Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:157999133-160919165

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197 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stpy X 146673077 to 159645105 12972028 heritable phenotypic marker stripey
Cnksr2 X 157821573 to 158043353 221780 - protein coding gene connector enhancer of kinase suppressor of Ras 2
Cpgi23020 X 158042325 to 158043963 1638 CpG island CpG island 23020
Tssr5712 X 158043130 to 158043139 9 - TSS region transcription start site region 5712
Tssr164469 X 158043206 to 158043260 54 - TSS region transcription start site region 164469
Tssr164470 X 158043266 to 158043286 20 - TSS region transcription start site region 164470
Tssr164471 X 158043405 to 158043425 20 - TSS region transcription start site region 164471
Tssr162458 X 158149825 to 158149828 3 + TSS region transcription start site region 162458
Gm8659 X 158150096 to 158151179 1083 + pseudogene predicted gene 8659
Gm15170 X 158174826 to 158177484 2658 + pseudogene predicted gene 15170
Tssr162459 X 158248773 to 158248774 1 + TSS region transcription start site region 162459
Gm8662 X 158248797 to 158249370 573 + pseudogene predicted gene 8662
Gm15177 X 158302921 to 158303497 576 + pseudogene predicted gene 15177
DXMit180 X 158372846 to 158372995 149 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 180
DXMit180.2 X 158372973 to 158373109 136 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 180.2
Gm22522 X 158373082 to 158373232 150 + snoRNA gene predicted gene, 22522
Tssr162460 X 158452536 to 158452539 3 + TSS region transcription start site region 162460
Gm15168 X 158503317 to 158503901 584 - pseudogene predicted gene 15168
Gm5764 X 158833435 to 158834313 878 + pseudogene predicted gene 5764
Gm15185 X 159096347 to 159097092 745 - pseudogene predicted gene 15185
Gm15188 X 159102349 to 159104985 2636 - pseudogene predicted gene 15188
Gm15189 X 159106896 to 159108468 1572 + pseudogene predicted gene 15189
DXMit179 X 159141682 to 159141803 121 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 179
Tssr162461 X 159210337 to 159210358 21 + TSS region transcription start site region 162461
Tssr162462 X 159210386 to 159210395 9 + TSS region transcription start site region 162462
Tssr162463 X 159210478 to 159210494 16 + TSS region transcription start site region 162463
Tssr162464 X 159210507 to 159210517 10 + TSS region transcription start site region 162464
Tssr162465 X 159211204 to 159211224 20 + TSS region transcription start site region 162465
Cpgi23021 X 159255336 to 159256538 1202 CpG island CpG island 23021
Rps6ka3 X 159255696 to 159368244 112548 + protein coding gene ribosomal protein S6 kinase polypeptide 3
Tssr162466 X 159255851 to 159255899 48 + TSS region transcription start site region 162466
Tssr162467 X 159255903 to 159255912 9 + TSS region transcription start site region 162467
Tssr162468 X 159255919 to 159255926 7 + TSS region transcription start site region 162468
Tssr162469 X 159256111 to 159256122 11 + TSS region transcription start site region 162469
Tssr164472 X 159257209 to 159257246 37 - TSS region transcription start site region 164472
Tssr162470 X 159303266 to 159303279 13 + TSS region transcription start site region 162470
Tssr162471 X 159303312 to 159303340 28 + TSS region transcription start site region 162471
DXMit70 X 159324735 to 159324932 197 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 70
Tssr162472 X 159337960 to 159337978 18 + TSS region transcription start site region 162472
Tssr162473 X 159341707 to 159341710 3 + TSS region transcription start site region 162473
Tssr162474 X 159364170 to 159364181 11 + TSS region transcription start site region 162474
Tssr162475 X 159364287 to 159364314 27 + TSS region transcription start site region 162475
Tssr162476 X 159364921 to 159364931 10 + TSS region transcription start site region 162476
Cpgi23022 X 159371774 to 159372702 928 CpG island CpG island 23022
Tssr162477 X 159371979 to 159372018 39 + TSS region transcription start site region 162477
Tssr162478 X 159372175 to 159372290 115 + TSS region transcription start site region 162478
Eif1ax X 159372195 to 159385699 13504 + protein coding gene eukaryotic translation initiation factor 1A, X-linked
Tssr162479 X 159372291 to 159372300 9 + TSS region transcription start site region 162479
Tssr162480 X 159372305 to 159372316 11 + TSS region transcription start site region 162480
Gm15187 X 159410247 to 159410510 263 - pseudogene predicted gene 15187
Cpgi23023 X 159414142 to 159415711 1569 CpG island CpG island 23023
Tssr162481 X 159414526 to 159414536 10 + TSS region transcription start site region 162481
Map7d2 X 159414572 to 159498757 84185 + protein coding gene MAP7 domain containing 2
Tssr162482 X 159414578 to 159414589 11 + TSS region transcription start site region 162482
Tssr162483 X 159414637 to 159414655 18 + TSS region transcription start site region 162483
Tssr162484 X 159414659 to 159414711 52 + TSS region transcription start site region 162484
Gm23806 X 159449277 to 159449385 108 + rRNA gene predicted gene, 23806
Tssr5713 X 159456411 to 159456424 13 + TSS region transcription start site region 5713
Tssr162485 X 159459133 to 159459165 32 + TSS region transcription start site region 162485
Tssr162486 X 159459167 to 159459193 26 + TSS region transcription start site region 162486
Tssr162487 X 159459199 to 159459214 15 + TSS region transcription start site region 162487
Tssr162488 X 159472840 to 159472854 14 + TSS region transcription start site region 162488
Tssr162489 X 159472867 to 159472881 14 + TSS region transcription start site region 162489
Tssr162490 X 159482275 to 159482294 19 + TSS region transcription start site region 162490
Tssr162491 X 159482985 to 159483001 16 + TSS region transcription start site region 162491
Tssr162492 X 159488812 to 159488815 3 + TSS region transcription start site region 162492
Tssr162493 X 159489309 to 159489327 18 + TSS region transcription start site region 162493
Gm39546 X 159507549 to 159516568 9019 - lncRNA gene predicted gene, 39546
Tssr5714 X 159508845 to 159508863 18 - TSS region transcription start site region 5714
DXMit33 X 159524832 to 159524962 130 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 33
Cpgi23024 X 159532449 to 159533655 1206 CpG island CpG island 23024
Bclaf3 X 159532640 to 159593081 60441 + protein coding gene Bclaf1 and Thrap3 family member 3
Tssr162494 X 159532655 to 159532668 13 + TSS region transcription start site region 162494
Tssr162495 X 159532674 to 159532748 74 + TSS region transcription start site region 162495
Tssr162496 X 159532762 to 159532775 13 + TSS region transcription start site region 162496
Panct1 X 159534484 to 159538528 4044 unclassified non-coding RNA gene pluripotency-associated noncoding transcript 1
4930422N03Rik X 159559977 to 159561973 1996 unclassified gene RIKEN cDNA 4930422N03 gene
Gm15190 X 159584783 to 159585058 275 - pseudogene predicted gene 15190
Tssr162497 X 159588315 to 159588352 37 + TSS region transcription start site region 162497
Gm15186 X 159588465 to 159589027 562 + pseudogene predicted gene 15186
Cpgi23025 X 159626671 to 159628000 1329 CpG island CpG island 23025
Sh3kbp1 X 159627028 to 159975920 348892 + protein coding gene SH3-domain kinase binding protein 1
Tssr162498 X 159627039 to 159627076 37 + TSS region transcription start site region 162498
Tssr162499 X 159627082 to 159627103 21 + TSS region transcription start site region 162499
Tssr162500 X 159627235 to 159627258 23 + TSS region transcription start site region 162500
Tssr162501 X 159627265 to 159627298 33 + TSS region transcription start site region 162501
Tssr162502 X 159627384 to 159627399 15 + TSS region transcription start site region 162502
Tssr162503 X 159627432 to 159627441 9 + TSS region transcription start site region 162503
Tssr162504 X 159627464 to 159627478 14 + TSS region transcription start site region 162504
Tssr162505 X 159627500 to 159627514 14 + TSS region transcription start site region 162505
Tssr162506 X 159627534 to 159627546 12 + TSS region transcription start site region 162506
Tssr162507 X 159627547 to 159627558 11 + TSS region transcription start site region 162507
Tssr162508 X 159638849 to 159638876 27 + TSS region transcription start site region 162508
Li X 159644928 to 163549527 3904599 heritable phenotypic marker lined
DXMit28 X 159644928 to 159645105 177 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 28
Tssr162509 X 159697308 to 159697331 23 + TSS region transcription start site region 162509
Tssr162510 X 159697343 to 159697350 7 + TSS region transcription start site region 162510
Tssr162511 X 159701349 to 159701354 5 + TSS region transcription start site region 162511
Tssr162512 X 159706093 to 159706101 8 + TSS region transcription start site region 162512
Tssr162513 X 159708593 to 159708612 19 + TSS region transcription start site region 162513
Tssr162514 X 159708614 to 159708642 28 + TSS region transcription start site region 162514
Tssr162515 X 159708655 to 159708660 5 + TSS region transcription start site region 162515
DXMit99 X 159714695 to 159714842 147 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 99
Tssr164473 X 159758244 to 159758248 4 - TSS region transcription start site region 164473
Tssr162516 X 159840060 to 159840064 4 + TSS region transcription start site region 162516
Tssr162517 X 159840463 to 159840472 9 + TSS region transcription start site region 162517
Tssr162518 X 159840544 to 159840574 30 + TSS region transcription start site region 162518
Tssr162519 X 159865332 to 159865352 20 + TSS region transcription start site region 162519
Tssr162520 X 159878060 to 159878074 14 + TSS region transcription start site region 162520
Tssr162521 X 159901720 to 159901738 18 + TSS region transcription start site region 162521
Tssr162522 X 159913983 to 159914004 21 + TSS region transcription start site region 162522
Tssr162523 X 159917225 to 159917240 15 + TSS region transcription start site region 162523
DXMit189 X 159918982 to 159919100 118 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 189
Tssr162524 X 159924915 to 159924938 23 + TSS region transcription start site region 162524
Tssr162525 X 159940433 to 159940447 14 + TSS region transcription start site region 162525
Tssr162526 X 159941693 to 159941712 19 + TSS region transcription start site region 162526
Tssr162527 X 159942683 to 159942705 22 + TSS region transcription start site region 162527
Tssr162528 X 159942844 to 159942870 26 + TSS region transcription start site region 162528
Tssr162529 X 159942889 to 159942902 13 + TSS region transcription start site region 162529
Tssr162530 X 159942905 to 159942919 14 + TSS region transcription start site region 162530
Tssr162531 X 159942922 to 159942945 23 + TSS region transcription start site region 162531
Tssr162532 X 159942948 to 159942976 28 + TSS region transcription start site region 162532
Tssr162533 X 159942980 to 159942994 14 + TSS region transcription start site region 162533
Tssr162534 X 159943000 to 159943033 33 + TSS region transcription start site region 162534
Tssr162535 X 159943046 to 159943057 11 + TSS region transcription start site region 162535
Tssr162536 X 159943091 to 159943105 14 + TSS region transcription start site region 162536
Tssr162537 X 159944408 to 159944412 4 + TSS region transcription start site region 162537
Tssr162538 X 159961762 to 159961798 36 + TSS region transcription start site region 162538
Tssr162539 X 159973441 to 159973460 19 + TSS region transcription start site region 162539
Tssr162540 X 159973542 to 159973554 12 + TSS region transcription start site region 162540
Tssr162541 X 159973685 to 159973700 15 + TSS region transcription start site region 162541
Cpgi23026 X 159988019 to 159988931 912 CpG island CpG island 23026
Tssr162542 X 159988223 to 159988251 28 + TSS region transcription start site region 162542
Map3k15 X 159988433 to 160123351 134918 + protein coding gene mitogen-activated protein kinase kinase kinase 15
Gm15194 X 160020290 to 160020723 433 - pseudogene predicted gene 15194
Gm8682 X 160036321 to 160036818 497 + pseudogene predicted gene 8682
Pdha1 X 160122209 to 160138413 16204 - protein coding gene pyruvate dehydrogenase E1 alpha 1
Tssr162543 X 160126016 to 160126025 9 + TSS region transcription start site region 162543
Gm39547 X 160134585 to 160138247 3662 - lncRNA gene predicted gene, 39547
Cpgi23027 X 160137812 to 160138610 798 CpG island CpG island 23027
Tssr164474 X 160138324 to 160138336 12 - TSS region transcription start site region 164474
Tssr164475 X 160138349 to 160138371 22 - TSS region transcription start site region 164475
Tssr164476 X 160138375 to 160138435 60 - TSS region transcription start site region 164476
Gm15195 X 160269701 to 160269963 262 - pseudogene predicted gene 15195
Gm15192 X 160298478 to 160298770 292 + pseudogene predicted gene 15192
Gm15196 X 160309007 to 160309488 481 - pseudogene predicted gene 15196
Gm39548 X 160328737 to 160338598 9861 - lncRNA gene predicted gene, 39548
Tssr164477 X 160338533 to 160338541 8 - TSS region transcription start site region 164477
Tssr164478 X 160338632 to 160338636 4 - TSS region transcription start site region 164478
Gm15193 X 160345225 to 160345944 719 - pseudogene predicted gene 15193
Cpgi23028 X 160390439 to 160390955 516 CpG island CpG island 23028
Tssr162544 X 160390472 to 160390494 22 + TSS region transcription start site region 162544
Tssr162545 X 160390560 to 160390616 56 + TSS region transcription start site region 162545
Tssr162546 X 160390684 to 160390730 46 + TSS region transcription start site region 162546
Adgrg2 X 160390690 to 160498070 107380 + protein coding gene adhesion G protein-coupled receptor G2
Tssr162547 X 160391544 to 160391572 28 + TSS region transcription start site region 162547
Tssr162548 X 160404472 to 160404476 4 + TSS region transcription start site region 162548
Tssr162549 X 160434901 to 160434906 5 + TSS region transcription start site region 162549
Tssr162550 X 160438243 to 160438253 10 + TSS region transcription start site region 162550
Gm15241 X 160488703 to 160499818 11115 - antisense lncRNA gene predicted gene 15241
DXMit220 X 160489882 to 160490003 121 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 220
Cpgi23029 X 160501926 to 160502882 956 CpG island CpG island 23029
Tssr162551 X 160502153 to 160502201 48 + TSS region transcription start site region 162551
Phka2 X 160502166 to 160598878 96712 + protein coding gene phosphorylase kinase alpha 2
Tssr162552 X 160502418 to 160502485 67 + TSS region transcription start site region 162552
Tssr162553 X 160502508 to 160502524 16 + TSS region transcription start site region 162553
Tssr162554 X 160502631 to 160502706 75 + TSS region transcription start site region 162554
Tssr162555 X 160502712 to 160502731 19 + TSS region transcription start site region 162555
Tssr162556 X 160505179 to 160505182 3 + TSS region transcription start site region 162556
Gm15243 X 160527501 to 160533045 5544 - antisense lncRNA gene predicted gene 15243
Tssr162557 X 160529703 to 160529716 13 + TSS region transcription start site region 162557
Tssr162558 X 160529929 to 160529955 26 + TSS region transcription start site region 162558
Tssr162559 X 160529980 to 160530029 49 + TSS region transcription start site region 162559
Tssr162560 X 160530049 to 160530061 12 + TSS region transcription start site region 162560
Tssr162561 X 160530155 to 160530178 23 + TSS region transcription start site region 162561
Ppef1 X 160623094 to 160735765 112671 - protein coding gene protein phosphatase with EF hand calcium-binding domain 1
Gm15242 X 160713896 to 160714178 282 - pseudogene predicted gene 15242
Gm15244 X 160714196 to 160714325 129 + pseudogene predicted gene 15244
Tssr164479 X 160735747 to 160735758 11 - TSS region transcription start site region 164479
Tssr164480 X 160735801 to 160735812 11 - TSS region transcription start site region 164480
Tssr164481 X 160751264 to 160751274 10 - TSS region transcription start site region 164481
Tssr164482 X 160751286 to 160751299 13 - TSS region transcription start site region 164482
n-TVtac3 X 160766110 to 160766182 72 + tRNA gene nuclear encoded tRNA valine 3 (anticodon TAC)
Rs1 X 160768013 to 160799663 31650 + protein coding gene retinoschisis (X-linked, juvenile) 1 (human)
Tssr162562 X 160768109 to 160768122 13 + TSS region transcription start site region 162562
Tssr162563 X 160768126 to 160768129 3 + TSS region transcription start site region 162563
Tssr162564 X 160768137 to 160768168 31 + TSS region transcription start site region 162564
Tssr162565 X 160768179 to 160768183 4 + TSS region transcription start site region 162565
Tssr162566 X 160780603 to 160780607 4 + TSS region transcription start site region 162566
Cdkl5 X 160784308 to 160994681 210373 - protein coding gene cyclin-dependent kinase-like 5
Tssr5715 X 160792478 to 160792481 3 + TSS region transcription start site region 5715
Tssr162567 X 160794751 to 160794758 7 + TSS region transcription start site region 162567
Tssr162568 X 160796158 to 160796167 9 + TSS region transcription start site region 162568
2900054C01Rik X 160801392 to 160802750 1358 unclassified gene RIKEN cDNA 2900054C01 gene
Tssr164483 X 160806709 to 160806750 41 - TSS region transcription start site region 164483
Gja6 X 160902116 to 160907052 4936 - protein coding gene gap junction protein, alpha 6
Tssr164484 X 160906998 to 160907014 16 - TSS region transcription start site region 164484