Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:154343409-155913440

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Svwq2 X 130000000 to 155000000 25000000 QTL seminal vesicle weight QTL 2
Tssr162416 X 154350367 to 154350378 11 + TSS region transcription start site region 162416
Tssr5707 X 154398209 to 154398248 39 + TSS region transcription start site region 5707
Gm5646 X 154399578 to 154402044 2466 + pseudogene predicted pseudogene 5646
Gm8569 X 154436056 to 154436702 646 + pseudogene predicted gene 8569
Samt4 X 154482002 to 154484682 2680 + protein coding gene spermatogenesis associated multipass transmembrane protein 4
Samt2 X 154575228 to 154579330 4102 - protein coding gene spermatogenesis associated multipass transmembrane protein 2
Gm15142 X 154635586 to 154639130 3544 + pseudogene predicted gene 15142
Tssr5708 X 154685278 to 154685279 1 + TSS region transcription start site region 5708
Gm22359 X 154711258 to 154711365 107 + snRNA gene predicted gene, 22359
Gm39544 X 154733207 to 154738779 5572 + lncRNA gene predicted gene, 39544
Gm35136 X 154767593 to 154768808 1215 + lncRNA gene predicted gene, 35136
Gm8577 X 154774459 to 154775438 979 + pseudogene predicted gene 8577
Cldn34b1 X 154886805 to 154890267 3462 - protein coding gene claudin 34B1
Tssr164428 X 154890270 to 154890314 44 - TSS region transcription start site region 164428
Magea6 X 154924012 to 154935987 11975 - protein coding gene melanoma antigen, family A, 6
Magea3 X 154948543 to 154949505 962 - protein coding gene melanoma antigen, family A, 3
Gm6645 X 154972006 to 154974933 2927 - pseudogene predicted gene 6645
Gm25257 X 154979339 to 154979448 109 + snRNA gene predicted gene, 25257
Magea8 X 154985775 to 154995850 10075 - protein coding gene melanoma antigen, family A, 8
Magea2 X 155027201 to 155033313 6112 - protein coding gene melanoma antigen, family A, 2
Gm24268 X 155046610 to 155046719 109 + snRNA gene predicted gene, 24268
Magea5 X 155053061 to 155063145 10084 - protein coding gene melanoma antigen, family A, 5
Magea1 X 155088686 to 155089793 1107 - protein coding gene melanoma antigen, family A, 1
Cldn34b2 X 155124917 to 155128412 3495 - protein coding gene claudin 34B2
Tssr164429 X 155128409 to 155128440 31 - TSS region transcription start site region 164429
Gm25429 X 155139896 to 155140027 131 + snoRNA gene predicted gene, 25429
Gm4997 X 155150952 to 155151311 359 - pseudogene predicted gene 4997
Tssr162417 X 155154867 to 155154871 4 + TSS region transcription start site region 162417
Amd-ps1 X 155155195 to 155156188 993 + pseudogene S-adenosylmethionine decarboxylase, pseudogene 1
Tssr162418 X 155172446 to 155172448 2 + TSS region transcription start site region 162418
Tssr162419 X 155172522 to 155172554 32 + TSS region transcription start site region 162419
Gm8595 X 155179281 to 155179910 629 + pseudogene predicted gene 8595
Gm15157 X 155185679 to 155186380 701 + pseudogene predicted gene 15157
Sat1 X 155213132 to 155216449 3317 - protein coding gene spermidine/spermine N1-acetyl transferase 1
Tssr164430 X 155214104 to 155214138 34 - TSS region transcription start site region 164430
Tssr164431 X 155214879 to 155214882 3 - TSS region transcription start site region 164431
Tssr164432 X 155215680 to 155215723 43 - TSS region transcription start site region 164432
Tssr164433 X 155216338 to 155216369 31 - TSS region transcription start site region 164433
Tssr164434 X 155216374 to 155216405 31 - TSS region transcription start site region 164434
Cpgi23011 X 155216416 to 155216598 182 CpG island CpG island 23011
Tssr164435 X 155216444 to 155216456 12 - TSS region transcription start site region 164435
Gm15159 X 155237498 to 155238261 763 + pseudogene predicted gene 15159
Cpgi23012 X 155262350 to 155262783 433 CpG island CpG island 23012
Acot9 X 155262443 to 155297654 35211 + protein coding gene acyl-CoA thioesterase 9
Tssr162420 X 155262447 to 155262458 11 + TSS region transcription start site region 162420
Tssr162421 X 155262460 to 155262481 21 + TSS region transcription start site region 162421
Tssr162422 X 155262511 to 155262522 11 + TSS region transcription start site region 162422
Tssr162423 X 155262531 to 155262544 13 + TSS region transcription start site region 162423
4921511E18Rik X 155300711 to 155302689 1978 unclassified gene RIKEN cDNA 4921511E18 gene
Gm650 X 155304199 to 155305749 1550 - pseudogene predicted pseudogene 650
Prdx4 X 155323918 to 155340749 16831 - protein coding gene peroxiredoxin 4
Cpgi23013 X 155338151 to 155338580 429 CpG island CpG island 23013
Tssr164436 X 155338376 to 155338387 11 - TSS region transcription start site region 164436
Tssr164437 X 155338389 to 155338456 67 - TSS region transcription start site region 164437
Tssr164438 X 155338460 to 155338471 11 - TSS region transcription start site region 164438
Tssr164439 X 155338475 to 155338486 11 - TSS region transcription start site region 164439
Tssr164440 X 155340747 to 155340759 12 - TSS region transcription start site region 164440
Tssr164441 X 155340768 to 155340773 5 - TSS region transcription start site region 164441
Gm39545 X 155355287 to 155392524 37237 + lncRNA gene predicted gene, 39545
Gm15158 X 155477096 to 155477665 569 + pseudogene predicted gene 15158
Gm8606 X 155504037 to 155504924 887 - pseudogene predicted gene 8606
Tssr164442 X 155504938 to 155504947 9 - TSS region transcription start site region 164442
n-R5s16 X 155543290 to 155543408 118 + rRNA gene nuclear encoded rRNA 5S 16
DXDcr5 X 155566020 to 155566115 95 DNA segment DNA Segment, Chr X, Derry C. Roopenian 5
Tssr164443 X 155572436 to 155572437 1 - TSS region transcription start site region 164443
Ptchd1 X 155573455 to 155623814 50359 - protein coding gene patched domain containing 1
Tssr164444 X 155606298 to 155606300 2 - TSS region transcription start site region 164444
Tssr162424 X 155622649 to 155622665 16 + TSS region transcription start site region 162424
Cpgi23014 X 155622658 to 155624171 1513 CpG island CpG island 23014
Tssr162425 X 155622679 to 155622698 19 + TSS region transcription start site region 162425
Tssr162426 X 155622785 to 155622811 26 + TSS region transcription start site region 162426
Gm15156 X 155622789 to 155623361 572 + antisense lncRNA gene predicted gene 15156
Tssr164445 X 155623481 to 155623502 21 - TSS region transcription start site region 164445
Tssr164446 X 155623525 to 155623561 36 - TSS region transcription start site region 164446
Tssr164447 X 155623805 to 155623821 16 - TSS region transcription start site region 164447
Tssr164448 X 155624080 to 155624104 24 - TSS region transcription start site region 164448
Tssr164449 X 155624135 to 155624146 11 - TSS region transcription start site region 164449
Cpgi23015 X 155624594 to 155625097 503 CpG island CpG island 23015
Gm15155 X 155624846 to 156062072 437226 + protein coding gene predicted gene 15155
Tssr162427 X 155628065 to 155628071 6 + TSS region transcription start site region 162427
Tssr5709 X 155712219 to 155712224 5 - TSS region transcription start site region 5709
Tssr162428 X 155912002 to 155912005 3 + TSS region transcription start site region 162428