Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:159480332-160250352

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stpy X 146673077 to 159645105 12972028 heritable phenotypic marker stripey
Map7d2 X 159414572 to 159498757 84185 + protein coding gene MAP7 domain containing 2
Tssr162490 X 159482275 to 159482294 19 + TSS region transcription start site region 162490
Tssr162491 X 159482985 to 159483001 16 + TSS region transcription start site region 162491
Tssr162492 X 159488812 to 159488815 3 + TSS region transcription start site region 162492
Tssr162493 X 159489309 to 159489327 18 + TSS region transcription start site region 162493
Gm39546 X 159507549 to 159516568 9019 - lncRNA gene predicted gene, 39546
Tssr5714 X 159508845 to 159508863 18 - TSS region transcription start site region 5714
DXMit33 X 159524832 to 159524962 130 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 33
Cpgi23024 X 159532449 to 159533655 1206 CpG island CpG island 23024
Bclaf3 X 159532640 to 159593081 60441 + protein coding gene Bclaf1 and Thrap3 family member 3
Tssr162494 X 159532655 to 159532668 13 + TSS region transcription start site region 162494
Tssr162495 X 159532674 to 159532748 74 + TSS region transcription start site region 162495
Tssr162496 X 159532762 to 159532775 13 + TSS region transcription start site region 162496
Panct1 X 159534484 to 159538528 4044 unclassified non-coding RNA gene pluripotency-associated noncoding transcript 1
4930422N03Rik X 159559977 to 159561973 1996 unclassified gene RIKEN cDNA 4930422N03 gene
Gm15190 X 159584783 to 159585058 275 - pseudogene predicted gene 15190
Tssr162497 X 159588315 to 159588352 37 + TSS region transcription start site region 162497
Gm15186 X 159588465 to 159589027 562 + pseudogene predicted gene 15186
Cpgi23025 X 159626671 to 159628000 1329 CpG island CpG island 23025
Sh3kbp1 X 159627028 to 159975920 348892 + protein coding gene SH3-domain kinase binding protein 1
Tssr162498 X 159627039 to 159627076 37 + TSS region transcription start site region 162498
Tssr162499 X 159627082 to 159627103 21 + TSS region transcription start site region 162499
Tssr162500 X 159627235 to 159627258 23 + TSS region transcription start site region 162500
Tssr162501 X 159627265 to 159627298 33 + TSS region transcription start site region 162501
Tssr162502 X 159627384 to 159627399 15 + TSS region transcription start site region 162502
Tssr162503 X 159627432 to 159627441 9 + TSS region transcription start site region 162503
Tssr162504 X 159627464 to 159627478 14 + TSS region transcription start site region 162504
Tssr162505 X 159627500 to 159627514 14 + TSS region transcription start site region 162505
Tssr162506 X 159627534 to 159627546 12 + TSS region transcription start site region 162506
Tssr162507 X 159627547 to 159627558 11 + TSS region transcription start site region 162507
Tssr162508 X 159638849 to 159638876 27 + TSS region transcription start site region 162508
Li X 159644928 to 163549527 3904599 heritable phenotypic marker lined
DXMit28 X 159644928 to 159645105 177 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 28
Tssr162509 X 159697308 to 159697331 23 + TSS region transcription start site region 162509
Tssr162510 X 159697343 to 159697350 7 + TSS region transcription start site region 162510
Tssr162511 X 159701349 to 159701354 5 + TSS region transcription start site region 162511
Tssr162512 X 159706093 to 159706101 8 + TSS region transcription start site region 162512
Tssr162513 X 159708593 to 159708612 19 + TSS region transcription start site region 162513
Tssr162514 X 159708614 to 159708642 28 + TSS region transcription start site region 162514
Tssr162515 X 159708655 to 159708660 5 + TSS region transcription start site region 162515
DXMit99 X 159714695 to 159714842 147 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 99
Tssr164473 X 159758244 to 159758248 4 - TSS region transcription start site region 164473
Tssr162516 X 159840060 to 159840064 4 + TSS region transcription start site region 162516
Tssr162517 X 159840463 to 159840472 9 + TSS region transcription start site region 162517
Tssr162518 X 159840544 to 159840574 30 + TSS region transcription start site region 162518
Tssr162519 X 159865332 to 159865352 20 + TSS region transcription start site region 162519
Tssr162520 X 159878060 to 159878074 14 + TSS region transcription start site region 162520
Tssr162521 X 159901720 to 159901738 18 + TSS region transcription start site region 162521
Tssr162522 X 159913983 to 159914004 21 + TSS region transcription start site region 162522
Tssr162523 X 159917225 to 159917240 15 + TSS region transcription start site region 162523
DXMit189 X 159918982 to 159919100 118 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 189
Tssr162524 X 159924915 to 159924938 23 + TSS region transcription start site region 162524
Tssr162525 X 159940433 to 159940447 14 + TSS region transcription start site region 162525
Tssr162526 X 159941693 to 159941712 19 + TSS region transcription start site region 162526
Tssr162527 X 159942683 to 159942705 22 + TSS region transcription start site region 162527
Tssr162528 X 159942844 to 159942870 26 + TSS region transcription start site region 162528
Tssr162529 X 159942889 to 159942902 13 + TSS region transcription start site region 162529
Tssr162530 X 159942905 to 159942919 14 + TSS region transcription start site region 162530
Tssr162531 X 159942922 to 159942945 23 + TSS region transcription start site region 162531
Tssr162532 X 159942948 to 159942976 28 + TSS region transcription start site region 162532
Tssr162533 X 159942980 to 159942994 14 + TSS region transcription start site region 162533
Tssr162534 X 159943000 to 159943033 33 + TSS region transcription start site region 162534
Tssr162535 X 159943046 to 159943057 11 + TSS region transcription start site region 162535
Tssr162536 X 159943091 to 159943105 14 + TSS region transcription start site region 162536
Tssr162537 X 159944408 to 159944412 4 + TSS region transcription start site region 162537
Tssr162538 X 159961762 to 159961798 36 + TSS region transcription start site region 162538
Tssr162539 X 159973441 to 159973460 19 + TSS region transcription start site region 162539
Tssr162540 X 159973542 to 159973554 12 + TSS region transcription start site region 162540
Tssr162541 X 159973685 to 159973700 15 + TSS region transcription start site region 162541
Cpgi23026 X 159988019 to 159988931 912 CpG island CpG island 23026
Tssr162542 X 159988223 to 159988251 28 + TSS region transcription start site region 162542
Map3k15 X 159988433 to 160123351 134918 + protein coding gene mitogen-activated protein kinase kinase kinase 15
Gm15194 X 160020290 to 160020723 433 - pseudogene predicted gene 15194
Gm8682 X 160036321 to 160036818 497 + pseudogene predicted gene 8682
Pdha1 X 160122209 to 160138413 16204 - protein coding gene pyruvate dehydrogenase E1 alpha 1
Tssr162543 X 160126016 to 160126025 9 + TSS region transcription start site region 162543
Gm39547 X 160134585 to 160138247 3662 - lncRNA gene predicted gene, 39547
Cpgi23027 X 160137812 to 160138610 798 CpG island CpG island 23027
Tssr164474 X 160138324 to 160138336 12 - TSS region transcription start site region 164474
Tssr164475 X 160138349 to 160138371 22 - TSS region transcription start site region 164475
Tssr164476 X 160138375 to 160138435 60 - TSS region transcription start site region 164476