - protein coding gene ring finger protein 138, retrogene 1
Cpgi23041 X 163760855 to 163761201 346 CpG island CpG island 23041
Tssr164519 X 163761293 to 163761315 22 - TSS region transcription start site region 164519
Tssr164520 X 163761323 to 163761344 21 - TSS region transcription start site region 164520
DXMit236 X 163766177 to 163766338 161 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 236
Gm15213 X 163778229 to 163778444 215 - pseudogene predicted gene 15213
Gm20188 X 163826859 to 163827232 373 - pseudogene predicted gene, 20188
Tssr164521 X 163885476 to 163885484 8 - TSS region transcription start site region 164521
Cpgi23042 X 163908460 to 163909728 1268 CpG island CpG island 23042
Tssr162593 X 163908982 to 163908993 11 + TSS region transcription start site region 162593
Ap1s2 X 163909017 to 163933666 24649 + protein coding gene adaptor-related protein complex 1, sigma 2 subunit
Tssr162594 X 163909098 to 163909099 1 + TSS region transcription start site region 162594
Tssr162595 X 163909106 to 163909128 22 + TSS region transcription start site region 162595
Tssr162596 X 163909132 to 163909169 37 + TSS region transcription start site region 162596
Tssr162597 X 163909175 to 163909184 9 + TSS region transcription start site region 162597
Tssr162598 X 163909203 to 163909210 7 + TSS region transcription start site region 162598
Tssr162599 X 163909597 to 163909606 9 + TSS region transcription start site region 162599
Tssr162600 X 163911425 to 163911439 14 + TSS region transcription start site region 162600
Tssr162601 X 163921246 to 163921250 4 + TSS region transcription start site region 162601
9230113A04Rik X 163925976 to 163926554 578 unclassified gene RIKEN cDNA 9230113A04 gene
Tssr162602 X 163927633 to 163927668 35 + TSS region transcription start site region 162602
Tssr162603 X 163927721 to 163927733 12 + TSS region transcription start site region 162603
Zrsr2 X 163935443 to 163958661 23218 - protein coding gene zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2
Cpgi23043 X 163957653 to 163958644 991 CpG island CpG island 23043
Tssr164522 X 163958086 to 163958132 46 - TSS region transcription start site region 164522
Tssr162604 X 163958239 to 163958312 73 + TSS region transcription start site region 162604
Tssr164523 X 163958563 to 163958588 25 - TSS region transcription start site region 164523
Tssr164524 X 163958590 to 163958597 7 - TSS region transcription start site region 164524
Tssr164525 X 163958602 to 163958618 16 - TSS region transcription start site region 164525
Tssr164526 X 163958634 to 163958674 40 - TSS region transcription start site region 164526
Tssr162605 X 163958744 to 163958797 53 + TSS region transcription start site region 162605
Gm38561 X 163975332 to 163983833 8501 + lncRNA gene predicted gene, 38561
DXMit249 X 163975834 to 163975945 111 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 249
Car5b X 163976822 to 164027997 51175 - protein coding gene carbonic anhydrase 5b, mitochondrial
Tssr164527 X 164021898 to 164021942 44 - TSS region transcription start site region 164527
Tssr164528 X 164027965 to 164027994 29 - TSS region transcription start site region 164528
Tssr164529 X 164028000 to 164028029 29 - TSS region transcription start site region 164529
Tssr164530 X 164042326 to 164042340 14 - TSS region transcription start site region 164530
Siah1b X 164070705 to 164076493 5788 - protein coding gene siah E3 ubiquitin protein ligase 1B
Cpgi23044 X 164075970 to 164076674 704 CpG island CpG island 23044
Tssr164531 X 164076100 to 164076129 29 - TSS region transcription start site region 164531
Tssr5717 X 164076130 to 164076166 36 - TSS region transcription start site region 5717
Tssr164532 X 164076446 to 164076462 16 - TSS region transcription start site region 164532
Tssr164533 X 164076482 to 164076511 29 - TSS region transcription start site region 164533
Cltrn X 164090187 to 164118859 28672 + protein coding gene collectrin, amino acid transport regulator
Tssr162606 X 164090188 to 164090201 13 + TSS region transcription start site region 162606
Tssr162607 X 164090236 to 164090249 13 + TSS region transcription start site region 162607
Tssr162608 X 164118325 to 164118342 17 + TSS region transcription start site region 162608
Tssr162609 X 164120017 to 164120020 3 + TSS region transcription start site region 162609
n-R5s18 X 164133385 to 164133505 120 + rRNA gene nuclear encoded rRNA 5S 18
Tssr162610 X 164139321 to 164139337 16 + TSS region transcription start site region 162610
Ace2 X 164139342 to 164188418 49076 + protein coding gene angiotensin I converting enzyme (peptidyl-dipeptidase A) 2
Tssr162611 X 164139350 to 164139369 19 + TSS region transcription start site region 162611
Tssr162612 X 164139370 to 164139397 27 + TSS region transcription start site region 162612
Tssr162613 X 164140447 to 164140495 48 + TSS region transcription start site region 162613
Tssr162614 X 164140546 to 164140562 16 + TSS region transcription start site region 162614
Tssr162615 X 164140595 to 164140639 44 + TSS region transcription start site region 162615
Tssr162616 X 164140654 to 164140659 5 + TSS region transcription start site region 162616
Tssr162617 X 164157920 to 164157934 14 + TSS region transcription start site region 162617
Tssr162618 X 164162134 to 164162153 19 + TSS region transcription start site region 162618
Tssr162619 X 164162167 to 164162194 27 + TSS region transcription start site region 162619
Tssr162620 X 164162212 to 164162224 12 + TSS region transcription start site region 162620
Bmx X 164192842 to 164258193 65351 - protein coding gene BMX non-receptor tyrosine kinase
Tssr162621 X 164200812 to 164200837 25 + TSS region transcription start site region 162621
Gm19251 X 164220971 to 164225305 4334 + pseudogene predicted gene, 19251
Tssr164534 X 164229176 to 164229178 2 - TSS region transcription start site region 164534
Tssr164535 X 164246730 to 164246745 15 - TSS region transcription start site region 164535
Tssr164536 X 164250376 to 164250382 6 - TSS region transcription start site region 164536
DXMit122 X 164253196 to 164253315 119 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 122
Tssr164537 X 164258186 to 164258199 13 - TSS region transcription start site region 164537
Tssr164538 X 164258820 to 164258825 5 - TSS region transcription start site region 164538
Gm25367 X 164268071 to 164268176 105 - snRNA gene predicted gene, 25367
Pir X 164269431 to 164373013 103582 + protein coding gene pirin
Cpgi23045 X 164269480 to 164269671 191 CpG island CpG island 23045
Tssr162622 X 164269499 to 164269522 23 + TSS region transcription start site region 162622
Tssr162623 X 164269523 to 164269571 48 + TSS region transcription start site region 162623
Tssr162624 X 164269572 to 164269612 40 + TSS region transcription start site region 162624
Gm46692 X 164275938 to 164276236 298 - pseudogene predicted gene, 46692
Gm22023 X 164283096 to 164283225 129 + snoRNA gene predicted gene, 22023
Tssr162625 X 164373279 to 164373294 15 + TSS region transcription start site region 162625
Tssr162626 X 164373310 to 164373321 11 + TSS region transcription start site region 162626
Tssr162627 X 164373327 to 164373352 25 + TSS region transcription start site region 162627
Tssr162628 X 164373363 to 164373375 12 + TSS region transcription start site region 162628
Vegfd X 164373378 to 164402650 29272 + protein coding gene vascular endothelial growth factor D
Tssr162629 X 164373386 to 164373412 26 + TSS region transcription start site region 162629
Tssr164539 X 164373420 to 164373424 4 - TSS region transcription start site region 164539
Tssr162630 X 164373427 to 164373433 6 + TSS region transcription start site region 162630
Tssr162631 X 164373471 to 164373484 13 + TSS region transcription start site region 162631
Tssr162632 X 164373488 to 164373505 17 + TSS region transcription start site region 162632
Tssr162633 X 164373515 to 164373549 34 + TSS region transcription start site region 162633
Tssr162634 X 164373599 to 164373625 26 + TSS region transcription start site region 162634
Tssr162635 X 164373730 to 164373780 50 + TSS region transcription start site region 162635
Tssr164540 X 164381576 to 164381582 6 - TSS region transcription start site region 164540
Tssr162636 X 164382361 to 164382373 12 + TSS region transcription start site region 162636
Tssr162637 X 164385685 to 164385690 5 + TSS region transcription start site region 162637
Tssr162638 X 164385927 to 164385938 11 + TSS region transcription start site region 162638
Tssr162639 X 164391670 to 164391692 22 + TSS region transcription start site region 162639
Tssr162640 X 164391728 to 164391735 7 + TSS region transcription start site region 162640
Tssr162641 X 164394503 to 164394530 27 + TSS region transcription start site region 162641
Tssr162642 X 164400751 to 164400762 11 + TSS region transcription start site region 162642
Tssr162643 X 164400855 to 164400868 13 + TSS region transcription start site region 162643
Tssr162644 X 164400927 to 164400948 21 + TSS region transcription start site region 162644
Tssr162645 X 164401080 to 164401091 11 + TSS region transcription start site region 162645
Tssr162646 X 164401137 to 164401144 7 + TSS region transcription start site region 162646
Tssr162647 X 164401262 to 164401285 23 + TSS region transcription start site region 162647
Tssr162648 X 164401406 to 164401432 26 + TSS region transcription start site region 162648
Tssr162649 X 164401731 to 164401741 10 + TSS region transcription start site region 162649
Tssr162650 X 164401812 to 164401822 10 + TSS region transcription start site region 162650
Tssr162651 X 164401836 to 164401848 12 + TSS region transcription start site region 162651
Tssr162652 X 164402093 to 164402105 12 + TSS region transcription start site region 162652
Tssr162653 X 164402116 to 164402125 9 + TSS region transcription start site region 162653
Tssr162654 X 164402222 to 164402249 27 + TSS region transcription start site region 162654
Cpgi23046 X 164419470 to 164419983 513 CpG island CpG island 23046
Tssr162655 X 164419782 to 164419824 42 + TSS region transcription start site region 162655
Piga X 164419787 to 164433916 14129 + protein coding gene phosphatidylinositol glycan anchor biosynthesis, class A
Tssr162656 X 164419855 to 164419865 10 + TSS region transcription start site region 162656
Tssr162657 X 164436905 to 164436916 11 + TSS region transcription start site region 162657
Tssr162658 X 164436942 to 164436951 9 + TSS region transcription start site region 162658
Tssr162659 X 164436987 to 164437036 49 + TSS region transcription start site region 162659
Asb11 X 164436994 to 164459170 22176 + protein coding gene ankyrin repeat and SOCS box-containing 11
Tssr162660 X 164438039 to 164438052 13 + TSS region transcription start site region 162660
Tssr5718 X 164438083 to 164438093 10 + TSS region transcription start site region 5718
Tssr162661 X 164438112 to 164438126 14 + TSS region transcription start site region 162661
Tssr162662 X 164442165 to 164442176 11 + TSS region transcription start site region 162662
Tssr162663 X 164442178 to 164442192 14 + TSS region transcription start site region 162663
Gm15211 X 164463216 to 164465882 2666 + pseudogene predicted gene 15211
Tssr162664 X 164506227 to 164506264 37 + TSS region transcription start site region 162664
Tssr162665 X 164506320 to 164506344 24 + TSS region transcription start site region 162665
Asb9 X 164506327 to 164539752 33425 + protein coding gene ankyrin repeat and SOCS box-containing 9
Tssr162666 X 164506348 to 164506370 22 + TSS region transcription start site region 162666
DXMit135 X 164784181 to 164784300 119 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 135
Gm15216 X 164863607 to 164863806 199 + pseudogene predicted gene 15216
Tssr162667 X 164907032 to 164907033 1 + TSS region transcription start site region 162667
Mospd2 X 164936169 to 164980375 44206 - protein coding gene motile sperm domain containing 2
Tssr164541 X 164961091 to 164961098 7 - TSS region transcription start site region 164541
Tssr164542 X 164980279 to 164980309 30 - TSS region transcription start site region 164542
Tssr164543 X 164980310 to 164980355 45 - TSS region transcription start site region 164543
Fancb X 164980592 to 164997272 16680 + protein coding gene Fanconi anemia, complementation group B
Tssr162668 X 164980660 to 164980724 64 + TSS region transcription start site region 162668
Gm17604 X 165003765 to 165004829 1064 - protein coding gene predicted gene, 17604
Gm6730 X 165073116 to 165074432 1316 + pseudogene predicted gene 6730
Glra2 X 165129017 to 165327393 198376 - protein coding gene glycine receptor, alpha 2 subunit