Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:161227734-162409587

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44 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cia19 X 122083468 to 161430042 39346574 QTL collagen induced arthritis QTL 19
Scml2 X 161117193 to 161258213 141020 + protein coding gene Scm polycomb group protein like 2
Gm5419 X 161272237 to 161272840 603 - pseudogene predicted gene 5419
Tssr162572 X 161297767 to 161297778 11 + TSS region transcription start site region 162572
Tssr162573 X 161297793 to 161297806 13 + TSS region transcription start site region 162573
Gm15262 X 161297856 to 161334722 36866 + protein coding gene predicted gene 15262
Gm36049 X 161357881 to 161364590 6709 + protein coding gene predicted gene, 36049
DXMit121.1 X 161429749 to 161429897 148 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 121.1
DXMit121 X 161429897 to 161430042 145 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 121
Obsty5 X 161429897 to 165366288 3936391 QTL obesity 5
Prkaca-ps1 X 161485567 to 161486485 918 - pseudogene protein kinase, cAMP dependent, catalytic, alpha pseudogene 1
Cpgi23033 X 161716734 to 161717942 1208 CpG island CpG island 23033
Tssr162574 X 161717025 to 161717039 14 + TSS region transcription start site region 162574
Tssr162575 X 161717055 to 161717073 18 + TSS region transcription start site region 162575
Rai2 X 161717069 to 161779496 62427 + protein coding gene retinoic acid induced 2
Tssr162576 X 161717461 to 161717496 35 + TSS region transcription start site region 162576
Tssr162577 X 161717498 to 161717519 21 + TSS region transcription start site region 162577
Tssr5716 X 161717641 to 161717657 16 + TSS region transcription start site region 5716
Tssr164489 X 161777847 to 161777855 8 - TSS region transcription start site region 164489
Tssr162578 X 161777941 to 161777959 18 + TSS region transcription start site region 162578
Scml1 X 161817734 to 161819587 1853 - lincRNA gene Scm polycomb group protein like 1
Gm15205 X 161821366 to 161832112 10746 - lincRNA gene predicted gene 15205
Tssr164490 X 161832116 to 161832127 11 - TSS region transcription start site region 164490
Nhs X 161833290 to 162159441 326151 - protein coding gene NHS actin remodeling regulator
Cpgi23034 X 161908071 to 161909392 1321 CpG island CpG island 23034
Gm15202 X 161908223 to 161908777 554 + antisense lncRNA gene predicted gene 15202
DXMit32 X 161975838 to 161975954 116 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 32
Tssr164491 X 162018855 to 162018887 32 - TSS region transcription start site region 164491
Tssr164492 X 162018961 to 162018975 14 - TSS region transcription start site region 164492
Tssr164493 X 162019460 to 162019470 10 - TSS region transcription start site region 164493
Gm26317 X 162069457 to 162069563 106 + snRNA gene predicted gene, 26317
Tssr164494 X 162069465 to 162069469 4 - TSS region transcription start site region 164494
Tssr164495 X 162072418 to 162072423 5 - TSS region transcription start site region 164495
Tssr164496 X 162085384 to 162085388 4 - TSS region transcription start site region 164496
Gm23794 X 162114238 to 162114341 103 + snRNA gene predicted gene, 23794
Tssr164497 X 162122661 to 162122663 2 - TSS region transcription start site region 164497
Tssr164498 X 162125824 to 162125870 46 - TSS region transcription start site region 164498
Cpgi23035 X 162158692 to 162160454 1762 CpG island CpG island 23035
Tssr164499 X 162159717 to 162159732 15 - TSS region transcription start site region 164499
Tssr164500 X 162159929 to 162160009 80 - TSS region transcription start site region 164500
Gm27490 X 162237099 to 162237226 127 + rRNA gene predicted gene, 27490
Gm23867 X 162305029 to 162305302 273 - unclassified non-coding RNA gene predicted gene, 23867
Gm15204 X 162351596 to 162353876 2280 + pseudogene predicted gene 15204
Tssr164501 X 162375467 to 162375472 5 - TSS region transcription start site region 164501