Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:152562466-154071132

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cldn34a X 152563334 to 152563969 635 + protein coding gene claudin 34A
Gm8475 X 152565212 to 152565737 525 + pseudogene predicted gene 8475
Tssr5706 X 152584211 to 152584212 1 + TSS region transcription start site region 5706
Shroom2 X 152609509 to 152769465 159956 - protein coding gene shroom family member 2
Tssr164404 X 152643849 to 152643861 12 - TSS region transcription start site region 164404
Tssr164405 X 152643864 to 152643881 17 - TSS region transcription start site region 164405
Tssr164406 X 152644091 to 152644123 32 - TSS region transcription start site region 164406
Tssr164407 X 152644134 to 152644162 28 - TSS region transcription start site region 164407
Tssr164408 X 152644418 to 152644429 11 - TSS region transcription start site region 164408
Tssr164409 X 152644431 to 152644470 39 - TSS region transcription start site region 164409
Tssr164410 X 152644472 to 152644486 14 - TSS region transcription start site region 164410
Tssr164411 X 152644488 to 152644544 56 - TSS region transcription start site region 164411
Tssr164412 X 152657471 to 152657487 16 - TSS region transcription start site region 164412
Tssr164413 X 152657503 to 152657509 6 - TSS region transcription start site region 164413
Tssr164414 X 152657762 to 152657783 21 - TSS region transcription start site region 164414
Tssr164415 X 152689460 to 152689468 8 - TSS region transcription start site region 164415
Gm18298 X 152700961 to 152701505 544 + pseudogene predicted gene, 18298
C430004N12Rik X 152750899 to 152751590 691 unclassified gene RIKEN cDNA C430004N12 gene
Cpgi23004 X 152769056 to 152770177 1121 CpG island CpG island 23004
Tssr164416 X 152769600 to 152769649 49 - TSS region transcription start site region 164416
Tssr164417 X 152769672 to 152769686 14 - TSS region transcription start site region 164417
Gpr143 X 152781921 to 152808646 26725 + protein coding gene G protein-coupled receptor 143
Tssr162395 X 152781994 to 152782029 35 + TSS region transcription start site region 162395
Cpgi23005 X 152782030 to 152782199 169 CpG island CpG island 23005
DXMit218 X 152789460 to 152789545 85 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 218
Gm24687 X 152868620 to 152868860 240 + ribozyme gene predicted gene, 24687
Tssr164418 X 152875554 to 152875560 6 - TSS region transcription start site region 164418
Rpl7a-ps12 X 152908778 to 152910296 1518 - pseudogene ribosomal protein L7A, pseudogene 12
Gm6472 X 152909505 to 152910155 650 - pseudogene predicted pseudogene 6472
Tssr164419 X 152910146 to 152910156 10 - TSS region transcription start site region 164419
Gm26035 X 152923453 to 152923760 307 - unclassified non-coding RNA gene predicted gene, 26035
Tssr162396 X 153006461 to 153006504 43 + TSS region transcription start site region 162396
Usp51 X 153006469 to 153009416 2947 + protein coding gene ubiquitin specific protease 51
Cpgi23006 X 153007014 to 153007695 681 CpG island CpG island 23006
Mageh1 X 153036166 to 153037563 1397 - protein coding gene melanoma antigen, family H, 1
Tssr164420 X 153036570 to 153036573 3 - TSS region transcription start site region 164420
Cpgi23007 X 153037224 to 153037679 455 CpG island CpG island 23007
Tssr164421 X 153037451 to 153037471 20 - TSS region transcription start site region 164421
Tssr164422 X 153037474 to 153037485 11 - TSS region transcription start site region 164422
Tssr164423 X 153037489 to 153037547 58 - TSS region transcription start site region 164423
Tssr164424 X 153037549 to 153037581 32 - TSS region transcription start site region 164424
9530051G07Rik X 153037629 to 153072915 35286 + lncRNA gene RIKEN cDNA 9530051G07 gene
Gm5396 X 153112923 to 153113454 531 - pseudogene predicted pseudogene 5396
Gm26960 X 153114053 to 153114767 714 + pseudogene predicted gene, 26960
Foxr2 X 153118786 to 153132861 14075 + protein coding gene forkhead box R2
Cpgi23008 X 153139825 to 153140326 501 CpG island CpG island 23008
Tssr162397 X 153139941 to 153140011 70 + TSS region transcription start site region 162397
Rragb X 153139981 to 153171943 31962 + protein coding gene Ras-related GTP binding B
Tssr162398 X 153140012 to 153140045 33 + TSS region transcription start site region 162398
Tssr162399 X 153140074 to 153140091 17 + TSS region transcription start site region 162399
Tssr162400 X 153140111 to 153140122 11 + TSS region transcription start site region 162400
Gm15153 X 153221170 to 153221443 273 + pseudogene predicted gene 15153
Klf8 X 153237466 to 153396132 158666 + protein coding gene Kruppel-like factor 8
Tssr162401 X 153237812 to 153237842 30 + TSS region transcription start site region 162401
Cpgi23009 X 153237844 to 153238101 257 CpG island CpG island 23009
Tssr164425 X 153262875 to 153262879 4 - TSS region transcription start site region 164425
Tssr162402 X 153305703 to 153305735 32 + TSS region transcription start site region 162402
Tssr162403 X 153359575 to 153359590 15 + TSS region transcription start site region 162403
Tssr162404 X 153360091 to 153360107 16 + TSS region transcription start site region 162404
Gm7150 X 153403090 to 153404070 980 - pseudogene predicted gene 7150
Cpgi23010 X 153497842 to 153499313 1471 CpG island CpG island 23010
Tssr162405 X 153498166 to 153498172 6 + TSS region transcription start site region 162405
Tssr162406 X 153498177 to 153498191 14 + TSS region transcription start site region 162406
Tssr162407 X 153498202 to 153498224 22 + TSS region transcription start site region 162407
Ubqln2 X 153498232 to 153501562 3330 + protein coding gene ubiquilin 2
Tssr162408 X 153499345 to 153499358 13 + TSS region transcription start site region 162408
Tssr162409 X 153499368 to 153499381 13 + TSS region transcription start site region 162409
Tssr162410 X 153500298 to 153500310 12 + TSS region transcription start site region 162410
Tssr162411 X 153500331 to 153500362 31 + TSS region transcription start site region 162411
Gm15166 X 153509012 to 153509396 384 - pseudogene predicted gene 15166
Tssr162412 X 153558591 to 153558594 3 + TSS region transcription start site region 162412
Cypt3 X 153558593 to 153559429 836 + protein coding gene cysteine-rich perinuclear theca 3
Gm39543 X 153568014 to 153623291 55277 - lncRNA gene predicted gene, 39543
Gm25793 X 153576488 to 153576594 106 - snRNA gene predicted gene, 25793
Gm8534 X 153656606 to 153657371 765 + pseudogene predicted gene 8534
Kctd12b X 153685154 to 153696386 11232 - protein coding gene potassium channel tetramerisation domain containing 12b
Tssr164426 X 153696163 to 153696182 19 - TSS region transcription start site region 164426
Tssr164427 X 153696195 to 153696258 63 - TSS region transcription start site region 164427
Gm45022 X 153721157 to 153723881 2724 - antisense lncRNA gene predicted gene 45022
Nbdy X 153723554 to 153741296 17742 + protein coding gene negative regulator of P-body association
Tssr162413 X 153723581 to 153723646 65 + TSS region transcription start site region 162413
DXMit98 X 153735461 to 153735613 152 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 98
Smt3h1-ps X 153783340 to 153783619 279 + pseudogene SMT3 suppressor of mif two 3 homolog 1, pseudogene (S. cerevisiae)
Spin2c X 153832225 to 153834243 2018 + protein coding gene spindlin family, member 2C
Tssr162414 X 153832236 to 153832281 45 + TSS region transcription start site region 162414
Tssr162415 X 153832308 to 153832318 10 + TSS region transcription start site region 162415
DXMit133 X 153884644 to 153884778 134 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 133
Gm25895 X 153915116 to 153915215 99 - snRNA gene predicted gene, 25895
Samt1 X 154001590 to 154012640 11050 - protein coding gene spermatogenesis associated multipass transmembrane protein 1
4921511M17Rik X 154022780 to 154033827 11047 - protein coding gene RIKEN cDNA 4921511M17 gene
Gm10057 X 154043986 to 154055039 11053 - protein coding gene predicted gene 10057
Gm15143 X 154065313 to 154068139 2826 - pseudogene predicted gene 15143