Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:160447504-161717537

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67 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cia19 X 122083468 to 161430042 39346574 QTL collagen induced arthritis QTL 19
Adgrg2 X 160390690 to 160498070 107380 + protein coding gene adhesion G protein-coupled receptor G2
Gm15241 X 160488703 to 160499818 11115 - antisense lncRNA gene predicted gene 15241
DXMit220 X 160489882 to 160490003 121 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 220
Cpgi23029 X 160501926 to 160502882 956 CpG island CpG island 23029
Tssr162551 X 160502153 to 160502201 48 + TSS region transcription start site region 162551
Phka2 X 160502166 to 160598878 96712 + protein coding gene phosphorylase kinase alpha 2
Tssr162552 X 160502418 to 160502485 67 + TSS region transcription start site region 162552
Tssr162553 X 160502508 to 160502524 16 + TSS region transcription start site region 162553
Tssr162554 X 160502631 to 160502706 75 + TSS region transcription start site region 162554
Tssr162555 X 160502712 to 160502731 19 + TSS region transcription start site region 162555
Tssr162556 X 160505179 to 160505182 3 + TSS region transcription start site region 162556
Gm15243 X 160527501 to 160533045 5544 - antisense lncRNA gene predicted gene 15243
Tssr162557 X 160529703 to 160529716 13 + TSS region transcription start site region 162557
Tssr162558 X 160529929 to 160529955 26 + TSS region transcription start site region 162558
Tssr162559 X 160529980 to 160530029 49 + TSS region transcription start site region 162559
Tssr162560 X 160530049 to 160530061 12 + TSS region transcription start site region 162560
Tssr162561 X 160530155 to 160530178 23 + TSS region transcription start site region 162561
Ppef1 X 160623094 to 160735765 112671 - protein coding gene protein phosphatase with EF hand calcium-binding domain 1
Gm15242 X 160713896 to 160714178 282 - pseudogene predicted gene 15242
Gm15244 X 160714196 to 160714325 129 + pseudogene predicted gene 15244
Tssr164479 X 160735747 to 160735758 11 - TSS region transcription start site region 164479
Tssr164480 X 160735801 to 160735812 11 - TSS region transcription start site region 164480
Tssr164481 X 160751264 to 160751274 10 - TSS region transcription start site region 164481
Tssr164482 X 160751286 to 160751299 13 - TSS region transcription start site region 164482
n-TVtac3 X 160766110 to 160766182 72 + tRNA gene nuclear encoded tRNA valine 3 (anticodon TAC)
Rs1 X 160768013 to 160799663 31650 + protein coding gene retinoschisis (X-linked, juvenile) 1 (human)
Tssr162562 X 160768109 to 160768122 13 + TSS region transcription start site region 162562
Tssr162563 X 160768126 to 160768129 3 + TSS region transcription start site region 162563
Tssr162564 X 160768137 to 160768168 31 + TSS region transcription start site region 162564
Tssr162565 X 160768179 to 160768183 4 + TSS region transcription start site region 162565
Tssr162566 X 160780603 to 160780607 4 + TSS region transcription start site region 162566
Cdkl5 X 160784308 to 160994681 210373 - protein coding gene cyclin-dependent kinase-like 5
Tssr5715 X 160792478 to 160792481 3 + TSS region transcription start site region 5715
Tssr162567 X 160794751 to 160794758 7 + TSS region transcription start site region 162567
Tssr162568 X 160796158 to 160796167 9 + TSS region transcription start site region 162568
2900054C01Rik X 160801392 to 160802750 1358 unclassified gene RIKEN cDNA 2900054C01 gene
Tssr164483 X 160806709 to 160806750 41 - TSS region transcription start site region 164483
Gja6 X 160902116 to 160907052 4936 - protein coding gene gap junction protein, alpha 6
Tssr164484 X 160906998 to 160907014 16 - TSS region transcription start site region 164484
Tssr164485 X 160976488 to 160976499 11 - TSS region transcription start site region 164485
Tssr164486 X 160976501 to 160976509 8 - TSS region transcription start site region 164486
Cpgi23030 X 160993975 to 160995127 1152 CpG island CpG island 23030
Tssr164487 X 160994641 to 160994661 20 - TSS region transcription start site region 164487
Tssr164488 X 160994665 to 160994686 21 - TSS region transcription start site region 164488
Cpgi23031 X 160995404 to 160995570 166 CpG island CpG island 23031
Tssr162569 X 161082504 to 161082537 33 + TSS region transcription start site region 162569
Scml2 X 161117193 to 161258213 141020 + protein coding gene Scm polycomb group protein like 2
n-TLtaa1 X 161135134 to 161135216 82 + tRNA gene nuclear encoded tRNA leucine 1 (anticodon TAA)
Tssr162570 X 161162744 to 161162775 31 + TSS region transcription start site region 162570
Cpgi23032 X 161162754 to 161163023 269 CpG island CpG island 23032
Tssr162571 X 161162994 to 161163054 60 + TSS region transcription start site region 162571
Gm5419 X 161272237 to 161272840 603 - pseudogene predicted gene 5419
Tssr162572 X 161297767 to 161297778 11 + TSS region transcription start site region 162572
Tssr162573 X 161297793 to 161297806 13 + TSS region transcription start site region 162573
Gm15262 X 161297856 to 161334722 36866 + protein coding gene predicted gene 15262
Gm36049 X 161357881 to 161364590 6709 + protein coding gene predicted gene, 36049
DXMit121.1 X 161429749 to 161429897 148 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 121.1
DXMit121 X 161429897 to 161430042 145 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 121
Obsty5 X 161429897 to 165366288 3936391 QTL obesity 5
Prkaca-ps1 X 161485567 to 161486485 918 - pseudogene protein kinase, cAMP dependent, catalytic, alpha pseudogene 1
Cpgi23033 X 161716734 to 161717942 1208 CpG island CpG island 23033
Tssr162574 X 161717025 to 161717039 14 + TSS region transcription start site region 162574
Tssr162575 X 161717055 to 161717073 18 + TSS region transcription start site region 162575
Rai2 X 161717069 to 161779496 62427 + protein coding gene retinoic acid induced 2
Tssr162576 X 161717461 to 161717496 35 + TSS region transcription start site region 162576
Tssr162577 X 161717498 to 161717519 21 + TSS region transcription start site region 162577