Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:162874384-164224527

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spha3 X 103012242 to 163975945 60963703 QTL sperm head anomaly 3
Li X 159644928 to 163549527 3904599 heritable phenotypic marker lined
Syap1 X 162857057 to 162888447 31390 - protein coding gene synapse associated protein 1
Mir3473a X 162874918 to 162874995 77 - miRNA gene microRNA 3473a
Cpgi23039 X 162887944 to 162888513 569 CpG island CpG island 23039
Tssr164514 X 162888374 to 162888401 27 - TSS region transcription start site region 164514
Tssr164515 X 162888412 to 162888423 11 - TSS region transcription start site region 164515
Tssr164516 X 162888426 to 162888473 47 - TSS region transcription start site region 164516
Gm15209 X 162894755 to 162895154 399 - pseudogene predicted gene 15209
Tssr162588 X 162901226 to 162901261 35 + TSS region transcription start site region 162588
Ctps2 X 162901238 to 163032508 131270 + protein coding gene cytidine 5'-triphosphate synthase 2
Tssr162589 X 162901567 to 162901677 110 + TSS region transcription start site region 162589
Cpgi23040 X 162901677 to 162901882 205 CpG island CpG island 23040
Tssr162590 X 162901679 to 162901693 14 + TSS region transcription start site region 162590
Tssr162591 X 162901694 to 162901733 39 + TSS region transcription start site region 162591
Tssr162592 X 162901762 to 162901773 11 + TSS region transcription start site region 162592
Gm19107 X 162908021 to 162908929 908 - pseudogene predicted gene, 19107
DXMit182 X 162948861 to 162948977 116 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 182
S100g X 162961992 to 162964599 2607 - protein coding gene S100 calcium binding protein G
Tssr164517 X 162964228 to 162964237 9 - TSS region transcription start site region 164517
Tssr164518 X 162964557 to 162964576 19 - TSS region transcription start site region 164518
Gm23501 X 163069614 to 163069869 255 - unclassified non-coding RNA gene predicted gene, 23501
Gm22746 X 163150391 to 163150497 106 - snRNA gene predicted gene, 22746
Gm15215 X 163208312 to 163208800 488 - pseudogene predicted gene 15215
Gm15212 X 163272912 to 163273377 465 + pseudogene predicted gene 15212
DXMit156 X 163318923 to 163319049 126 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 156
Gm15214 X 163326900 to 163327369 469 - pseudogene predicted gene 15214
DXMit157 X 163385220 to 163385360 140 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 157
Gm26007 X 163388772 to 163388891 119 - snRNA gene predicted gene, 26007
Gm7199 X 163477652 to 163479136 1484 + pseudogene predicted gene 7199
Grpr X 163513904 to 163549677 35773 - protein coding gene gastrin releasing peptide receptor
DXMit21 X 163549357 to 163549527 170 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 21
DXMit20 X 163549384 to 163549527 143 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 20
DXMit15 X 163693753 to 163693860 107 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 15
Rnf138rt1 X 163760139 to 163761329 1190 - protein coding gene ring finger protein 138, retrogene 1
Cpgi23041 X 163760855 to 163761201 346 CpG island CpG island 23041
Tssr164519 X 163761293 to 163761315 22 - TSS region transcription start site region 164519
Tssr164520 X 163761323 to 163761344 21 - TSS region transcription start site region 164520
DXMit236 X 163766177 to 163766338 161 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 236
Gm15213 X 163778229 to 163778444 215 - pseudogene predicted gene 15213
Gm20188 X 163826859 to 163827232 373 - pseudogene predicted gene, 20188
Tssr164521 X 163885476 to 163885484 8 - TSS region transcription start site region 164521
Cpgi23042 X 163908460 to 163909728 1268 CpG island CpG island 23042
Tssr162593 X 163908982 to 163908993 11 + TSS region transcription start site region 162593
Ap1s2 X 163909017 to 163933666 24649 + protein coding gene adaptor-related protein complex 1, sigma 2 subunit
Tssr162594 X 163909098 to 163909099 1 + TSS region transcription start site region 162594
Tssr162595 X 163909106 to 163909128 22 + TSS region transcription start site region 162595
Tssr162596 X 163909132 to 163909169 37 + TSS region transcription start site region 162596
Tssr162597 X 163909175 to 163909184 9 + TSS region transcription start site region 162597
Tssr162598 X 163909203 to 163909210 7 + TSS region transcription start site region 162598
Tssr162599 X 163909597 to 163909606 9 + TSS region transcription start site region 162599
Tssr162600 X 163911425 to 163911439 14 + TSS region transcription start site region 162600
Tssr162601 X 163921246 to 163921250 4 + TSS region transcription start site region 162601
9230113A04Rik X 163925976 to 163926554 578 unclassified gene RIKEN cDNA 9230113A04 gene
Tssr162602 X 163927633 to 163927668 35 + TSS region transcription start site region 162602
Tssr162603 X 163927721 to 163927733 12 + TSS region transcription start site region 162603
Zrsr2 X 163935443 to 163958661 23218 - protein coding gene zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2
Cpgi23043 X 163957653 to 163958644 991 CpG island CpG island 23043
Tssr164522 X 163958086 to 163958132 46 - TSS region transcription start site region 164522
Tssr162604 X 163958239 to 163958312 73 + TSS region transcription start site region 162604
Tssr164523 X 163958563 to 163958588 25 - TSS region transcription start site region 164523
Tssr164524 X 163958590 to 163958597 7 - TSS region transcription start site region 164524
Tssr164525 X 163958602 to 163958618 16 - TSS region transcription start site region 164525
Tssr164526 X 163958634 to 163958674 40 - TSS region transcription start site region 164526
Tssr162605 X 163958744 to 163958797 53 + TSS region transcription start site region 162605
Gm38561 X 163975332 to 163983833 8501 + lncRNA gene predicted gene, 38561
DXMit249 X 163975834 to 163975945 111 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 249
Car5b X 163976822 to 164027997 51175 - protein coding gene carbonic anhydrase 5b, mitochondrial
Tssr164527 X 164021898 to 164021942 44 - TSS region transcription start site region 164527
Tssr164528 X 164027965 to 164027994 29 - TSS region transcription start site region 164528
Tssr164529 X 164028000 to 164028029 29 - TSS region transcription start site region 164529
Tssr164530 X 164042326 to 164042340 14 - TSS region transcription start site region 164530
Siah1b X 164070705 to 164076493 5788 - protein coding gene siah E3 ubiquitin protein ligase 1B
Cpgi23044 X 164075970 to 164076674 704 CpG island CpG island 23044
Tssr164531 X 164076100 to 164076129 29 - TSS region transcription start site region 164531
Tssr5717 X 164076130 to 164076166 36 - TSS region transcription start site region 5717
Tssr164532 X 164076446 to 164076462 16 - TSS region transcription start site region 164532
Tssr164533 X 164076482 to 164076511 29 - TSS region transcription start site region 164533
Cltrn X 164090187 to 164118859 28672 + protein coding gene collectrin, amino acid transport regulator
Tssr162606 X 164090188 to 164090201 13 + TSS region transcription start site region 162606
Tssr162607 X 164090236 to 164090249 13 + TSS region transcription start site region 162607
Tssr162608 X 164118325 to 164118342 17 + TSS region transcription start site region 162608
Tssr162609 X 164120017 to 164120020 3 + TSS region transcription start site region 162609
n-R5s18 X 164133385 to 164133505 120 + rRNA gene nuclear encoded rRNA 5S 18
Tssr162610 X 164139321 to 164139337 16 + TSS region transcription start site region 162610
Ace2 X 164139342 to 164188418 49076 + protein coding gene angiotensin I converting enzyme (peptidyl-dipeptidase A) 2
Tssr162611 X 164139350 to 164139369 19 + TSS region transcription start site region 162611
Tssr162612 X 164139370 to 164139397 27 + TSS region transcription start site region 162612
Tssr162613 X 164140447 to 164140495 48 + TSS region transcription start site region 162613
Tssr162614 X 164140546 to 164140562 16 + TSS region transcription start site region 162614
Tssr162615 X 164140595 to 164140639 44 + TSS region transcription start site region 162615
Tssr162616 X 164140654 to 164140659 5 + TSS region transcription start site region 162616
Tssr162617 X 164157920 to 164157934 14 + TSS region transcription start site region 162617
Tssr162618 X 164162134 to 164162153 19 + TSS region transcription start site region 162618
Tssr162619 X 164162167 to 164162194 27 + TSS region transcription start site region 162619
Tssr162620 X 164162212 to 164162224 12 + TSS region transcription start site region 162620
Bmx X 164192842 to 164258193 65351 - protein coding gene BMX non-receptor tyrosine kinase
Tssr162621 X 164200812 to 164200837 25 + TSS region transcription start site region 162621
Gm19251 X 164220971 to 164225305 4334 + pseudogene predicted gene, 19251