Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:156522536-160382539

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228 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stpy X 146673077 to 159645105 12972028 heritable phenotypic marker stripey
4930503H13Rik X 156539483 to 156540117 634 + pseudogene RIKEN cDNA 4930503H13 gene
Gm7312 X 156679335 to 156679803 468 - pseudogene predicted gene 7312
Gm15162 X 156788206 to 156788488 282 + pseudogene predicted gene 15162
Tssr162430 X 156881449 to 156881453 4 + TSS region transcription start site region 162430
DXMit219 X 156998060 to 156998176 116 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 219
Gm15163 X 157016229 to 157017530 1301 - pseudogene predicted gene 15163
Tssr164452 X 157017542 to 157017560 18 - TSS region transcription start site region 164452
Gm22666 X 157053955 to 157054118 163 + snRNA gene predicted gene, 22666
Phex X 157162075 to 157415286 253211 - protein coding gene phosphate regulating endopeptidase homolog, X-linked
Gm23798 X 157191659 to 157191760 101 + miRNA gene predicted gene, 23798
Gm25795 X 157299490 to 157299621 131 - snoRNA gene predicted gene, 25795
Gm15172 X 157377957 to 157378978 1021 - pseudogene predicted gene 15172
Tssr164453 X 157414772 to 157414792 20 - TSS region transcription start site region 164453
Tssr5710 X 157414826 to 157414871 45 - TSS region transcription start site region 5710
Tssr164454 X 157415093 to 157415104 11 - TSS region transcription start site region 164454
Tssr164455 X 157415305 to 157415318 13 - TSS region transcription start site region 164455
Gm1947 X 157429417 to 157430326 909 + pseudogene predicted pseudogene 1947
Gm24281 X 157430604 to 157430739 135 + snoRNA gene predicted gene, 24281
Sms X 157443852 to 157492046 48194 - protein coding gene spermine synthase
Cpgi23016 X 157491247 to 157492347 1100 CpG island CpG island 23016
Tssr164456 X 157492022 to 157492059 37 - TSS region transcription start site region 164456
Tssr164457 X 157492061 to 157492081 20 - TSS region transcription start site region 164457
Tssr164458 X 157492177 to 157492246 69 - TSS region transcription start site region 164458
Tssr164459 X 157492280 to 157492340 60 - TSS region transcription start site region 164459
Gm19373 X 157518368 to 157518523 155 - pseudogene predicted gene, 19373
Tssr164460 X 157518583 to 157518600 17 - TSS region transcription start site region 164460
Tssr162431 X 157540680 to 157540685 5 + TSS region transcription start site region 162431
Gm6568 X 157540866 to 157541562 696 + pseudogene predicted pseudogene 6568
Mbtps2 X 157547822 to 157598715 50893 - protein coding gene membrane-bound transcription factor peptidase, site 2
Tssr164461 X 157557154 to 157557189 35 - TSS region transcription start site region 164461
Yy2 X 157566119 to 157568985 2866 - protein coding gene Yy2 transcription factor
Cpgi23017 X 157568935 to 157569147 212 CpG island CpG island 23017
Tssr164462 X 157568983 to 157568991 8 - TSS region transcription start site region 164462
Tssr164463 X 157579772 to 157579785 13 - TSS region transcription start site region 164463
Tssr164464 X 157595597 to 157595607 10 - TSS region transcription start site region 164464
Tssr162432 X 157598164 to 157598188 24 + TSS region transcription start site region 162432
Tssr162433 X 157598193 to 157598215 22 + TSS region transcription start site region 162433
Cpgi23018 X 157598197 to 157598936 739 CpG island CpG island 23018
Tssr164465 X 157598398 to 157598437 39 - TSS region transcription start site region 164465
Tssr164466 X 157598624 to 157598637 13 - TSS region transcription start site region 164466
Tssr164467 X 157598642 to 157598655 13 - TSS region transcription start site region 164467
Tssr164468 X 157598656 to 157598694 38 - TSS region transcription start site region 164468
Tssr162434 X 157598797 to 157598801 4 + TSS region transcription start site region 162434
Tssr162435 X 157598826 to 157598846 20 + TSS region transcription start site region 162435
Gm15176 X 157604033 to 157604167 134 - pseudogene predicted gene 15176
Gm15175 X 157604351 to 157604482 131 + pseudogene predicted gene 15175
Gm15173 X 157612689 to 157613121 432 - pseudogene predicted gene 15173
Gm23381 X 157638203 to 157638296 93 - rRNA gene predicted gene, 23381
Gm8644 X 157650704 to 157651299 595 - pseudogene predicted gene 8644
Gm15171 X 157663598 to 157663931 333 + pseudogene predicted gene 15171
Gm8648 X 157667565 to 157667785 220 - pseudogene predicted gene 8648
Smpx X 157698973 to 157752591 53618 + protein coding gene small muscle protein, X-linked
Tssr162436 X 157698985 to 157699013 28 + TSS region transcription start site region 162436
Tssr162437 X 157699069 to 157699076 7 + TSS region transcription start site region 162437
Tssr162438 X 157699113 to 157699134 21 + TSS region transcription start site region 162438
Tssr162439 X 157699153 to 157699166 13 + TSS region transcription start site region 162439
Tssr162440 X 157699184 to 157699205 21 + TSS region transcription start site region 162440
Tssr162441 X 157699206 to 157699217 11 + TSS region transcription start site region 162441
Tssr162442 X 157702489 to 157702500 11 + TSS region transcription start site region 162442
Tssr162443 X 157702574 to 157702585 11 + TSS region transcription start site region 162443
Tssr162444 X 157702763 to 157702778 15 + TSS region transcription start site region 162444
Tssr162445 X 157702791 to 157702827 36 + TSS region transcription start site region 162445
Tssr162446 X 157702832 to 157702841 9 + TSS region transcription start site region 162446
Tssr162447 X 157702849 to 157702856 7 + TSS region transcription start site region 162447
Tssr162448 X 157702868 to 157702878 10 + TSS region transcription start site region 162448
Tssr162449 X 157702887 to 157702914 27 + TSS region transcription start site region 162449
Tssr162450 X 157702949 to 157702964 15 + TSS region transcription start site region 162450
Tssr162451 X 157711172 to 157711196 24 + TSS region transcription start site region 162451
Tssr162452 X 157711366 to 157711378 12 + TSS region transcription start site region 162452
Tssr162453 X 157711388 to 157711399 11 + TSS region transcription start site region 162453
Tssr162454 X 157711532 to 157711541 9 + TSS region transcription start site region 162454
Tssr162455 X 157711543 to 157711561 18 + TSS region transcription start site region 162455
Tssr162456 X 157711565 to 157711576 11 + TSS region transcription start site region 162456
Tssr5711 X 157711584 to 157711590 6 + TSS region transcription start site region 5711
Gm15169 X 157757180 to 157759273 2093 - antisense lncRNA gene predicted gene 15169
Cpgi23019 X 157817632 to 157818031 399 CpG island CpG island 23019
Tssr162457 X 157817917 to 157817928 11 + TSS region transcription start site region 162457
Klhl34 X 157818435 to 157820369 1934 + protein coding gene kelch-like 34
Cnksr2 X 157821573 to 158043353 221780 - protein coding gene connector enhancer of kinase suppressor of Ras 2
Cpgi23020 X 158042325 to 158043963 1638 CpG island CpG island 23020
Tssr5712 X 158043130 to 158043139 9 - TSS region transcription start site region 5712
Tssr164469 X 158043206 to 158043260 54 - TSS region transcription start site region 164469
Tssr164470 X 158043266 to 158043286 20 - TSS region transcription start site region 164470
Tssr164471 X 158043405 to 158043425 20 - TSS region transcription start site region 164471
Tssr162458 X 158149825 to 158149828 3 + TSS region transcription start site region 162458
Gm8659 X 158150096 to 158151179 1083 + pseudogene predicted gene 8659
Gm15170 X 158174826 to 158177484 2658 + pseudogene predicted gene 15170
Tssr162459 X 158248773 to 158248774 1 + TSS region transcription start site region 162459
Gm8662 X 158248797 to 158249370 573 + pseudogene predicted gene 8662
Gm15177 X 158302921 to 158303497 576 + pseudogene predicted gene 15177
DXMit180 X 158372846 to 158372995 149 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 180
DXMit180.2 X 158372973 to 158373109 136 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 180.2
Gm22522 X 158373082 to 158373232 150 + snoRNA gene predicted gene, 22522
Tssr162460 X 158452536 to 158452539 3 + TSS region transcription start site region 162460
Gm15168 X 158503317 to 158503901 584 - pseudogene predicted gene 15168
Gm5764 X 158833435 to 158834313 878 + pseudogene predicted gene 5764
Gm15185 X 159096347 to 159097092 745 - pseudogene predicted gene 15185
Gm15188 X 159102349 to 159104985 2636 - pseudogene predicted gene 15188
Gm15189 X 159106896 to 159108468 1572 + pseudogene predicted gene 15189
DXMit179 X 159141682 to 159141803 121 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 179
Tssr162461 X 159210337 to 159210358 21 + TSS region transcription start site region 162461
Tssr162462 X 159210386 to 159210395 9 + TSS region transcription start site region 162462
Tssr162463 X 159210478 to 159210494 16 + TSS region transcription start site region 162463
Tssr162464 X 159210507 to 159210517 10 + TSS region transcription start site region 162464
Tssr162465 X 159211204 to 159211224 20 + TSS region transcription start site region 162465
Cpgi23021 X 159255336 to 159256538 1202 CpG island CpG island 23021
Rps6ka3 X 159255696 to 159368244 112548 + protein coding gene ribosomal protein S6 kinase polypeptide 3
Tssr162466 X 159255851 to 159255899 48 + TSS region transcription start site region 162466
Tssr162467 X 159255903 to 159255912 9 + TSS region transcription start site region 162467
Tssr162468 X 159255919 to 159255926 7 + TSS region transcription start site region 162468
Tssr162469 X 159256111 to 159256122 11 + TSS region transcription start site region 162469
Tssr164472 X 159257209 to 159257246 37 - TSS region transcription start site region 164472
Tssr162470 X 159303266 to 159303279 13 + TSS region transcription start site region 162470
Tssr162471 X 159303312 to 159303340 28 + TSS region transcription start site region 162471
DXMit70 X 159324735 to 159324932 197 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 70
Tssr162472 X 159337960 to 159337978 18 + TSS region transcription start site region 162472
Tssr162473 X 159341707 to 159341710 3 + TSS region transcription start site region 162473
Tssr162474 X 159364170 to 159364181 11 + TSS region transcription start site region 162474
Tssr162475 X 159364287 to 159364314 27 + TSS region transcription start site region 162475
Tssr162476 X 159364921 to 159364931 10 + TSS region transcription start site region 162476
Cpgi23022 X 159371774 to 159372702 928 CpG island CpG island 23022
Tssr162477 X 159371979 to 159372018 39 + TSS region transcription start site region 162477
Tssr162478 X 159372175 to 159372290 115 + TSS region transcription start site region 162478
Eif1ax X 159372195 to 159385699 13504 + protein coding gene eukaryotic translation initiation factor 1A, X-linked
Tssr162479 X 159372291 to 159372300 9 + TSS region transcription start site region 162479
Tssr162480 X 159372305 to 159372316 11 + TSS region transcription start site region 162480
Gm15187 X 159410247 to 159410510 263 - pseudogene predicted gene 15187
Cpgi23023 X 159414142 to 159415711 1569 CpG island CpG island 23023
Tssr162481 X 159414526 to 159414536 10 + TSS region transcription start site region 162481
Map7d2 X 159414572 to 159498757 84185 + protein coding gene MAP7 domain containing 2
Tssr162482 X 159414578 to 159414589 11 + TSS region transcription start site region 162482
Tssr162483 X 159414637 to 159414655 18 + TSS region transcription start site region 162483
Tssr162484 X 159414659 to 159414711 52 + TSS region transcription start site region 162484
Gm23806 X 159449277 to 159449385 108 + rRNA gene predicted gene, 23806
Tssr5713 X 159456411 to 159456424 13 + TSS region transcription start site region 5713
Tssr162485 X 159459133 to 159459165 32 + TSS region transcription start site region 162485
Tssr162486 X 159459167 to 159459193 26 + TSS region transcription start site region 162486
Tssr162487 X 159459199 to 159459214 15 + TSS region transcription start site region 162487
Tssr162488 X 159472840 to 159472854 14 + TSS region transcription start site region 162488
Tssr162489 X 159472867 to 159472881 14 + TSS region transcription start site region 162489
Tssr162490 X 159482275 to 159482294 19 + TSS region transcription start site region 162490
Tssr162491 X 159482985 to 159483001 16 + TSS region transcription start site region 162491
Tssr162492 X 159488812 to 159488815 3 + TSS region transcription start site region 162492
Tssr162493 X 159489309 to 159489327 18 + TSS region transcription start site region 162493
Gm39546 X 159507549 to 159516568 9019 - lncRNA gene predicted gene, 39546
Tssr5714 X 159508845 to 159508863 18 - TSS region transcription start site region 5714
DXMit33 X 159524832 to 159524962 130 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 33
Cpgi23024 X 159532449 to 159533655 1206 CpG island CpG island 23024
Bclaf3 X 159532640 to 159593081 60441 + protein coding gene Bclaf1 and Thrap3 family member 3
Tssr162494 X 159532655 to 159532668 13 + TSS region transcription start site region 162494
Tssr162495 X 159532674 to 159532748 74 + TSS region transcription start site region 162495
Tssr162496 X 159532762 to 159532775 13 + TSS region transcription start site region 162496
Panct1 X 159534484 to 159538528 4044 unclassified non-coding RNA gene pluripotency-associated noncoding transcript 1
4930422N03Rik X 159559977 to 159561973 1996 unclassified gene RIKEN cDNA 4930422N03 gene
Gm15190 X 159584783 to 159585058 275 - pseudogene predicted gene 15190
Tssr162497 X 159588315 to 159588352 37 + TSS region transcription start site region 162497
Gm15186 X 159588465 to 159589027 562 + pseudogene predicted gene 15186
Cpgi23025 X 159626671 to 159628000 1329 CpG island CpG island 23025
Sh3kbp1 X 159627028 to 159975920 348892 + protein coding gene SH3-domain kinase binding protein 1
Tssr162498 X 159627039 to 159627076 37 + TSS region transcription start site region 162498
Tssr162499 X 159627082 to 159627103 21 + TSS region transcription start site region 162499
Tssr162500 X 159627235 to 159627258 23 + TSS region transcription start site region 162500
Tssr162501 X 159627265 to 159627298 33 + TSS region transcription start site region 162501
Tssr162502 X 159627384 to 159627399 15 + TSS region transcription start site region 162502
Tssr162503 X 159627432 to 159627441 9 + TSS region transcription start site region 162503
Tssr162504 X 159627464 to 159627478 14 + TSS region transcription start site region 162504
Tssr162505 X 159627500 to 159627514 14 + TSS region transcription start site region 162505
Tssr162506 X 159627534 to 159627546 12 + TSS region transcription start site region 162506
Tssr162507 X 159627547 to 159627558 11 + TSS region transcription start site region 162507
Tssr162508 X 159638849 to 159638876 27 + TSS region transcription start site region 162508
Li X 159644928 to 163549527 3904599 heritable phenotypic marker lined
DXMit28 X 159644928 to 159645105 177 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 28
Tssr162509 X 159697308 to 159697331 23 + TSS region transcription start site region 162509
Tssr162510 X 159697343 to 159697350 7 + TSS region transcription start site region 162510
Tssr162511 X 159701349 to 159701354 5 + TSS region transcription start site region 162511
Tssr162512 X 159706093 to 159706101 8 + TSS region transcription start site region 162512
Tssr162513 X 159708593 to 159708612 19 + TSS region transcription start site region 162513
Tssr162514 X 159708614 to 159708642 28 + TSS region transcription start site region 162514
Tssr162515 X 159708655 to 159708660 5 + TSS region transcription start site region 162515
DXMit99 X 159714695 to 159714842 147 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 99
Tssr164473 X 159758244 to 159758248 4 - TSS region transcription start site region 164473
Tssr162516 X 159840060 to 159840064 4 + TSS region transcription start site region 162516
Tssr162517 X 159840463 to 159840472 9 + TSS region transcription start site region 162517
Tssr162518 X 159840544 to 159840574 30 + TSS region transcription start site region 162518
Tssr162519 X 159865332 to 159865352 20 + TSS region transcription start site region 162519
Tssr162520 X 159878060 to 159878074 14 + TSS region transcription start site region 162520
Tssr162521 X 159901720 to 159901738 18 + TSS region transcription start site region 162521
Tssr162522 X 159913983 to 159914004 21 + TSS region transcription start site region 162522
Tssr162523 X 159917225 to 159917240 15 + TSS region transcription start site region 162523
DXMit189 X 159918982 to 159919100 118 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 189
Tssr162524 X 159924915 to 159924938 23 + TSS region transcription start site region 162524
Tssr162525 X 159940433 to 159940447 14 + TSS region transcription start site region 162525
Tssr162526 X 159941693 to 159941712 19 + TSS region transcription start site region 162526
Tssr162527 X 159942683 to 159942705 22 + TSS region transcription start site region 162527
Tssr162528 X 159942844 to 159942870 26 + TSS region transcription start site region 162528
Tssr162529 X 159942889 to 159942902 13 + TSS region transcription start site region 162529
Tssr162530 X 159942905 to 159942919 14 + TSS region transcription start site region 162530
Tssr162531 X 159942922 to 159942945 23 + TSS region transcription start site region 162531
Tssr162532 X 159942948 to 159942976 28 + TSS region transcription start site region 162532