Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:153289685-154872526

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58 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Klf8 X 153237466 to 153396132 158666 + protein coding gene Kruppel-like factor 8
Tssr162402 X 153305703 to 153305735 32 + TSS region transcription start site region 162402
Tssr162403 X 153359575 to 153359590 15 + TSS region transcription start site region 162403
Tssr162404 X 153360091 to 153360107 16 + TSS region transcription start site region 162404
Gm7150 X 153403090 to 153404070 980 - pseudogene predicted gene 7150
Cpgi23010 X 153497842 to 153499313 1471 CpG island CpG island 23010
Tssr162405 X 153498166 to 153498172 6 + TSS region transcription start site region 162405
Tssr162406 X 153498177 to 153498191 14 + TSS region transcription start site region 162406
Tssr162407 X 153498202 to 153498224 22 + TSS region transcription start site region 162407
Ubqln2 X 153498232 to 153501562 3330 + protein coding gene ubiquilin 2
Tssr162408 X 153499345 to 153499358 13 + TSS region transcription start site region 162408
Tssr162409 X 153499368 to 153499381 13 + TSS region transcription start site region 162409
Tssr162410 X 153500298 to 153500310 12 + TSS region transcription start site region 162410
Tssr162411 X 153500331 to 153500362 31 + TSS region transcription start site region 162411
Gm15166 X 153509012 to 153509396 384 - pseudogene predicted gene 15166
Tssr162412 X 153558591 to 153558594 3 + TSS region transcription start site region 162412
Cypt3 X 153558593 to 153559429 836 + protein coding gene cysteine-rich perinuclear theca 3
Gm39543 X 153568014 to 153623291 55277 - lncRNA gene predicted gene, 39543
Gm25793 X 153576488 to 153576594 106 - snRNA gene predicted gene, 25793
Gm8534 X 153656606 to 153657371 765 + pseudogene predicted gene 8534
Kctd12b X 153685154 to 153696386 11232 - protein coding gene potassium channel tetramerisation domain containing 12b
Tssr164426 X 153696163 to 153696182 19 - TSS region transcription start site region 164426
Tssr164427 X 153696195 to 153696258 63 - TSS region transcription start site region 164427
Gm45022 X 153721157 to 153723881 2724 - antisense lncRNA gene predicted gene 45022
Nbdy X 153723554 to 153741296 17742 + protein coding gene negative regulator of P-body association
Tssr162413 X 153723581 to 153723646 65 + TSS region transcription start site region 162413
DXMit98 X 153735461 to 153735613 152 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 98
Smt3h1-ps X 153783340 to 153783619 279 + pseudogene SMT3 suppressor of mif two 3 homolog 1, pseudogene (S. cerevisiae)
Spin2c X 153832225 to 153834243 2018 + protein coding gene spindlin family, member 2C
Tssr162414 X 153832236 to 153832281 45 + TSS region transcription start site region 162414
Tssr162415 X 153832308 to 153832318 10 + TSS region transcription start site region 162415
DXMit133 X 153884644 to 153884778 134 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 133
Gm25895 X 153915116 to 153915215 99 - snRNA gene predicted gene, 25895
Samt1 X 154001590 to 154012640 11050 - protein coding gene spermatogenesis associated multipass transmembrane protein 1
4921511M17Rik X 154022780 to 154033827 11047 - protein coding gene RIKEN cDNA 4921511M17 gene
Gm10057 X 154043986 to 154055039 11053 - protein coding gene predicted gene 10057
Gm15143 X 154065313 to 154068139 2826 - pseudogene predicted gene 15143
Gm5947 X 154079685 to 154082526 2841 - pseudogene predicted pseudogene 5947
Gm15140 X 154109633 to 154120685 11052 - protein coding gene predicted gene 15140
Gm5645 X 154130958 to 154133971 3013 - pseudogene predicted pseudogene 5645
Gm16445 X 154152689 to 154155509 2820 - pseudogene predicted pseudogene 16445
Gm6620 X 154182913 to 154186149 3236 - pseudogene predicted gene 6620
Gm15147 X 154198754 to 154199236 482 - pseudogene predicted gene 15147
Gm5060 X 154226501 to 154227099 598 - pseudogene predicted gene 5060
Gm15141 X 154237234 to 154239503 2269 - pseudogene predicted gene 15141
4930524N10Rik X 154339225 to 154343392 4167 - protein coding gene RIKEN cDNA 4930524N10 gene
Tssr162416 X 154350367 to 154350378 11 + TSS region transcription start site region 162416
Tssr5707 X 154398209 to 154398248 39 + TSS region transcription start site region 5707
Gm5646 X 154399578 to 154402044 2466 + pseudogene predicted pseudogene 5646
Gm8569 X 154436056 to 154436702 646 + pseudogene predicted gene 8569
Samt4 X 154482002 to 154484682 2680 + protein coding gene spermatogenesis associated multipass transmembrane protein 4
Samt2 X 154575228 to 154579330 4102 - protein coding gene spermatogenesis associated multipass transmembrane protein 2
Gm15142 X 154635586 to 154639130 3544 + pseudogene predicted gene 15142
Tssr5708 X 154685278 to 154685279 1 + TSS region transcription start site region 5708
Gm22359 X 154711258 to 154711365 107 + snRNA gene predicted gene, 22359
Gm39544 X 154733207 to 154738779 5572 + lncRNA gene predicted gene, 39544
Gm35136 X 154767593 to 154768808 1215 + lncRNA gene predicted gene, 35136
Gm8577 X 154774459 to 154775438 979 + pseudogene predicted gene 8577