Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:15371675-18451691

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm14518 X 15522456 to 15522994 538 + pseudogene predicted gene 14518
Gm14517 X 15524425 to 15524761 336 - pseudogene predicted gene 14517
Gm25207 X 15685285 to 15685391 106 - snRNA gene predicted gene, 25207
Gm22464 X 15707782 to 15707845 63 + miRNA gene predicted gene, 22464
DXMit137 X 15750327 to 15750443 116 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 137
DXMit207 X 15799377 to 15799490 113 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 207
Gm23516 X 15896663 to 15896769 106 - snRNA gene predicted gene, 23516
Drr1 X 15922304 to 15939249 16945 - lincRNA gene developmentally regulated repeat element-containing transcript 1
Tssr160612 X 15926090 to 15926095 5 + TSS region transcription start site region 160612
DXMit190 X 16163208 to 16163313 105 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 190
Cypt11 X 16233372 to 16234018 646 unclassified gene cysteine-rich perinuclear theca 11
Gm14520 X 16275521 to 16275907 386 - pseudogene predicted gene 14520
Gm14516 X 16379396 to 16379647 251 - pseudogene predicted gene 14516
Cypt1 X 16522869 to 16523689 820 + protein coding gene cysteine-rich perinuclear theca 1
Tssr160613 X 16522871 to 16522874 3 + TSS region transcription start site region 160613
Gm18109 X 16571194 to 16572212 1018 + pseudogene predicted gene, 18109
Csnk2a1-ps X 16610252 to 16611426 1174 + pseudogene casein kinase 2, alpha 1, pseudogene
Cpgi22637 X 16618271 to 16619059 788 CpG island CpG island 22637
Tssr160614 X 16618563 to 16618576 13 + TSS region transcription start site region 160614
Maoa X 16619698 to 16687812 68114 + protein coding gene monoamine oxidase A
Tssr160615 X 16619755 to 16619758 3 + TSS region transcription start site region 160615
Tssr160616 X 16619809 to 16619818 9 + TSS region transcription start site region 160616
Tssr160617 X 16619824 to 16619842 18 + TSS region transcription start site region 160617
Tssr160618 X 16634586 to 16634591 5 + TSS region transcription start site region 160618
Maob X 16709282 to 16817366 108084 - protein coding gene monoamine oxidase B
DXMit138 X 16756724 to 16756991 267 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 138
Tssr163024 X 16817316 to 16817335 19 - TSS region transcription start site region 163024
Tssr163025 X 16817339 to 16817373 34 - TSS region transcription start site region 163025
Tssr163026 X 16817380 to 16817403 23 - TSS region transcription start site region 163026
Ndp X 16885521 to 16911774 26253 - protein coding gene Norrie disease (pseudoglioma) (human)
DXMit56 X 16910241 to 16910384 143 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 56
Tssr163027 X 16911466 to 16911478 12 - TSS region transcription start site region 163027
Tssr163028 X 16911675 to 16911691 16 - TSS region transcription start site region 163028
DXMit53 X 16963313 to 16963429 116 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 53
Gm4203 X 17111320 to 17115627 4307 - lncRNA gene predicted gene 4203
Efhc2 X 17132049 to 17319368 187319 - protein coding gene EF-hand domain (C-terminal) containing 2
Tssr163029 X 17251295 to 17251323 28 - TSS region transcription start site region 163029
Gm35105 X 17251541 to 17454628 203087 + lncRNA gene predicted gene, 35105
Tssr160619 X 17251545 to 17251558 13 + TSS region transcription start site region 160619
Gm14514 X 17252741 to 17254397 1656 + pseudogene predicted gene 14514
Tssr163030 X 17319316 to 17319334 18 - TSS region transcription start site region 163030
Tssr163031 X 17319365 to 17319400 35 - TSS region transcription start site region 163031
Cpgi22638 X 17319380 to 17319583 203 CpG island CpG island 22638
Gm22294 X 17325315 to 17325418 103 + snRNA gene predicted gene, 22294
Gm39497 X 17393298 to 17516990 123692 - lncRNA gene predicted gene, 39497
Cpgi22639 X 17513528 to 17513706 178 CpG island CpG island 22639
Fundc1 X 17556564 to 17572325 15761 - protein coding gene FUN14 domain containing 1
Tssr163032 X 17571563 to 17571595 32 - TSS region transcription start site region 163032
Tssr163033 X 17572177 to 17572213 36 - TSS region transcription start site region 163033
Tssr163034 X 17572217 to 17572228 11 - TSS region transcription start site region 163034
Tssr163035 X 17572241 to 17572279 38 - TSS region transcription start site region 163035
Tssr163036 X 17572282 to 17572296 14 - TSS region transcription start site region 163036
Tssr160620 X 17609654 to 17609689 35 + TSS region transcription start site region 160620
Gm5073 X 17626257 to 17627076 819 + pseudogene predicted pseudogene 5073
Gm9436 X 17674430 to 17676284 1854 - pseudogene predicted gene 9436
Tssr160621 X 17725443 to 17725462 19 + TSS region transcription start site region 160621
Gm39498 X 17776754 to 17809103 32349 - lncRNA gene predicted gene, 39498
Gm5755 X 17880670 to 17881506 836 - pseudogene predicted pseudogene 5755
Gm5123 X 17912982 to 17913818 836 - pseudogene predicted pseudogene 5123
Gm35506 X 18100250 to 18105623 5373 - lncRNA gene predicted gene, 35506
Gm41891 X 18115964 to 18147122 31158 - lncRNA gene predicted gene, 41891
Tssr160622 X 18145851 to 18145877 26 + TSS region transcription start site region 160622
Dusp21 X 18145870 to 18146694 824 + protein coding gene dual specificity phosphatase 21
Tssr160623 X 18145882 to 18145883 1 + TSS region transcription start site region 160623
Tssr163037 X 18147089 to 18147101 12 - TSS region transcription start site region 163037
Gm4730 X 18155283 to 18155457 174 - pseudogene predicted gene 4730
Cpgi22640 X 18161980 to 18163899 1919 CpG island CpG island 22640
Kdm6a X 18162575 to 18279936 117361 + protein coding gene lysine (K)-specific demethylase 6A
Tssr160624 X 18162602 to 18162657 55 + TSS region transcription start site region 160624
Tssr160625 X 18162664 to 18162682 18 + TSS region transcription start site region 160625
Tssr160626 X 18162692 to 18162701 9 + TSS region transcription start site region 160626
Tssr5596 X 18162721 to 18162730 9 + TSS region transcription start site region 5596
Tssr160627 X 18163056 to 18163061 5 + TSS region transcription start site region 160627
DXErtd770e X 18208272 to 18208488 216 DNA segment DNA segment, Chr X, ERATO Doi 770, expressed
Tssr160628 X 18226859 to 18226863 4 + TSS region transcription start site region 160628
n-R5s5 X 18323444 to 18323562 118 - rRNA gene nuclear encoded rRNA 5S 5
Gm14883 X 18343798 to 18343954 156 + pseudogene predicted gene 14883
Dipk2b X 18414881 to 18461397 46516 - protein coding gene divergent protein kinase domain 2B