Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:159114637-159714655

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stpy X 146673077 to 159645105 12972028 heritable phenotypic marker stripey
DXMit179 X 159141682 to 159141803 121 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 179
Tssr162461 X 159210337 to 159210358 21 + TSS region transcription start site region 162461
Tssr162462 X 159210386 to 159210395 9 + TSS region transcription start site region 162462
Tssr162463 X 159210478 to 159210494 16 + TSS region transcription start site region 162463
Tssr162464 X 159210507 to 159210517 10 + TSS region transcription start site region 162464
Tssr162465 X 159211204 to 159211224 20 + TSS region transcription start site region 162465
Cpgi23021 X 159255336 to 159256538 1202 CpG island CpG island 23021
Rps6ka3 X 159255696 to 159368244 112548 + protein coding gene ribosomal protein S6 kinase polypeptide 3
Tssr162466 X 159255851 to 159255899 48 + TSS region transcription start site region 162466
Tssr162467 X 159255903 to 159255912 9 + TSS region transcription start site region 162467
Tssr162468 X 159255919 to 159255926 7 + TSS region transcription start site region 162468
Tssr162469 X 159256111 to 159256122 11 + TSS region transcription start site region 162469
Tssr164472 X 159257209 to 159257246 37 - TSS region transcription start site region 164472
Tssr162470 X 159303266 to 159303279 13 + TSS region transcription start site region 162470
Tssr162471 X 159303312 to 159303340 28 + TSS region transcription start site region 162471
DXMit70 X 159324735 to 159324932 197 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 70
Tssr162472 X 159337960 to 159337978 18 + TSS region transcription start site region 162472
Tssr162473 X 159341707 to 159341710 3 + TSS region transcription start site region 162473
Tssr162474 X 159364170 to 159364181 11 + TSS region transcription start site region 162474
Tssr162475 X 159364287 to 159364314 27 + TSS region transcription start site region 162475
Tssr162476 X 159364921 to 159364931 10 + TSS region transcription start site region 162476
Cpgi23022 X 159371774 to 159372702 928 CpG island CpG island 23022
Tssr162477 X 159371979 to 159372018 39 + TSS region transcription start site region 162477
Tssr162478 X 159372175 to 159372290 115 + TSS region transcription start site region 162478
Eif1ax X 159372195 to 159385699 13504 + protein coding gene eukaryotic translation initiation factor 1A, X-linked
Tssr162479 X 159372291 to 159372300 9 + TSS region transcription start site region 162479
Tssr162480 X 159372305 to 159372316 11 + TSS region transcription start site region 162480
Gm15187 X 159410247 to 159410510 263 - pseudogene predicted gene 15187
Cpgi23023 X 159414142 to 159415711 1569 CpG island CpG island 23023
Tssr162481 X 159414526 to 159414536 10 + TSS region transcription start site region 162481
Map7d2 X 159414572 to 159498757 84185 + protein coding gene MAP7 domain containing 2
Tssr162482 X 159414578 to 159414589 11 + TSS region transcription start site region 162482
Tssr162483 X 159414637 to 159414655 18 + TSS region transcription start site region 162483
Tssr162484 X 159414659 to 159414711 52 + TSS region transcription start site region 162484
Gm23806 X 159449277 to 159449385 108 + rRNA gene predicted gene, 23806
Tssr5713 X 159456411 to 159456424 13 + TSS region transcription start site region 5713
Tssr162485 X 159459133 to 159459165 32 + TSS region transcription start site region 162485
Tssr162486 X 159459167 to 159459193 26 + TSS region transcription start site region 162486
Tssr162487 X 159459199 to 159459214 15 + TSS region transcription start site region 162487
Tssr162488 X 159472840 to 159472854 14 + TSS region transcription start site region 162488
Tssr162489 X 159472867 to 159472881 14 + TSS region transcription start site region 162489
Tssr162490 X 159482275 to 159482294 19 + TSS region transcription start site region 162490
Tssr162491 X 159482985 to 159483001 16 + TSS region transcription start site region 162491
Tssr162492 X 159488812 to 159488815 3 + TSS region transcription start site region 162492
Tssr162493 X 159489309 to 159489327 18 + TSS region transcription start site region 162493
Gm39546 X 159507549 to 159516568 9019 - lncRNA gene predicted gene, 39546
Tssr5714 X 159508845 to 159508863 18 - TSS region transcription start site region 5714
DXMit33 X 159524832 to 159524962 130 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 33
Cpgi23024 X 159532449 to 159533655 1206 CpG island CpG island 23024
Bclaf3 X 159532640 to 159593081 60441 + protein coding gene Bclaf1 and Thrap3 family member 3
Tssr162494 X 159532655 to 159532668 13 + TSS region transcription start site region 162494
Tssr162495 X 159532674 to 159532748 74 + TSS region transcription start site region 162495
Tssr162496 X 159532762 to 159532775 13 + TSS region transcription start site region 162496
Panct1 X 159534484 to 159538528 4044 unclassified non-coding RNA gene pluripotency-associated noncoding transcript 1
4930422N03Rik X 159559977 to 159561973 1996 unclassified gene RIKEN cDNA 4930422N03 gene
Gm15190 X 159584783 to 159585058 275 - pseudogene predicted gene 15190
Tssr162497 X 159588315 to 159588352 37 + TSS region transcription start site region 162497
Gm15186 X 159588465 to 159589027 562 + pseudogene predicted gene 15186
Cpgi23025 X 159626671 to 159628000 1329 CpG island CpG island 23025
Sh3kbp1 X 159627028 to 159975920 348892 + protein coding gene SH3-domain kinase binding protein 1
Tssr162498 X 159627039 to 159627076 37 + TSS region transcription start site region 162498
Tssr162499 X 159627082 to 159627103 21 + TSS region transcription start site region 162499
Tssr162500 X 159627235 to 159627258 23 + TSS region transcription start site region 162500
Tssr162501 X 159627265 to 159627298 33 + TSS region transcription start site region 162501
Tssr162502 X 159627384 to 159627399 15 + TSS region transcription start site region 162502
Tssr162503 X 159627432 to 159627441 9 + TSS region transcription start site region 162503
Tssr162504 X 159627464 to 159627478 14 + TSS region transcription start site region 162504
Tssr162505 X 159627500 to 159627514 14 + TSS region transcription start site region 162505
Tssr162506 X 159627534 to 159627546 12 + TSS region transcription start site region 162506
Tssr162507 X 159627547 to 159627558 11 + TSS region transcription start site region 162507
Tssr162508 X 159638849 to 159638876 27 + TSS region transcription start site region 162508
Li X 159644928 to 163549527 3904599 heritable phenotypic marker lined
DXMit28 X 159644928 to 159645105 177 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 28
Tssr162509 X 159697308 to 159697331 23 + TSS region transcription start site region 162509
Tssr162510 X 159697343 to 159697350 7 + TSS region transcription start site region 162510
Tssr162511 X 159701349 to 159701354 5 + TSS region transcription start site region 162511
Tssr162512 X 159706093 to 159706101 8 + TSS region transcription start site region 162512
Tssr162513 X 159708593 to 159708612 19 + TSS region transcription start site region 162513
Tssr162514 X 159708614 to 159708642 28 + TSS region transcription start site region 162514
Tssr162515 X 159708655 to 159708660 5 + TSS region transcription start site region 162515