Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:152519685-155642526

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184 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Svwq2 X 130000000 to 155000000 25000000 QTL seminal vesicle weight QTL 2
Tssr5705 X 152537501 to 152537547 46 + TSS region transcription start site region 5705
Gm7158 X 152544354 to 152545055 701 - pseudogene predicted gene 7158
Cldn34a X 152563334 to 152563969 635 + protein coding gene claudin 34A
Gm8475 X 152565212 to 152565737 525 + pseudogene predicted gene 8475
Tssr5706 X 152584211 to 152584212 1 + TSS region transcription start site region 5706
Shroom2 X 152609509 to 152769465 159956 - protein coding gene shroom family member 2
Tssr164404 X 152643849 to 152643861 12 - TSS region transcription start site region 164404
Tssr164405 X 152643864 to 152643881 17 - TSS region transcription start site region 164405
Tssr164406 X 152644091 to 152644123 32 - TSS region transcription start site region 164406
Tssr164407 X 152644134 to 152644162 28 - TSS region transcription start site region 164407
Tssr164408 X 152644418 to 152644429 11 - TSS region transcription start site region 164408
Tssr164409 X 152644431 to 152644470 39 - TSS region transcription start site region 164409
Tssr164410 X 152644472 to 152644486 14 - TSS region transcription start site region 164410
Tssr164411 X 152644488 to 152644544 56 - TSS region transcription start site region 164411
Tssr164412 X 152657471 to 152657487 16 - TSS region transcription start site region 164412
Tssr164413 X 152657503 to 152657509 6 - TSS region transcription start site region 164413
Tssr164414 X 152657762 to 152657783 21 - TSS region transcription start site region 164414
Tssr164415 X 152689460 to 152689468 8 - TSS region transcription start site region 164415
Gm18298 X 152700961 to 152701505 544 + pseudogene predicted gene, 18298
C430004N12Rik X 152750899 to 152751590 691 unclassified gene RIKEN cDNA C430004N12 gene
Cpgi23004 X 152769056 to 152770177 1121 CpG island CpG island 23004
Tssr164416 X 152769600 to 152769649 49 - TSS region transcription start site region 164416
Tssr164417 X 152769672 to 152769686 14 - TSS region transcription start site region 164417
Gpr143 X 152781921 to 152808646 26725 + protein coding gene G protein-coupled receptor 143
Tssr162395 X 152781994 to 152782029 35 + TSS region transcription start site region 162395
Cpgi23005 X 152782030 to 152782199 169 CpG island CpG island 23005
DXMit218 X 152789460 to 152789545 85 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 218
Gm24687 X 152868620 to 152868860 240 + ribozyme gene predicted gene, 24687
Tssr164418 X 152875554 to 152875560 6 - TSS region transcription start site region 164418
Rpl7a-ps12 X 152908778 to 152910296 1518 - pseudogene ribosomal protein L7A, pseudogene 12
Gm6472 X 152909505 to 152910155 650 - pseudogene predicted pseudogene 6472
Tssr164419 X 152910146 to 152910156 10 - TSS region transcription start site region 164419
Gm26035 X 152923453 to 152923760 307 - unclassified non-coding RNA gene predicted gene, 26035
Tssr162396 X 153006461 to 153006504 43 + TSS region transcription start site region 162396
Usp51 X 153006469 to 153009416 2947 + protein coding gene ubiquitin specific protease 51
Cpgi23006 X 153007014 to 153007695 681 CpG island CpG island 23006
Mageh1 X 153036166 to 153037563 1397 - protein coding gene melanoma antigen, family H, 1
Tssr164420 X 153036570 to 153036573 3 - TSS region transcription start site region 164420
Cpgi23007 X 153037224 to 153037679 455 CpG island CpG island 23007
Tssr164421 X 153037451 to 153037471 20 - TSS region transcription start site region 164421
Tssr164422 X 153037474 to 153037485 11 - TSS region transcription start site region 164422
Tssr164423 X 153037489 to 153037547 58 - TSS region transcription start site region 164423
Tssr164424 X 153037549 to 153037581 32 - TSS region transcription start site region 164424
9530051G07Rik X 153037629 to 153072915 35286 + lncRNA gene RIKEN cDNA 9530051G07 gene
Gm5396 X 153112923 to 153113454 531 - pseudogene predicted pseudogene 5396
Gm26960 X 153114053 to 153114767 714 + pseudogene predicted gene, 26960
Foxr2 X 153118786 to 153132861 14075 + protein coding gene forkhead box R2
Cpgi23008 X 153139825 to 153140326 501 CpG island CpG island 23008
Tssr162397 X 153139941 to 153140011 70 + TSS region transcription start site region 162397
Rragb X 153139981 to 153171943 31962 + protein coding gene Ras-related GTP binding B
Tssr162398 X 153140012 to 153140045 33 + TSS region transcription start site region 162398
Tssr162399 X 153140074 to 153140091 17 + TSS region transcription start site region 162399
Tssr162400 X 153140111 to 153140122 11 + TSS region transcription start site region 162400
Gm15153 X 153221170 to 153221443 273 + pseudogene predicted gene 15153
Klf8 X 153237466 to 153396132 158666 + protein coding gene Kruppel-like factor 8
Tssr162401 X 153237812 to 153237842 30 + TSS region transcription start site region 162401
Cpgi23009 X 153237844 to 153238101 257 CpG island CpG island 23009
Tssr164425 X 153262875 to 153262879 4 - TSS region transcription start site region 164425
Tssr162402 X 153305703 to 153305735 32 + TSS region transcription start site region 162402
Tssr162403 X 153359575 to 153359590 15 + TSS region transcription start site region 162403
Tssr162404 X 153360091 to 153360107 16 + TSS region transcription start site region 162404
Gm7150 X 153403090 to 153404070 980 - pseudogene predicted gene 7150
Cpgi23010 X 153497842 to 153499313 1471 CpG island CpG island 23010
Tssr162405 X 153498166 to 153498172 6 + TSS region transcription start site region 162405
Tssr162406 X 153498177 to 153498191 14 + TSS region transcription start site region 162406
Tssr162407 X 153498202 to 153498224 22 + TSS region transcription start site region 162407
Ubqln2 X 153498232 to 153501562 3330 + protein coding gene ubiquilin 2
Tssr162408 X 153499345 to 153499358 13 + TSS region transcription start site region 162408
Tssr162409 X 153499368 to 153499381 13 + TSS region transcription start site region 162409
Tssr162410 X 153500298 to 153500310 12 + TSS region transcription start site region 162410
Tssr162411 X 153500331 to 153500362 31 + TSS region transcription start site region 162411
Gm15166 X 153509012 to 153509396 384 - pseudogene predicted gene 15166
Tssr162412 X 153558591 to 153558594 3 + TSS region transcription start site region 162412
Cypt3 X 153558593 to 153559429 836 + protein coding gene cysteine-rich perinuclear theca 3
Gm39543 X 153568014 to 153623291 55277 - lncRNA gene predicted gene, 39543
Gm25793 X 153576488 to 153576594 106 - snRNA gene predicted gene, 25793
Gm8534 X 153656606 to 153657371 765 + pseudogene predicted gene 8534
Kctd12b X 153685154 to 153696386 11232 - protein coding gene potassium channel tetramerisation domain containing 12b
Tssr164426 X 153696163 to 153696182 19 - TSS region transcription start site region 164426
Tssr164427 X 153696195 to 153696258 63 - TSS region transcription start site region 164427
Gm45022 X 153721157 to 153723881 2724 - antisense lncRNA gene predicted gene 45022
Nbdy X 153723554 to 153741296 17742 + protein coding gene negative regulator of P-body association
Tssr162413 X 153723581 to 153723646 65 + TSS region transcription start site region 162413
DXMit98 X 153735461 to 153735613 152 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 98
Smt3h1-ps X 153783340 to 153783619 279 + pseudogene SMT3 suppressor of mif two 3 homolog 1, pseudogene (S. cerevisiae)
Spin2c X 153832225 to 153834243 2018 + protein coding gene spindlin family, member 2C
Tssr162414 X 153832236 to 153832281 45 + TSS region transcription start site region 162414
Tssr162415 X 153832308 to 153832318 10 + TSS region transcription start site region 162415
DXMit133 X 153884644 to 153884778 134 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 133
Gm25895 X 153915116 to 153915215 99 - snRNA gene predicted gene, 25895
Samt1 X 154001590 to 154012640 11050 - protein coding gene spermatogenesis associated multipass transmembrane protein 1
4921511M17Rik X 154022780 to 154033827 11047 - protein coding gene RIKEN cDNA 4921511M17 gene
Gm10057 X 154043986 to 154055039 11053 - protein coding gene predicted gene 10057
Gm15143 X 154065313 to 154068139 2826 - pseudogene predicted gene 15143
Gm5947 X 154079685 to 154082526 2841 - pseudogene predicted pseudogene 5947
Gm15140 X 154109633 to 154120685 11052 - protein coding gene predicted gene 15140
Gm5645 X 154130958 to 154133971 3013 - pseudogene predicted pseudogene 5645
Gm16445 X 154152689 to 154155509 2820 - pseudogene predicted pseudogene 16445
Gm6620 X 154182913 to 154186149 3236 - pseudogene predicted gene 6620
Gm15147 X 154198754 to 154199236 482 - pseudogene predicted gene 15147
Gm5060 X 154226501 to 154227099 598 - pseudogene predicted gene 5060
Gm15141 X 154237234 to 154239503 2269 - pseudogene predicted gene 15141
4930524N10Rik X 154339225 to 154343392 4167 - protein coding gene RIKEN cDNA 4930524N10 gene
Tssr162416 X 154350367 to 154350378 11 + TSS region transcription start site region 162416
Tssr5707 X 154398209 to 154398248 39 + TSS region transcription start site region 5707
Gm5646 X 154399578 to 154402044 2466 + pseudogene predicted pseudogene 5646
Gm8569 X 154436056 to 154436702 646 + pseudogene predicted gene 8569
Samt4 X 154482002 to 154484682 2680 + protein coding gene spermatogenesis associated multipass transmembrane protein 4
Samt2 X 154575228 to 154579330 4102 - protein coding gene spermatogenesis associated multipass transmembrane protein 2
Gm15142 X 154635586 to 154639130 3544 + pseudogene predicted gene 15142
Tssr5708 X 154685278 to 154685279 1 + TSS region transcription start site region 5708
Gm22359 X 154711258 to 154711365 107 + snRNA gene predicted gene, 22359
Gm39544 X 154733207 to 154738779 5572 + lncRNA gene predicted gene, 39544
Gm35136 X 154767593 to 154768808 1215 + lncRNA gene predicted gene, 35136
Gm8577 X 154774459 to 154775438 979 + pseudogene predicted gene 8577
Cldn34b1 X 154886805 to 154890267 3462 - protein coding gene claudin 34B1
Tssr164428 X 154890270 to 154890314 44 - TSS region transcription start site region 164428
Magea6 X 154924012 to 154935987 11975 - protein coding gene melanoma antigen, family A, 6
Magea3 X 154948543 to 154949505 962 - protein coding gene melanoma antigen, family A, 3
Gm6645 X 154972006 to 154974933 2927 - pseudogene predicted gene 6645
Gm25257 X 154979339 to 154979448 109 + snRNA gene predicted gene, 25257
Magea8 X 154985775 to 154995850 10075 - protein coding gene melanoma antigen, family A, 8
Magea2 X 155027201 to 155033313 6112 - protein coding gene melanoma antigen, family A, 2
Gm24268 X 155046610 to 155046719 109 + snRNA gene predicted gene, 24268
Magea5 X 155053061 to 155063145 10084 - protein coding gene melanoma antigen, family A, 5
Magea1 X 155088686 to 155089793 1107 - protein coding gene melanoma antigen, family A, 1
Cldn34b2 X 155124917 to 155128412 3495 - protein coding gene claudin 34B2
Tssr164429 X 155128409 to 155128440 31 - TSS region transcription start site region 164429
Gm25429 X 155139896 to 155140027 131 + snoRNA gene predicted gene, 25429
Gm4997 X 155150952 to 155151311 359 - pseudogene predicted gene 4997
Tssr162417 X 155154867 to 155154871 4 + TSS region transcription start site region 162417
Amd-ps1 X 155155195 to 155156188 993 + pseudogene S-adenosylmethionine decarboxylase, pseudogene 1
Tssr162418 X 155172446 to 155172448 2 + TSS region transcription start site region 162418
Tssr162419 X 155172522 to 155172554 32 + TSS region transcription start site region 162419
Gm8595 X 155179281 to 155179910 629 + pseudogene predicted gene 8595
Gm15157 X 155185679 to 155186380 701 + pseudogene predicted gene 15157
Sat1 X 155213132 to 155216449 3317 - protein coding gene spermidine/spermine N1-acetyl transferase 1
Tssr164430 X 155214104 to 155214138 34 - TSS region transcription start site region 164430
Tssr164431 X 155214879 to 155214882 3 - TSS region transcription start site region 164431
Tssr164432 X 155215680 to 155215723 43 - TSS region transcription start site region 164432
Tssr164433 X 155216338 to 155216369 31 - TSS region transcription start site region 164433
Tssr164434 X 155216374 to 155216405 31 - TSS region transcription start site region 164434
Cpgi23011 X 155216416 to 155216598 182 CpG island CpG island 23011
Tssr164435 X 155216444 to 155216456 12 - TSS region transcription start site region 164435
Gm15159 X 155237498 to 155238261 763 + pseudogene predicted gene 15159
Cpgi23012 X 155262350 to 155262783 433 CpG island CpG island 23012
Acot9 X 155262443 to 155297654 35211 + protein coding gene acyl-CoA thioesterase 9
Tssr162420 X 155262447 to 155262458 11 + TSS region transcription start site region 162420
Tssr162421 X 155262460 to 155262481 21 + TSS region transcription start site region 162421
Tssr162422 X 155262511 to 155262522 11 + TSS region transcription start site region 162422
Tssr162423 X 155262531 to 155262544 13 + TSS region transcription start site region 162423
4921511E18Rik X 155300711 to 155302689 1978 unclassified gene RIKEN cDNA 4921511E18 gene
Gm650 X 155304199 to 155305749 1550 - pseudogene predicted pseudogene 650
Prdx4 X 155323918 to 155340749 16831 - protein coding gene peroxiredoxin 4
Cpgi23013 X 155338151 to 155338580 429 CpG island CpG island 23013
Tssr164436 X 155338376 to 155338387 11 - TSS region transcription start site region 164436
Tssr164437 X 155338389 to 155338456 67 - TSS region transcription start site region 164437
Tssr164438 X 155338460 to 155338471 11 - TSS region transcription start site region 164438
Tssr164439 X 155338475 to 155338486 11 - TSS region transcription start site region 164439
Tssr164440 X 155340747 to 155340759 12 - TSS region transcription start site region 164440
Tssr164441 X 155340768 to 155340773 5 - TSS region transcription start site region 164441
Gm39545 X 155355287 to 155392524 37237 + lncRNA gene predicted gene, 39545
Gm15158 X 155477096 to 155477665 569 + pseudogene predicted gene 15158
Gm8606 X 155504037 to 155504924 887 - pseudogene predicted gene 8606
Tssr164442 X 155504938 to 155504947 9 - TSS region transcription start site region 164442
n-R5s16 X 155543290 to 155543408 118 + rRNA gene nuclear encoded rRNA 5S 16
DXDcr5 X 155566020 to 155566115 95 DNA segment DNA Segment, Chr X, Derry C. Roopenian 5
Tssr164443 X 155572436 to 155572437 1 - TSS region transcription start site region 164443
Ptchd1 X 155573455 to 155623814 50359 - protein coding gene patched domain containing 1
Tssr164444 X 155606298 to 155606300 2 - TSS region transcription start site region 164444
Tssr162424 X 155622649 to 155622665 16 + TSS region transcription start site region 162424
Cpgi23014 X 155622658 to 155624171 1513 CpG island CpG island 23014
Tssr162425 X 155622679 to 155622698 19 + TSS region transcription start site region 162425
Tssr162426 X 155622785 to 155622811 26 + TSS region transcription start site region 162426
Gm15156 X 155622789 to 155623361 572 + antisense lncRNA gene predicted gene 15156
Tssr164445 X 155623481 to 155623502 21 - TSS region transcription start site region 164445
Tssr164446 X 155623525 to 155623561 36 - TSS region transcription start site region 164446
Tssr164447 X 155623805 to 155623821 16 - TSS region transcription start site region 164447
Tssr164448 X 155624080 to 155624104 24 - TSS region transcription start site region 164448
Tssr164449 X 155624135 to 155624146 11 - TSS region transcription start site region 164449
Cpgi23015 X 155624594 to 155625097 503 CpG island CpG island 23015
Gm15155 X 155624846 to 156062072 437226 + protein coding gene predicted gene 15155
Tssr162427 X 155628065 to 155628071 6 + TSS region transcription start site region 162427