Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:159944007-160674488

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51 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sh3kbp1 X 159627028 to 159975920 348892 + protein coding gene SH3-domain kinase binding protein 1
Tssr162537 X 159944408 to 159944412 4 + TSS region transcription start site region 162537
Tssr162538 X 159961762 to 159961798 36 + TSS region transcription start site region 162538
Tssr162539 X 159973441 to 159973460 19 + TSS region transcription start site region 162539
Tssr162540 X 159973542 to 159973554 12 + TSS region transcription start site region 162540
Tssr162541 X 159973685 to 159973700 15 + TSS region transcription start site region 162541
Cpgi23026 X 159988019 to 159988931 912 CpG island CpG island 23026
Tssr162542 X 159988223 to 159988251 28 + TSS region transcription start site region 162542
Map3k15 X 159988433 to 160123351 134918 + protein coding gene mitogen-activated protein kinase kinase kinase 15
Gm15194 X 160020290 to 160020723 433 - pseudogene predicted gene 15194
Gm8682 X 160036321 to 160036818 497 + pseudogene predicted gene 8682
Pdha1 X 160122209 to 160138413 16204 - protein coding gene pyruvate dehydrogenase E1 alpha 1
Tssr162543 X 160126016 to 160126025 9 + TSS region transcription start site region 162543
Gm39547 X 160134585 to 160138247 3662 - lncRNA gene predicted gene, 39547
Cpgi23027 X 160137812 to 160138610 798 CpG island CpG island 23027
Tssr164474 X 160138324 to 160138336 12 - TSS region transcription start site region 164474
Tssr164475 X 160138349 to 160138371 22 - TSS region transcription start site region 164475
Tssr164476 X 160138375 to 160138435 60 - TSS region transcription start site region 164476
Gm15195 X 160269701 to 160269963 262 - pseudogene predicted gene 15195
Gm15192 X 160298478 to 160298770 292 + pseudogene predicted gene 15192
Gm15196 X 160309007 to 160309488 481 - pseudogene predicted gene 15196
Gm39548 X 160328737 to 160338598 9861 - lncRNA gene predicted gene, 39548
Tssr164477 X 160338533 to 160338541 8 - TSS region transcription start site region 164477
Tssr164478 X 160338632 to 160338636 4 - TSS region transcription start site region 164478
Gm15193 X 160345225 to 160345944 719 - pseudogene predicted gene 15193
Cpgi23028 X 160390439 to 160390955 516 CpG island CpG island 23028
Tssr162544 X 160390472 to 160390494 22 + TSS region transcription start site region 162544
Tssr162545 X 160390560 to 160390616 56 + TSS region transcription start site region 162545
Tssr162546 X 160390684 to 160390730 46 + TSS region transcription start site region 162546
Adgrg2 X 160390690 to 160498070 107380 + protein coding gene adhesion G protein-coupled receptor G2
Tssr162547 X 160391544 to 160391572 28 + TSS region transcription start site region 162547
Tssr162548 X 160404472 to 160404476 4 + TSS region transcription start site region 162548
Tssr162549 X 160434901 to 160434906 5 + TSS region transcription start site region 162549
Tssr162550 X 160438243 to 160438253 10 + TSS region transcription start site region 162550
Gm15241 X 160488703 to 160499818 11115 - antisense lncRNA gene predicted gene 15241
DXMit220 X 160489882 to 160490003 121 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 220
Cpgi23029 X 160501926 to 160502882 956 CpG island CpG island 23029
Tssr162551 X 160502153 to 160502201 48 + TSS region transcription start site region 162551
Phka2 X 160502166 to 160598878 96712 + protein coding gene phosphorylase kinase alpha 2
Tssr162552 X 160502418 to 160502485 67 + TSS region transcription start site region 162552
Tssr162553 X 160502508 to 160502524 16 + TSS region transcription start site region 162553
Tssr162554 X 160502631 to 160502706 75 + TSS region transcription start site region 162554
Tssr162555 X 160502712 to 160502731 19 + TSS region transcription start site region 162555
Tssr162556 X 160505179 to 160505182 3 + TSS region transcription start site region 162556
Gm15243 X 160527501 to 160533045 5544 - antisense lncRNA gene predicted gene 15243
Tssr162557 X 160529703 to 160529716 13 + TSS region transcription start site region 162557
Tssr162558 X 160529929 to 160529955 26 + TSS region transcription start site region 162558
Tssr162559 X 160529980 to 160530029 49 + TSS region transcription start site region 162559
Tssr162560 X 160530049 to 160530061 12 + TSS region transcription start site region 162560
Tssr162561 X 160530155 to 160530178 23 + TSS region transcription start site region 162561
Ppef1 X 160623094 to 160735765 112671 - protein coding gene protein phosphatase with EF hand calcium-binding domain 1