Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:161424897-165371288

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259 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spha3 X 103012242 to 163975945 60963703 QTL sperm head anomaly 3
Cia19 X 122083468 to 161430042 39346574 QTL collagen induced arthritis QTL 19
Li X 159644928 to 163549527 3904599 heritable phenotypic marker lined
DXMit121.1 X 161429749 to 161429897 148 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 121.1
DXMit121 X 161429897 to 161430042 145 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 121
Obsty5 X 161429897 to 165366288 3936391 QTL obesity 5
Prkaca-ps1 X 161485567 to 161486485 918 - pseudogene protein kinase, cAMP dependent, catalytic, alpha pseudogene 1
Cpgi23033 X 161716734 to 161717942 1208 CpG island CpG island 23033
Tssr162574 X 161717025 to 161717039 14 + TSS region transcription start site region 162574
Tssr162575 X 161717055 to 161717073 18 + TSS region transcription start site region 162575
Rai2 X 161717069 to 161779496 62427 + protein coding gene retinoic acid induced 2
Tssr162576 X 161717461 to 161717496 35 + TSS region transcription start site region 162576
Tssr162577 X 161717498 to 161717519 21 + TSS region transcription start site region 162577
Tssr5716 X 161717641 to 161717657 16 + TSS region transcription start site region 5716
Tssr164489 X 161777847 to 161777855 8 - TSS region transcription start site region 164489
Tssr162578 X 161777941 to 161777959 18 + TSS region transcription start site region 162578
Scml1 X 161817734 to 161819587 1853 - lincRNA gene Scm polycomb group protein like 1
Gm15205 X 161821366 to 161832112 10746 - lincRNA gene predicted gene 15205
Tssr164490 X 161832116 to 161832127 11 - TSS region transcription start site region 164490
Nhs X 161833290 to 162159441 326151 - protein coding gene NHS actin remodeling regulator
Cpgi23034 X 161908071 to 161909392 1321 CpG island CpG island 23034
Gm15202 X 161908223 to 161908777 554 + antisense lncRNA gene predicted gene 15202
DXMit32 X 161975838 to 161975954 116 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 32
Tssr164491 X 162018855 to 162018887 32 - TSS region transcription start site region 164491
Tssr164492 X 162018961 to 162018975 14 - TSS region transcription start site region 164492
Tssr164493 X 162019460 to 162019470 10 - TSS region transcription start site region 164493
Gm26317 X 162069457 to 162069563 106 + snRNA gene predicted gene, 26317
Tssr164494 X 162069465 to 162069469 4 - TSS region transcription start site region 164494
Tssr164495 X 162072418 to 162072423 5 - TSS region transcription start site region 164495
Tssr164496 X 162085384 to 162085388 4 - TSS region transcription start site region 164496
Gm23794 X 162114238 to 162114341 103 + snRNA gene predicted gene, 23794
Tssr164497 X 162122661 to 162122663 2 - TSS region transcription start site region 164497
Tssr164498 X 162125824 to 162125870 46 - TSS region transcription start site region 164498
Cpgi23035 X 162158692 to 162160454 1762 CpG island CpG island 23035
Tssr164499 X 162159717 to 162159732 15 - TSS region transcription start site region 164499
Tssr164500 X 162159929 to 162160009 80 - TSS region transcription start site region 164500
Gm27490 X 162237099 to 162237226 127 + rRNA gene predicted gene, 27490
Gm23867 X 162305029 to 162305302 273 - unclassified non-coding RNA gene predicted gene, 23867
Gm15204 X 162351596 to 162353876 2280 + pseudogene predicted gene 15204
Tssr164501 X 162375467 to 162375472 5 - TSS region transcription start site region 164501
Reps2 X 162411954 to 162643649 231695 - protein coding gene RALBP1 associated Eps domain containing protein 2
Tssr164502 X 162415246 to 162415261 15 - TSS region transcription start site region 164502
Tssr164503 X 162415281 to 162415304 23 - TSS region transcription start site region 164503
Tssr162579 X 162500330 to 162500365 35 + TSS region transcription start site region 162579
Tssr162580 X 162500378 to 162500397 19 + TSS region transcription start site region 162580
Tssr162581 X 162500431 to 162500446 15 + TSS region transcription start site region 162581
Tssr164504 X 162531116 to 162531121 5 - TSS region transcription start site region 164504
Tssr164505 X 162552573 to 162552612 39 - TSS region transcription start site region 164505
Tssr164506 X 162552740 to 162552757 17 - TSS region transcription start site region 164506
Tssr164507 X 162565606 to 162565617 11 - TSS region transcription start site region 164507
Tssr162582 X 162566809 to 162566818 9 + TSS region transcription start site region 162582
Gm7331 X 162566857 to 162567243 386 + pseudogene predicted gene 7331
Gm15206 X 162576618 to 162577071 453 - pseudogene predicted gene 15206
Tssr162583 X 162638087 to 162638093 6 + TSS region transcription start site region 162583
Cpgi23036 X 162643209 to 162643985 776 CpG island CpG island 23036
Tssr164508 X 162643463 to 162643474 11 - TSS region transcription start site region 164508
Tssr164509 X 162643546 to 162643573 27 - TSS region transcription start site region 164509
Tssr164510 X 162643575 to 162643622 47 - TSS region transcription start site region 164510
Tssr164511 X 162643629 to 162643665 36 - TSS region transcription start site region 164511
Gm15203 X 162679007 to 162679461 454 + pseudogene predicted gene 15203
Gm22257 X 162687880 to 162688180 300 + unclassified non-coding RNA gene predicted gene, 22257
DXMit5 X 162691384 to 162691533 149 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 5
Pgia39 X 162691384 to 162691533 149 QTL proteoglycan induced arthritis 39
Pgia25 X 162691384 to 162691533 149 QTL proteoglycan induced arthritis 25
Gm25557 X 162693249 to 162693563 314 + unclassified non-coding RNA gene predicted gene, 25557
Gm8737 X 162697612 to 162698250 638 + pseudogene predicted gene 8737
Gm15201 X 162735078 to 162736613 1535 - lncRNA gene predicted gene 15201
Gm23786 X 162748556 to 162748674 118 + snoRNA gene predicted gene, 23786
Cpgi23037 X 162759923 to 162761431 1508 CpG island CpG island 23037
Tssr162584 X 162760367 to 162760378 11 + TSS region transcription start site region 162584
Tssr162585 X 162760388 to 162760415 27 + TSS region transcription start site region 162585
Rbbp7 X 162760402 to 162779092 18690 + protein coding gene retinoblastoma binding protein 7, chromatin remodeling factor
Tssr162586 X 162760427 to 162760488 61 + TSS region transcription start site region 162586
Txlng X 162778919 to 162829454 50535 - protein coding gene taxilin gamma
Cpgi23038 X 162828595 to 162829682 1087 CpG island CpG island 23038
Tssr164512 X 162829338 to 162829373 35 - TSS region transcription start site region 164512
Tssr164513 X 162829379 to 162829402 23 - TSS region transcription start site region 164513
Gm16459 X 162844870 to 162845523 653 + pseudogene predicted gene 16459
Gm15207 X 162845825 to 162846266 441 - pseudogene predicted gene 15207
Tssr162587 X 162846004 to 162846016 12 + TSS region transcription start site region 162587
Gm23901 X 162850158 to 162850264 106 - snRNA gene predicted gene, 23901
Syap1 X 162857057 to 162888447 31390 - protein coding gene synapse associated protein 1
Mir3473a X 162874918 to 162874995 77 - miRNA gene microRNA 3473a
Cpgi23039 X 162887944 to 162888513 569 CpG island CpG island 23039
Tssr164514 X 162888374 to 162888401 27 - TSS region transcription start site region 164514
Tssr164515 X 162888412 to 162888423 11 - TSS region transcription start site region 164515
Tssr164516 X 162888426 to 162888473 47 - TSS region transcription start site region 164516
Gm15209 X 162894755 to 162895154 399 - pseudogene predicted gene 15209
Tssr162588 X 162901226 to 162901261 35 + TSS region transcription start site region 162588
Ctps2 X 162901238 to 163032508 131270 + protein coding gene cytidine 5'-triphosphate synthase 2
Tssr162589 X 162901567 to 162901677 110 + TSS region transcription start site region 162589
Cpgi23040 X 162901677 to 162901882 205 CpG island CpG island 23040
Tssr162590 X 162901679 to 162901693 14 + TSS region transcription start site region 162590
Tssr162591 X 162901694 to 162901733 39 + TSS region transcription start site region 162591
Tssr162592 X 162901762 to 162901773 11 + TSS region transcription start site region 162592
Gm19107 X 162908021 to 162908929 908 - pseudogene predicted gene, 19107
DXMit182 X 162948861 to 162948977 116 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 182
S100g X 162961992 to 162964599 2607 - protein coding gene S100 calcium binding protein G
Tssr164517 X 162964228 to 162964237 9 - TSS region transcription start site region 164517
Tssr164518 X 162964557 to 162964576 19 - TSS region transcription start site region 164518
Gm23501 X 163069614 to 163069869 255 - unclassified non-coding RNA gene predicted gene, 23501
Gm22746 X 163150391 to 163150497 106 - snRNA gene predicted gene, 22746
Gm15215 X 163208312 to 163208800 488 - pseudogene predicted gene 15215
Gm15212 X 163272912 to 163273377 465 + pseudogene predicted gene 15212
DXMit156 X 163318923 to 163319049 126 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 156
Gm15214 X 163326900 to 163327369 469 - pseudogene predicted gene 15214
DXMit157 X 163385220 to 163385360 140 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 157
Gm26007 X 163388772 to 163388891 119 - snRNA gene predicted gene, 26007
Gm7199 X 163477652 to 163479136 1484 + pseudogene predicted gene 7199
Grpr X 163513904 to 163549677 35773 - protein coding gene gastrin releasing peptide receptor
DXMit21 X 163549357 to 163549527 170 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 21
DXMit20 X 163549384 to 163549527 143 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 20
DXMit15 X 163693753 to 163693860 107 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 15
Rnf138rt1 X 163760139 to 163761329 1190 - protein coding gene ring finger protein 138, retrogene 1
Cpgi23041 X 163760855 to 163761201 346 CpG island CpG island 23041
Tssr164519 X 163761293 to 163761315 22 - TSS region transcription start site region 164519
Tssr164520 X 163761323 to 163761344 21 - TSS region transcription start site region 164520
DXMit236 X 163766177 to 163766338 161 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 236
Gm15213 X 163778229 to 163778444 215 - pseudogene predicted gene 15213
Gm20188 X 163826859 to 163827232 373 - pseudogene predicted gene, 20188
Tssr164521 X 163885476 to 163885484 8 - TSS region transcription start site region 164521
Cpgi23042 X 163908460 to 163909728 1268 CpG island CpG island 23042
Tssr162593 X 163908982 to 163908993 11 + TSS region transcription start site region 162593
Ap1s2 X 163909017 to 163933666 24649 + protein coding gene adaptor-related protein complex 1, sigma 2 subunit
Tssr162594 X 163909098 to 163909099 1 + TSS region transcription start site region 162594
Tssr162595 X 163909106 to 163909128 22 + TSS region transcription start site region 162595
Tssr162596 X 163909132 to 163909169 37 + TSS region transcription start site region 162596
Tssr162597 X 163909175 to 163909184 9 + TSS region transcription start site region 162597
Tssr162598 X 163909203 to 163909210 7 + TSS region transcription start site region 162598
Tssr162599 X 163909597 to 163909606 9 + TSS region transcription start site region 162599
Tssr162600 X 163911425 to 163911439 14 + TSS region transcription start site region 162600
Tssr162601 X 163921246 to 163921250 4 + TSS region transcription start site region 162601
9230113A04Rik X 163925976 to 163926554 578 unclassified gene RIKEN cDNA 9230113A04 gene
Tssr162602 X 163927633 to 163927668 35 + TSS region transcription start site region 162602
Tssr162603 X 163927721 to 163927733 12 + TSS region transcription start site region 162603
Zrsr2 X 163935443 to 163958661 23218 - protein coding gene zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2
Cpgi23043 X 163957653 to 163958644 991 CpG island CpG island 23043
Tssr164522 X 163958086 to 163958132 46 - TSS region transcription start site region 164522
Tssr162604 X 163958239 to 163958312 73 + TSS region transcription start site region 162604
Tssr164523 X 163958563 to 163958588 25 - TSS region transcription start site region 164523
Tssr164524 X 163958590 to 163958597 7 - TSS region transcription start site region 164524
Tssr164525 X 163958602 to 163958618 16 - TSS region transcription start site region 164525
Tssr164526 X 163958634 to 163958674 40 - TSS region transcription start site region 164526
Tssr162605 X 163958744 to 163958797 53 + TSS region transcription start site region 162605
Gm38561 X 163975332 to 163983833 8501 + lncRNA gene predicted gene, 38561
DXMit249 X 163975834 to 163975945 111 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 249
Car5b X 163976822 to 164027997 51175 - protein coding gene carbonic anhydrase 5b, mitochondrial
Tssr164527 X 164021898 to 164021942 44 - TSS region transcription start site region 164527
Tssr164528 X 164027965 to 164027994 29 - TSS region transcription start site region 164528
Tssr164529 X 164028000 to 164028029 29 - TSS region transcription start site region 164529
Tssr164530 X 164042326 to 164042340 14 - TSS region transcription start site region 164530
Siah1b X 164070705 to 164076493 5788 - protein coding gene siah E3 ubiquitin protein ligase 1B
Cpgi23044 X 164075970 to 164076674 704 CpG island CpG island 23044
Tssr164531 X 164076100 to 164076129 29 - TSS region transcription start site region 164531
Tssr5717 X 164076130 to 164076166 36 - TSS region transcription start site region 5717
Tssr164532 X 164076446 to 164076462 16 - TSS region transcription start site region 164532
Tssr164533 X 164076482 to 164076511 29 - TSS region transcription start site region 164533
Cltrn X 164090187 to 164118859 28672 + protein coding gene collectrin, amino acid transport regulator
Tssr162606 X 164090188 to 164090201 13 + TSS region transcription start site region 162606
Tssr162607 X 164090236 to 164090249 13 + TSS region transcription start site region 162607
Tssr162608 X 164118325 to 164118342 17 + TSS region transcription start site region 162608
Tssr162609 X 164120017 to 164120020 3 + TSS region transcription start site region 162609
n-R5s18 X 164133385 to 164133505 120 + rRNA gene nuclear encoded rRNA 5S 18
Tssr162610 X 164139321 to 164139337 16 + TSS region transcription start site region 162610
Ace2 X 164139342 to 164188418 49076 + protein coding gene angiotensin I converting enzyme (peptidyl-dipeptidase A) 2
Tssr162611 X 164139350 to 164139369 19 + TSS region transcription start site region 162611
Tssr162612 X 164139370 to 164139397 27 + TSS region transcription start site region 162612
Tssr162613 X 164140447 to 164140495 48 + TSS region transcription start site region 162613
Tssr162614 X 164140546 to 164140562 16 + TSS region transcription start site region 162614
Tssr162615 X 164140595 to 164140639 44 + TSS region transcription start site region 162615
Tssr162616 X 164140654 to 164140659 5 + TSS region transcription start site region 162616
Tssr162617 X 164157920 to 164157934 14 + TSS region transcription start site region 162617
Tssr162618 X 164162134 to 164162153 19 + TSS region transcription start site region 162618
Tssr162619 X 164162167 to 164162194 27 + TSS region transcription start site region 162619
Tssr162620 X 164162212 to 164162224 12 + TSS region transcription start site region 162620
Bmx X 164192842 to 164258193 65351 - protein coding gene BMX non-receptor tyrosine kinase
Tssr162621 X 164200812 to 164200837 25 + TSS region transcription start site region 162621
Gm19251 X 164220971 to 164225305 4334 + pseudogene predicted gene, 19251
Tssr164534 X 164229176 to 164229178 2 - TSS region transcription start site region 164534
Tssr164535 X 164246730 to 164246745 15 - TSS region transcription start site region 164535
Tssr164536 X 164250376 to 164250382 6 - TSS region transcription start site region 164536
DXMit122 X 164253196 to 164253315 119 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 122
Tssr164537 X 164258186 to 164258199 13 - TSS region transcription start site region 164537
Tssr164538 X 164258820 to 164258825 5 - TSS region transcription start site region 164538
Gm25367 X 164268071 to 164268176 105 - snRNA gene predicted gene, 25367
Pir X 164269431 to 164373013 103582 + protein coding gene pirin
Cpgi23045 X 164269480 to 164269671 191 CpG island CpG island 23045
Tssr162622 X 164269499 to 164269522 23 + TSS region transcription start site region 162622
Tssr162623 X 164269523 to 164269571 48 + TSS region transcription start site region 162623
Tssr162624 X 164269572 to 164269612 40 + TSS region transcription start site region 162624
Gm46692 X 164275938 to 164276236 298 - pseudogene predicted gene, 46692
Gm22023 X 164283096 to 164283225 129 + snoRNA gene predicted gene, 22023
Tssr162625 X 164373279 to 164373294 15 + TSS region transcription start site region 162625
Tssr162626 X 164373310 to 164373321 11 + TSS region transcription start site region 162626
Tssr162627 X 164373327 to 164373352 25 + TSS region transcription start site region 162627
Tssr162628 X 164373363 to 164373375 12 + TSS region transcription start site region 162628
Vegfd X 164373378 to 164402650 29272 + protein coding gene vascular endothelial growth factor D
Tssr162629 X 164373386 to 164373412 26 + TSS region transcription start site region 162629
Tssr164539 X 164373420 to 164373424 4 - TSS region transcription start site region 164539
Tssr162630 X 164373427 to 164373433 6 + TSS region transcription start site region 162630