Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:160523094-160835765

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27 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Phka2 X 160502166 to 160598878 96712 + protein coding gene phosphorylase kinase alpha 2
Gm15243 X 160527501 to 160533045 5544 - antisense lncRNA gene predicted gene 15243
Tssr162557 X 160529703 to 160529716 13 + TSS region transcription start site region 162557
Tssr162558 X 160529929 to 160529955 26 + TSS region transcription start site region 162558
Tssr162559 X 160529980 to 160530029 49 + TSS region transcription start site region 162559
Tssr162560 X 160530049 to 160530061 12 + TSS region transcription start site region 162560
Tssr162561 X 160530155 to 160530178 23 + TSS region transcription start site region 162561
Ppef1 X 160623094 to 160735765 112671 - protein coding gene protein phosphatase with EF hand calcium-binding domain 1
Gm15242 X 160713896 to 160714178 282 - pseudogene predicted gene 15242
Gm15244 X 160714196 to 160714325 129 + pseudogene predicted gene 15244
Tssr164479 X 160735747 to 160735758 11 - TSS region transcription start site region 164479
Tssr164480 X 160735801 to 160735812 11 - TSS region transcription start site region 164480
Tssr164481 X 160751264 to 160751274 10 - TSS region transcription start site region 164481
Tssr164482 X 160751286 to 160751299 13 - TSS region transcription start site region 164482
n-TVtac3 X 160766110 to 160766182 72 + tRNA gene nuclear encoded tRNA valine 3 (anticodon TAC)
Rs1 X 160768013 to 160799663 31650 + protein coding gene retinoschisis (X-linked, juvenile) 1 (human)
Tssr162562 X 160768109 to 160768122 13 + TSS region transcription start site region 162562
Tssr162563 X 160768126 to 160768129 3 + TSS region transcription start site region 162563
Tssr162564 X 160768137 to 160768168 31 + TSS region transcription start site region 162564
Tssr162565 X 160768179 to 160768183 4 + TSS region transcription start site region 162565
Tssr162566 X 160780603 to 160780607 4 + TSS region transcription start site region 162566
Cdkl5 X 160784308 to 160994681 210373 - protein coding gene cyclin-dependent kinase-like 5
Tssr5715 X 160792478 to 160792481 3 + TSS region transcription start site region 5715
Tssr162567 X 160794751 to 160794758 7 + TSS region transcription start site region 162567
Tssr162568 X 160796158 to 160796167 9 + TSS region transcription start site region 162568
2900054C01Rik X 160801392 to 160802750 1358 unclassified gene RIKEN cDNA 2900054C01 gene
Tssr164483 X 160806709 to 160806750 41 - TSS region transcription start site region 164483