Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:159338094-162020765

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201 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cia19 X 122083468 to 161430042 39346574 QTL collagen induced arthritis QTL 19
Stpy X 146673077 to 159645105 12972028 heritable phenotypic marker stripey
Rps6ka3 X 159255696 to 159368244 112548 + protein coding gene ribosomal protein S6 kinase polypeptide 3
Tssr162473 X 159341707 to 159341710 3 + TSS region transcription start site region 162473
Tssr162474 X 159364170 to 159364181 11 + TSS region transcription start site region 162474
Tssr162475 X 159364287 to 159364314 27 + TSS region transcription start site region 162475
Tssr162476 X 159364921 to 159364931 10 + TSS region transcription start site region 162476
Cpgi23022 X 159371774 to 159372702 928 CpG island CpG island 23022
Tssr162477 X 159371979 to 159372018 39 + TSS region transcription start site region 162477
Tssr162478 X 159372175 to 159372290 115 + TSS region transcription start site region 162478
Eif1ax X 159372195 to 159385699 13504 + protein coding gene eukaryotic translation initiation factor 1A, X-linked
Tssr162479 X 159372291 to 159372300 9 + TSS region transcription start site region 162479
Tssr162480 X 159372305 to 159372316 11 + TSS region transcription start site region 162480
Gm15187 X 159410247 to 159410510 263 - pseudogene predicted gene 15187
Cpgi23023 X 159414142 to 159415711 1569 CpG island CpG island 23023
Tssr162481 X 159414526 to 159414536 10 + TSS region transcription start site region 162481
Map7d2 X 159414572 to 159498757 84185 + protein coding gene MAP7 domain containing 2
Tssr162482 X 159414578 to 159414589 11 + TSS region transcription start site region 162482
Tssr162483 X 159414637 to 159414655 18 + TSS region transcription start site region 162483
Tssr162484 X 159414659 to 159414711 52 + TSS region transcription start site region 162484
Gm23806 X 159449277 to 159449385 108 + rRNA gene predicted gene, 23806
Tssr5713 X 159456411 to 159456424 13 + TSS region transcription start site region 5713
Tssr162485 X 159459133 to 159459165 32 + TSS region transcription start site region 162485
Tssr162486 X 159459167 to 159459193 26 + TSS region transcription start site region 162486
Tssr162487 X 159459199 to 159459214 15 + TSS region transcription start site region 162487
Tssr162488 X 159472840 to 159472854 14 + TSS region transcription start site region 162488
Tssr162489 X 159472867 to 159472881 14 + TSS region transcription start site region 162489
Tssr162490 X 159482275 to 159482294 19 + TSS region transcription start site region 162490
Tssr162491 X 159482985 to 159483001 16 + TSS region transcription start site region 162491
Tssr162492 X 159488812 to 159488815 3 + TSS region transcription start site region 162492
Tssr162493 X 159489309 to 159489327 18 + TSS region transcription start site region 162493
Gm39546 X 159507549 to 159516568 9019 - lncRNA gene predicted gene, 39546
Tssr5714 X 159508845 to 159508863 18 - TSS region transcription start site region 5714
DXMit33 X 159524832 to 159524962 130 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 33
Cpgi23024 X 159532449 to 159533655 1206 CpG island CpG island 23024
Bclaf3 X 159532640 to 159593081 60441 + protein coding gene Bclaf1 and Thrap3 family member 3
Tssr162494 X 159532655 to 159532668 13 + TSS region transcription start site region 162494
Tssr162495 X 159532674 to 159532748 74 + TSS region transcription start site region 162495
Tssr162496 X 159532762 to 159532775 13 + TSS region transcription start site region 162496
Panct1 X 159534484 to 159538528 4044 unclassified non-coding RNA gene pluripotency-associated noncoding transcript 1
4930422N03Rik X 159559977 to 159561973 1996 unclassified gene RIKEN cDNA 4930422N03 gene
Gm15190 X 159584783 to 159585058 275 - pseudogene predicted gene 15190
Tssr162497 X 159588315 to 159588352 37 + TSS region transcription start site region 162497
Gm15186 X 159588465 to 159589027 562 + pseudogene predicted gene 15186
Cpgi23025 X 159626671 to 159628000 1329 CpG island CpG island 23025
Sh3kbp1 X 159627028 to 159975920 348892 + protein coding gene SH3-domain kinase binding protein 1
Tssr162498 X 159627039 to 159627076 37 + TSS region transcription start site region 162498
Tssr162499 X 159627082 to 159627103 21 + TSS region transcription start site region 162499
Tssr162500 X 159627235 to 159627258 23 + TSS region transcription start site region 162500
Tssr162501 X 159627265 to 159627298 33 + TSS region transcription start site region 162501
Tssr162502 X 159627384 to 159627399 15 + TSS region transcription start site region 162502
Tssr162503 X 159627432 to 159627441 9 + TSS region transcription start site region 162503
Tssr162504 X 159627464 to 159627478 14 + TSS region transcription start site region 162504
Tssr162505 X 159627500 to 159627514 14 + TSS region transcription start site region 162505
Tssr162506 X 159627534 to 159627546 12 + TSS region transcription start site region 162506
Tssr162507 X 159627547 to 159627558 11 + TSS region transcription start site region 162507
Tssr162508 X 159638849 to 159638876 27 + TSS region transcription start site region 162508
DXMit28 X 159644928 to 159645105 177 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 28
Li X 159644928 to 163549527 3904599 heritable phenotypic marker lined
Tssr162509 X 159697308 to 159697331 23 + TSS region transcription start site region 162509
Tssr162510 X 159697343 to 159697350 7 + TSS region transcription start site region 162510
Tssr162511 X 159701349 to 159701354 5 + TSS region transcription start site region 162511
Tssr162512 X 159706093 to 159706101 8 + TSS region transcription start site region 162512
Tssr162513 X 159708593 to 159708612 19 + TSS region transcription start site region 162513
Tssr162514 X 159708614 to 159708642 28 + TSS region transcription start site region 162514
Tssr162515 X 159708655 to 159708660 5 + TSS region transcription start site region 162515
DXMit99 X 159714695 to 159714842 147 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 99
Tssr164473 X 159758244 to 159758248 4 - TSS region transcription start site region 164473
Tssr162516 X 159840060 to 159840064 4 + TSS region transcription start site region 162516
Tssr162517 X 159840463 to 159840472 9 + TSS region transcription start site region 162517
Tssr162518 X 159840544 to 159840574 30 + TSS region transcription start site region 162518
Tssr162519 X 159865332 to 159865352 20 + TSS region transcription start site region 162519
Tssr162520 X 159878060 to 159878074 14 + TSS region transcription start site region 162520
Tssr162521 X 159901720 to 159901738 18 + TSS region transcription start site region 162521
Tssr162522 X 159913983 to 159914004 21 + TSS region transcription start site region 162522
Tssr162523 X 159917225 to 159917240 15 + TSS region transcription start site region 162523
DXMit189 X 159918982 to 159919100 118 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 189
Tssr162524 X 159924915 to 159924938 23 + TSS region transcription start site region 162524
Tssr162525 X 159940433 to 159940447 14 + TSS region transcription start site region 162525
Tssr162526 X 159941693 to 159941712 19 + TSS region transcription start site region 162526
Tssr162527 X 159942683 to 159942705 22 + TSS region transcription start site region 162527
Tssr162528 X 159942844 to 159942870 26 + TSS region transcription start site region 162528
Tssr162529 X 159942889 to 159942902 13 + TSS region transcription start site region 162529
Tssr162530 X 159942905 to 159942919 14 + TSS region transcription start site region 162530
Tssr162531 X 159942922 to 159942945 23 + TSS region transcription start site region 162531
Tssr162532 X 159942948 to 159942976 28 + TSS region transcription start site region 162532
Tssr162533 X 159942980 to 159942994 14 + TSS region transcription start site region 162533
Tssr162534 X 159943000 to 159943033 33 + TSS region transcription start site region 162534
Tssr162535 X 159943046 to 159943057 11 + TSS region transcription start site region 162535
Tssr162536 X 159943091 to 159943105 14 + TSS region transcription start site region 162536
Tssr162537 X 159944408 to 159944412 4 + TSS region transcription start site region 162537
Tssr162538 X 159961762 to 159961798 36 + TSS region transcription start site region 162538
Tssr162539 X 159973441 to 159973460 19 + TSS region transcription start site region 162539
Tssr162540 X 159973542 to 159973554 12 + TSS region transcription start site region 162540
Tssr162541 X 159973685 to 159973700 15 + TSS region transcription start site region 162541
Cpgi23026 X 159988019 to 159988931 912 CpG island CpG island 23026
Tssr162542 X 159988223 to 159988251 28 + TSS region transcription start site region 162542
Map3k15 X 159988433 to 160123351 134918 + protein coding gene mitogen-activated protein kinase kinase kinase 15
Gm15194 X 160020290 to 160020723 433 - pseudogene predicted gene 15194
Gm8682 X 160036321 to 160036818 497 + pseudogene predicted gene 8682
Pdha1 X 160122209 to 160138413 16204 - protein coding gene pyruvate dehydrogenase E1 alpha 1
Tssr162543 X 160126016 to 160126025 9 + TSS region transcription start site region 162543
Gm39547 X 160134585 to 160138247 3662 - lncRNA gene predicted gene, 39547
Cpgi23027 X 160137812 to 160138610 798 CpG island CpG island 23027
Tssr164474 X 160138324 to 160138336 12 - TSS region transcription start site region 164474
Tssr164475 X 160138349 to 160138371 22 - TSS region transcription start site region 164475
Tssr164476 X 160138375 to 160138435 60 - TSS region transcription start site region 164476
Gm15195 X 160269701 to 160269963 262 - pseudogene predicted gene 15195
Gm15192 X 160298478 to 160298770 292 + pseudogene predicted gene 15192
Gm15196 X 160309007 to 160309488 481 - pseudogene predicted gene 15196
Gm39548 X 160328737 to 160338598 9861 - lncRNA gene predicted gene, 39548
Tssr164477 X 160338533 to 160338541 8 - TSS region transcription start site region 164477
Tssr164478 X 160338632 to 160338636 4 - TSS region transcription start site region 164478
Gm15193 X 160345225 to 160345944 719 - pseudogene predicted gene 15193
Cpgi23028 X 160390439 to 160390955 516 CpG island CpG island 23028
Tssr162544 X 160390472 to 160390494 22 + TSS region transcription start site region 162544
Tssr162545 X 160390560 to 160390616 56 + TSS region transcription start site region 162545
Tssr162546 X 160390684 to 160390730 46 + TSS region transcription start site region 162546
Adgrg2 X 160390690 to 160498070 107380 + protein coding gene adhesion G protein-coupled receptor G2
Tssr162547 X 160391544 to 160391572 28 + TSS region transcription start site region 162547
Tssr162548 X 160404472 to 160404476 4 + TSS region transcription start site region 162548
Tssr162549 X 160434901 to 160434906 5 + TSS region transcription start site region 162549
Tssr162550 X 160438243 to 160438253 10 + TSS region transcription start site region 162550
Gm15241 X 160488703 to 160499818 11115 - antisense lncRNA gene predicted gene 15241
DXMit220 X 160489882 to 160490003 121 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 220
Cpgi23029 X 160501926 to 160502882 956 CpG island CpG island 23029
Tssr162551 X 160502153 to 160502201 48 + TSS region transcription start site region 162551
Phka2 X 160502166 to 160598878 96712 + protein coding gene phosphorylase kinase alpha 2
Tssr162552 X 160502418 to 160502485 67 + TSS region transcription start site region 162552
Tssr162553 X 160502508 to 160502524 16 + TSS region transcription start site region 162553
Tssr162554 X 160502631 to 160502706 75 + TSS region transcription start site region 162554
Tssr162555 X 160502712 to 160502731 19 + TSS region transcription start site region 162555
Tssr162556 X 160505179 to 160505182 3 + TSS region transcription start site region 162556
Gm15243 X 160527501 to 160533045 5544 - antisense lncRNA gene predicted gene 15243
Tssr162557 X 160529703 to 160529716 13 + TSS region transcription start site region 162557
Tssr162558 X 160529929 to 160529955 26 + TSS region transcription start site region 162558
Tssr162559 X 160529980 to 160530029 49 + TSS region transcription start site region 162559
Tssr162560 X 160530049 to 160530061 12 + TSS region transcription start site region 162560
Tssr162561 X 160530155 to 160530178 23 + TSS region transcription start site region 162561
Ppef1 X 160623094 to 160735765 112671 - protein coding gene protein phosphatase with EF hand calcium-binding domain 1
Gm15242 X 160713896 to 160714178 282 - pseudogene predicted gene 15242
Gm15244 X 160714196 to 160714325 129 + pseudogene predicted gene 15244
Tssr164479 X 160735747 to 160735758 11 - TSS region transcription start site region 164479
Tssr164480 X 160735801 to 160735812 11 - TSS region transcription start site region 164480
Tssr164481 X 160751264 to 160751274 10 - TSS region transcription start site region 164481
Tssr164482 X 160751286 to 160751299 13 - TSS region transcription start site region 164482
n-TVtac3 X 160766110 to 160766182 72 + tRNA gene nuclear encoded tRNA valine 3 (anticodon TAC)
Rs1 X 160768013 to 160799663 31650 + protein coding gene retinoschisis (X-linked, juvenile) 1 (human)
Tssr162562 X 160768109 to 160768122 13 + TSS region transcription start site region 162562
Tssr162563 X 160768126 to 160768129 3 + TSS region transcription start site region 162563
Tssr162564 X 160768137 to 160768168 31 + TSS region transcription start site region 162564
Tssr162565 X 160768179 to 160768183 4 + TSS region transcription start site region 162565
Tssr162566 X 160780603 to 160780607 4 + TSS region transcription start site region 162566
Cdkl5 X 160784308 to 160994681 210373 - protein coding gene cyclin-dependent kinase-like 5
Tssr5715 X 160792478 to 160792481 3 + TSS region transcription start site region 5715
Tssr162567 X 160794751 to 160794758 7 + TSS region transcription start site region 162567
Tssr162568 X 160796158 to 160796167 9 + TSS region transcription start site region 162568
2900054C01Rik X 160801392 to 160802750 1358 unclassified gene RIKEN cDNA 2900054C01 gene
Tssr164483 X 160806709 to 160806750 41 - TSS region transcription start site region 164483
Gja6 X 160902116 to 160907052 4936 - protein coding gene gap junction protein, alpha 6
Tssr164484 X 160906998 to 160907014 16 - TSS region transcription start site region 164484
Tssr164485 X 160976488 to 160976499 11 - TSS region transcription start site region 164485
Tssr164486 X 160976501 to 160976509 8 - TSS region transcription start site region 164486
Cpgi23030 X 160993975 to 160995127 1152 CpG island CpG island 23030
Tssr164487 X 160994641 to 160994661 20 - TSS region transcription start site region 164487
Tssr164488 X 160994665 to 160994686 21 - TSS region transcription start site region 164488
Cpgi23031 X 160995404 to 160995570 166 CpG island CpG island 23031
Tssr162569 X 161082504 to 161082537 33 + TSS region transcription start site region 162569
Scml2 X 161117193 to 161258213 141020 + protein coding gene Scm polycomb group protein like 2
n-TLtaa1 X 161135134 to 161135216 82 + tRNA gene nuclear encoded tRNA leucine 1 (anticodon TAA)
Tssr162570 X 161162744 to 161162775 31 + TSS region transcription start site region 162570
Cpgi23032 X 161162754 to 161163023 269 CpG island CpG island 23032
Tssr162571 X 161162994 to 161163054 60 + TSS region transcription start site region 162571
Gm5419 X 161272237 to 161272840 603 - pseudogene predicted gene 5419
Tssr162572 X 161297767 to 161297778 11 + TSS region transcription start site region 162572
Tssr162573 X 161297793 to 161297806 13 + TSS region transcription start site region 162573
Gm15262 X 161297856 to 161334722 36866 + protein coding gene predicted gene 15262
Gm36049 X 161357881 to 161364590 6709 + protein coding gene predicted gene, 36049
DXMit121.1 X 161429749 to 161429897 148 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 121.1
DXMit121 X 161429897 to 161430042 145 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 121
Obsty5 X 161429897 to 165366288 3936391 QTL obesity 5
Prkaca-ps1 X 161485567 to 161486485 918 - pseudogene protein kinase, cAMP dependent, catalytic, alpha pseudogene 1
Cpgi23033 X 161716734 to 161717942 1208 CpG island CpG island 23033
Tssr162574 X 161717025 to 161717039 14 + TSS region transcription start site region 162574
Tssr162575 X 161717055 to 161717073 18 + TSS region transcription start site region 162575
Rai2 X 161717069 to 161779496 62427 + protein coding gene retinoic acid induced 2
Tssr162576 X 161717461 to 161717496 35 + TSS region transcription start site region 162576
Tssr162577 X 161717498 to 161717519 21 + TSS region transcription start site region 162577
Tssr5716 X 161717641 to 161717657 16 + TSS region transcription start site region 5716
Tssr164489 X 161777847 to 161777855 8 - TSS region transcription start site region 164489
Tssr162578 X 161777941 to 161777959 18 + TSS region transcription start site region 162578
Scml1 X 161817734 to 161819587 1853 - lincRNA gene Scm polycomb group protein like 1
Gm15205 X 161821366 to 161832112 10746 - lincRNA gene predicted gene 15205
Tssr164490 X 161832116 to 161832127 11 - TSS region transcription start site region 164490
Nhs X 161833290 to 162159441 326151 - protein coding gene NHS actin remodeling regulator
Cpgi23034 X 161908071 to 161909392 1321 CpG island CpG island 23034
Gm15202 X 161908223 to 161908777 554 + antisense lncRNA gene predicted gene 15202
DXMit32 X 161975838 to 161975954 116 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 32
Tssr164491 X 162018855 to 162018887 32 - TSS region transcription start site region 164491
Tssr164492 X 162018961 to 162018975 14 - TSS region transcription start site region 164492